Name: Acidovorax sp. JS42
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 2896

Type strain:

Species: Acidovorax sp.

Strain Designation: JS42

Culture col. no.: DSM 22895

Strain history: <- R.-M. Wittich, Estacion Experimental del Zaidin, Granada, Spain <- B. E. Haigler and J. C. Spain, Tyndall Air Force Base, Florida; JS42

NCBI tax ID(s): 1872122 (species)

SI-ID 402741

DSM 22895

Special Collections

DSMZ

Other strains from Acidovorax sp.

Section

Acidovorax sp. JS42 is a Gram-negative bacterium that was isolated from contaminated soil and groundwater.

Gram-negative
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Comamonadaceae*
	Genus	*Acidovorax*
	Full Scientific Name (LPSN)	Acidovorax Willems et al. 1990

	Synonym	Paenacidovorax
	Synonym	Paracidovorax

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %97.25

Multimedia content

[Ref.: #16607]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16607]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #16607]

Culture medium growth

[Ref.: #16607]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16607]

Culture medium composition

expand / minimize

[Ref.: #16607]

Culture medium

MINERAL MEDIUM (BRUNNER) (DSMZ Medium 457)

[Ref.: #16607]

Culture medium growth

[Ref.: #16607]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16607]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #16607]			growth	28 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16607]	Sample type/isolated from	contaminated soil and groundwater
[Ref.: #16607]	Country	USA
[Ref.: #16607]	Country ISO 3 Code	USA
[Ref.: #16607]	Continent	North America
* marker position based on {}

Isolation sources categories

#Engineered	#Contamination	-
#Environmental	#Aquatic	#Groundwater
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Acidovorax sp. JS42	GCA_000015545	complete	GenBank ENA	232721 tax ID	*
[Ref.: #66792]	Acidovorax sp. JS42	232721.25	plasmid	PATRIC	232721 tax ID	*
[Ref.: #66792]	Acidovorax sp. JS42	232721.24	plasmid	PATRIC	232721 tax ID	*
[Ref.: #66792]	Acidovorax sp. JS42	232721.9	complete	PATRIC	232721 tax ID	*
[Ref.: #66792]	Acidovorax sp. JS42	639633003	complete	JGI IMG/M	232721 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Acidovorax sp. JS42 JS42 NCBI: GCA_000015545.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	97.25	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.166	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	82.554	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	89.09	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97.11	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	82.305	no

Availability in culture collections External links

[Ref.: #16607]

Culture collection no.

DSM 22895

[Ref.: #72419]

SI-ID 402741

References

#16607

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22895

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#72419

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402741.1 )

* These data were automatically processed and therefore are not curated

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Acidovorax sp. JS42 JS42

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