Strain identifier
BacDive ID: 2896
Type strain: 
Species: Acidovorax sp.
Strain Designation: JS42
Strain history: <- R.-M. Wittich, Estacion Experimental del Zaidin, Granada, Spain <- B. E. Haigler and J. C. Spain, Tyndall Air Force Base, Florida; JS42
NCBI tax ID(s): 1872122 (species)
version 9.1 (current version)
General
@ref: 16607
BacDive-ID: 2896
DSM-Number: 22895
keywords: genome sequence, Bacteria, Gram-negative
description: Acidovorax sp. JS42 is a Gram-negative bacterium that was isolated from contaminated soil and groundwater.
NCBI tax id
- NCBI tax id: 1872122
- Matching level: species
strain history
- @ref: 16607
- history: <- R.-M. Wittich, Estacion Experimental del Zaidin, Granada, Spain <- B. E. Haigler and J. C. Spain, Tyndall Air Force Base, Florida; JS42
doi: 10.13145/bacdive2896.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Comamonadaceae
- genus: Acidovorax
- species: Acidovorax sp.
- full scientific name: Acidovorax Willems et al. 1990
synonyms
@ref synonym 20215 Paenacidovorax 20215 Paracidovorax
@ref: 16607
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Comamonadaceae
genus: Acidovorax
species: Acidovorax sp.
full scientific name: Acidovorax sp.
strain designation: JS42
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 97.25
multimedia
- @ref: 16607
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_22895.jpg
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 16607 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | yes | https://mediadive.dsmz.de/medium/535 | Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water |
| 16607 | MINERAL MEDIUM (BRUNNER) (DSMZ Medium 457) | yes | https://mediadive.dsmz.de/medium/457 | Name: MINERAL MEDIUM (BRUNNER) (DSMZ Medium 457) Composition: Na2HPO4 2.44 g/l KH2PO4 1.52 g/l (NH4)2SO4 0.5 g/l MgSO4 x 7 H2O 0.2 g/l CaCl2 x 2 H2O 0.05 g/l EDTA 0.005 g/l FeSO4 x 7 H2O 0.002 g/l H3BO3 0.0003 g/l CoCl2 x 6 H2O 0.0002 g/l ZnSO4 x 7 H2O 0.0001 g/l MnCl2 x 4 H2O 3e-05 g/l Na2MoO4 x 2 H2O 3e-05 g/l NiCl2 x 6 H2O 2e-05 g/l CuCl2 x 2 H2O 1e-05 g/l Distilled water |
culture temp
- @ref: 16607
- growth: positive
- type: growth
- temperature: 28
Isolation, sampling and environmental information
isolation
- @ref: 16607
- sample type: contaminated soil and groundwater
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Contamination | |
| #Environmental | #Aquatic | #Groundwater |
| #Environmental | #Terrestrial | #Soil |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Acidovorax sp. JS42 | GCA_000015545 | complete | ncbi | 232721 |
| 66792 | Acidovorax sp. JS42 | 232721.25 | plasmid | patric | 232721 |
| 66792 | Acidovorax sp. JS42 | 232721.24 | plasmid | patric | 232721 |
| 66792 | Acidovorax sp. JS42 | 232721.9 | complete | patric | 232721 |
| 66792 | Acidovorax sp. JS42 | 639633003 | complete | img | 232721 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 97.25 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 97.166 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 82.554 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 89.09 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 97.11 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 82.305 | no |
External links
@ref: 16607
culture collection no.: DSM 22895
straininfo link
- @ref: 72419
- straininfo: 402741
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 16607 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22895) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-22895 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 72419 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID402741.1 | StrainInfo: A central database for resolving microbial strain identifiers |