Acidovorax sp. (DSM 102363, Root267)

Name: Acidovorax sp. (DSM 102363, Root267)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 131583

Type strain

Strain Designation Root267

Culture col. no. DSM 102363 Root267

NCBI tax ID(s) 1872122

Special Collections DSMZ Arabidopsis

History DSMZ <- P. Schulze-Lefert, Max Planck Institute for Plant Breeding Research, Cologne, Germany; Root267 <- Y. Bai

Links

Root267 is a bacterium that was isolated from roots of Arabidopsis thaliana ecotype Shakdara .

genome sequence Bacteria

Name and taxonomic classification

SI-ID 404999

DSM 102363

@ref 20215

Last LPSN update 2026-05-29 08:37:39

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Comamonadaceae

Genus Acidovorax

Full scientific name Acidovorax Willems et al. 1990

Synonyms (2)

Paenacidovorax
Paracidovorax

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	98.38
125438	negative	96

Multimedia

@ref:	23379
multimedia content:	DSM_102363.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_102363.jpg
caption:	cells of DSM 102363 on medium 830 at 28 °C
intellectual property rights:	Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH
manual_annotation:	1

@ref:	23379
multimedia content:	DSM_102363-1.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_102363-1.jpg
caption:	colonies of DSM 102363 on medium 830 at 28 °C
intellectual property rights:	Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
23379	NUTRIENT AGAR (DSMZ Medium 1)		Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
23379	R2A MEDIUM (DSMZ Medium 830)		Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
23379	positive	growth	28

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		99.807

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
23379	roots of Arabidopsis thaliana ecotype Shakdara (Sha)	Arabidopsis thaliana	Potsdam, Golm district (52.416N 12.968E)	Germany	DEU	Europe	52.4159	12.968 52.4159/12.968

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	Root267 assembly for Acidovorax sp. Root267	scaffold	GCA_001429215	1736505.3	2643221717	1736505	69.82

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Root267 assembly for Acidovorax sp. Root267
BV-BRC: 1736505.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	77.85	no
125439	gram_stain	BacteriaNetⓘ	negative	98.38	no
125439	motility	BacteriaNetⓘ	yes	84.03	no
125439	spore_formation	BacteriaNetⓘ	no	99.81	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Acidovorax sp. Root267 Root267
NCBI: GCA_001429215.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.00	no
125438	anaerobic	anaerobicⓘ	no	96.95	no
125438	aerobic	aerobicⓘ	yes	89.32	no
125438	spore-forming	spore-formingⓘ	no	88.47	no
125438	thermophilic	thermophileⓘ	no	99.00	yes
125438	flagellated	motile2+ⓘ	yes	83.56	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#23379	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 102363
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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