Xanthomonas campestris (DSM 3586, ATCC 33913, NCPPB 528)

Name: Xanthomonas campestris (DSM 3586, ATCC 33913, NCPPB 528)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17584

Type strain

Strain Designation P 25

Culture col. no. DSM 3586 ATCC 33913 NCPPB 528 PDDCC 13 CCUG 47691 10 more

NCBI tax ID(s) 339

Special Collections DSMZ CCUG JCM CIP Literature strains

History <- NCPPB <- E. Billing, P 25 LMG 568 <-- NCPPB 528 <-- E. Billing; P25. CIP <- 1984, LMG <- NCPPB <- E. Billing: strain PDDCC 13

Links

Xanthomonas campestris P 25 is an aerobe, Gram-negative, oval-shaped plant pathogen that was isolated from Brassica oleracea var. gemmifera.

Gram-negative oval-shaped aerobe plant pathogen genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 5268

LMG 568,ATCC 33913,CECT 97,DSM 3586,ICMP 13,NCPPB 528,PDDCC 13,CIP 100069,CCRC 12846,CFBP 2350,CCUG 47691,BCRC 12846,CBMAI 199,ICMP 5716,KACC 10913,JCM 13371,CFBP 5241,CFBP 5251

@ref 20215

Last LPSN update 2026-02-09 11:22:15

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Lysobacterales

Family Lysobacteraceae

Genus Xanthomonas

Species Xanthomonas campestris

Full scientific name Xanthomonas campestris (Pammel 1895) Dowson 1939 (Approved Lists 1980)

Synonyms (2)

"Bacillus campestris"
"Phytomonas campestris"

BacDive ID	Other strains from **Xanthomonas campestris** (70)	Type strain
17579	X. campestris B47, Q 18, DSM 1050, ICPB XC 135, NCPPB 1929, ...
17580	X. campestris 1, DSM 1526, ATCC 29497, DSM 60151
17581	X. campestris 3, DSM 2405, ATCC 29498, DSM 60153
17582	X. campestris 14, DSM 2406, ATCC 29499, DSM 60163
17583	X. campestris 32, DSM 2407, ATCC 29500, DSM 60181
17585	X. campestris DSM 19000, ATCC 13951, NRRL B-1459, JCM 20529, ...
17586	X. campestris DSM 50852, DSM 60159
17587	X. campestris DSM 50851, DSM 60128
17596	X. campestris DSM 3850, ATCC 11672, NCPPB 571, JCM 20466, ...
100641	X. campestris STI09699(IMET), RNSH203, A167, IMET 9702, ...
100642	X. campestris STI09592(IMET), IMET 7307, IMET 9592, IMET ...
100643	X. campestris STI07313(IMET), N374,
100644	X. campestris STI09701(IMET), A130, IMET 9701
100645	X. campestris STI09702(IMET), RNSH203, A167, IMET 9702, ...
100646	X. campestris STI09697(IMET), A246, NCPF 1066, IMET 9697
100647	X. campestris STI09694(IMET), A115, IMET 9694
100648	X. campestris STI09695(IMET), A171, IMET 9695, RV 27823, ...
137146	X. campestris 596.3, CIP 74.23, CNPB 1121, CFPB 1121
149967	X. campestris CCUG 38768, NCPPB 1926, LMG 7303
149968	X. campestris CCUG 38769, NCPPB 2985, LMG 7314
157534	X. campestris IMI 349486
157535	X. campestris IMI 371797
157536	X. campestris IMI 375299
157537	X. campestris IMI 377425
157538	X. campestris IMI 377746
157539	X. campestris IMI 379428
157540	X. campestris IMI 379774
157541	X. campestris IMI 386925
157542	X. campestris IMI 349464
157543	X. campestris IMI 349483
157544	X. campestris IMI 349476
157545	X. campestris IMI 349474
157546	X. campestris IMI 349465
157547	X. campestris IMI 349478
157548	X. campestris IMI 349431
157549	X. campestris IMI 349458
157550	X. campestris IMI 349456
157551	X. campestris IMI 349468
157552	X. campestris IMI 349479
157553	X. campestris IMI 349482
157554	X. campestris IMI 349488
157555	X. campestris IMI 349467
157556	X. campestris IMI 349480
157557	X. campestris IMI 349452
157558	X. campestris IMI 349471
157559	X. campestris IMI 349485
157560	X. campestris IMI 349451
157561	X. campestris IMI 349477
157562	X. campestris IMI 349473
157563	X. campestris IMI 349435
157564	X. campestris IMI 350186
157565	X. campestris IMI 349445
157566	X. campestris IMI 349475
157567	X. campestris IMI 347319
157568	X. campestris IMI 350191
157569	X. campestris IMI 349461
157570	X. campestris IMI 349462
157571	X. campestris IMI 349444
157572	X. campestris IMI 350172
157573	X. campestris IMI 350251
157574	X. campestris IMI 349447
157575	X. campestris IMI 349448
157576	X. campestris IMI 349487
157577	X. campestris IMI 349459
157578	X. campestris IMI 349466
157579	X. campestris IMI 349443
157580	X. campestris IMI 349460
157581	X. campestris IMI 349469
157582	X. campestris IMI 349457
162944	X. campestris JCM 20469, ATCC 23390, IAM 12310, ICMP 309, ...

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
125438	negative		98.75
125439	negative		99
117116	negative	oval-shaped

Pigmentation

@ref	Production	Name
117116		Pyocyanin

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
1411	NUTRIENT AGAR (DSMZ Medium 1)	Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
1411	R2A MEDIUM (DSMZ Medium 830)	Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
38386	MEDIUM 3 - Columbia agar		Columbia agar (39.000 g);distilled water (1000.000 ml)
117116	CIP Medium 3	Medium recipe at CIP
117116	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
1411	positive	growth	28
38386	positive	growth	25
57820	positive	growth	28
67770	positive	growth	28
117116	positive	growth	10-37
117116	negative	growth	41

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
57820	aerobe
117116	obligate aerobe
125439	obligate aerobe	99.6

Spore formation

@ref	Spore formation	Confidence
125439		95.7

Halophily

@ref	Salt	Growth	Tested relation	Concentration
117116	NaCl	positive	growth	0-2 %
117116	NaCl		growth	4 %
117116	NaCl		growth	6 %
117116	NaCl		growth	8 %
117116	NaCl		growth	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
22958	16763 ChEBI	2-oxobutanoate	+	respiration
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
22958	22599 ChEBI	arabinose	-	builds acid from
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
22958	17057 ChEBI	cellobiose	+	builds acid from
117116	16947 ChEBI	citrate	+	carbon source
22958	30612 ChEBI	D-glucarate	+	respiration
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	+	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
117116	4853 ChEBI	esculin	+	hydrolysis
68369	4853 ChEBI	esculin	+	hydrolysis	from API 20NE
22958	15740 ChEBI	formate	-	respiration
22958	5291 ChEBI	gelatin	-	hydrolysis
68369	5291 ChEBI	gelatin	+	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
22958	17234 ChEBI	glucose	+	builds acid from
22958	15978 ChEBI	glycerol 3-phosphate	+	respiration
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
22958	17196 ChEBI	L-asparagine	-	respiration
22958	29991 ChEBI	L-aspartate	-	respiration
22958	15729 ChEBI	L-ornithine	-	respiration
22958	16857 ChEBI	L-threonine	+	respiration
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
22958	29864 ChEBI	mannitol	+	builds acid from
68369	59640 ChEBI	N-acetylglucosamine	+	assimilation	from API 20NE
117116	17632 ChEBI	nitrate	-	reduction
117116	17632 ChEBI	nitrate	-	respiration
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
117116	16301 ChEBI	nitrite	-	reduction
22958	17272 ChEBI	propionate	+	respiration
22958	16634 ChEBI	raffinose	+	respiration
22958	30911 ChEBI	sorbitol	-	builds acid from
22958	28017 ChEBI	starch	+	hydrolysis
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE
22958	16704 ChEBI	uridine	-	respiration
22958	27248 ChEBI	urocanic acid	+	respiration

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE
117116	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
117116	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
117116	amylase	+
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
117116	beta-galactosidase	+	3.2.1.23
68369	beta-glucosidase	+	3.2.1.21	from API 20NE
68382	beta-glucuronidase	-	3.2.1.31	from API zym
117116	caseinase	+	3.4.21.50
117116	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68369	cytochrome oxidase	-	1.9.3.1	from API 20NE
117116	DNase	+
68382	esterase (C 4)	-		from API zym
22958	gelatinase	-
117116	gelatinase	+/-
68369	gelatinase	+		from API 20NE
117116	lecithinase	+
68382	leucine arylamidase	+	3.4.11.1	from API zym
117116	lipase	+
68382	lipase (C 14)	-		from API zym
117116	lysine decarboxylase	-	4.1.1.18
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
117116	ornithine decarboxylase	-	4.1.1.17
117116	oxidase	+
117116	tryptophan deaminase	-
117116	tween esterase	+
117116	urease	-	3.5.1.5
68369	urease	-	3.5.1.5	from API 20NE

Fatty acid profile

Metadata FA analysis

@ref

57820

Fatty acid	Percentage	ECL
C15:0 ISO	31	14.621
C15:0 ANTEISO	14.7	14.711
C17:1 ω9c ISO	10.9	16.416
C16:1 ω7c	9.5	15.819
C17:0 iso	6.5	16.629
C11:0 iso	4.2	10.605
C13:0 ISO 3OH	3.3	14.11
C16:0	2.4	16
C11:0 ISO 3OH	2.1	12.09
C16:0 iso	1.6	15.626
C17:1 ω8c	1.5	16.792
C15:0	1.5	15
C12:0 3OH	1.3	13.455
C16:1 ω9c	1.2	15.774
unknown 11.798	1	11.798
C15:1 ISO F	0.9	14.414
C18:2 ω6,9c/C18:0 ANTE	0.8	17.724
C17:0 anteiso	0.8	16.722
C15:1 ω6c	0.7	14.856
C14:0	0.7	14
C18:1 ω9c	0.6	17.769
C10:0	0.5	10
C17:1 ω6c	0.4	16.862
C14:0 ISO	0.4	13.618
C17:1 ISO I/C16:0 DMA	0.4	16.481
C17:0 iso 3OH	0.3	18.161
C11:0 3OH	0.3	12.441
C17:0	0.3	17
C13:0 2OH	0.3	14.191
C11:0 ANTEISO	0.2	10.693
Unidentified	0.2	12.58

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
57820	-	+	-	+	-	+	+	-	+	+	+	+	+	+	-	-	+	+	-	-
117116	-	+	-	-	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
57820	-	-	-	-	-	+	+	+	+	-	+	-	+	-	-	-	-	+	+	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
117116	not determinedn.d.	+	+	+	+	+	-	+	+	-	+	+	-	-	-	-	+	-	-	+	-	+	+	-	-	+	-	-	-	-	-	-	+	-	-	-	-	-	-	-	+	-	-	-	+	+	-	-	-	-	+	-	+	-	+	-	-	-	-	-	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	+	+	-	-	-	-	-	-	-	-	-	+	-	-	+	+	+	+	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)

Isolation

@ref	Sample type	Host species	Country	Country ISO 3 Code	Continent	Sampling date
1411	Brassica oleracea var. gemmifera	Brassica oleracea var. gemmifera	United Kingdom	GBR	Europe
57820	Brassica oleracea (Gemmifera Group),stem		United Kingdom	GBR	Europe	1957
67770	Brassica oleracea var. gemmifera	Brassica oleracea var. gemmifera	United Kingdom	GBR	Europe
117116	Food, Brassica oleracea var. gemmifera		United Kingdom	GBR	Europe

Taxonmaps

69479

Global distribution of 16S sequence X95917 (>99% sequence identity) for Xanthomonas from Microbeatlas

Aquatic Samples	6826
Soil Samples	10026
Animal Samples	28252
Plant Samples	7048
Total Samples	52152

Interaction and safety

Risk assessment

@ref	Pathogenicity plant	Biosafety level	Biosafety level comment
1411		1	Risk group (German classification) According to TRBA 466
117116		1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM714v1 assembly for Xanthomonas campestris pv. campestris str. ATCC 33913	complete	GCA_000007145	190485.4	637000344	190485	99.27
124043	ASM4570907v1 assembly for Xanthomonas campestris pv. campestris CFBP 5241	complete	GCA_045709075			340	98.35
66792	ASM2081313v1 assembly for Xanthomonas campestris pv. campestris NCPPB 528	contig	GCA_020813135	340.306	8112405259	340	64.44
124043	ASM3502382v1 assembly for Xanthomonas campestris pv. campestris WHRI 5212 (NCPPB 528)	contig	GCA_035023825			340	39.2

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	X.campestris 16S rRNA gene	X95917	1502		339
124043	Xanthomonas campestris strain LMG568 16S-23S ribosomal RNA intergenic spacer, complete sequence.	AF209755	509		339

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Xanthomonas campestris pv. campestris str. ATCC 33913
PATRIC: 190485.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	95.70	no
125439	motility	BacteriaNetⓘ	yes	81.10	no
125439	gram_stain	BacteriaNetⓘ	negative	99.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Xanthomonas campestris pv. campestris str. ATCC 33913 ATCC 33913
NCBI: GCA_000007145.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.75	no
125438	anaerobic	anaerobicⓘ	no	98.71	yes
125438	aerobic	aerobicⓘ	yes	87.46	no
125438	spore-forming	spore-formingⓘ	no	88.38	no
125438	thermophilic	thermophileⓘ	no	99.50	yes
125438	flagellated	motile2+ⓘ	yes	66.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Hop biomass waste against fire blight and black rot: an eco-friendly approach to crop protection.	Fontana R, Leto L, Ortore MG, Guarrasi V, Pula W, Esposito E, Bigi F, Chiancone B, Marconi P.	Front Microbiol	10.3389/fmicb.2025.1665767	2025
	New glycoside hydrolase families of beta-1,2-glucanases.	Nakajima M, Tanaka N, Motouchi S, Kobayashi K, Shimizu H, Abe K, Hosoyamada N, Abara N, Morimoto N, Hiramoto N, Nakata R, Takashima A, Hosoki M, Suzuki S, Shikano K, Fujimaru T, Imagawa S, Kawadai Y, Wang Z, Kitano Y, Nihira T, Nakai H, Taguchi H.	Protein Sci	10.1002/pro.70147	2025
Proteome	Interaction network and mass spectrometry data of Xanthomonas citri subsp. citri surface proteins from differential proteomic analysis of infectious and non-infectious cells.	Carnielli CM, Artier J, Franco de Oliveira JC, Novo-Mansur MT.	Data Brief	10.1016/j.dib.2016.07.054	2016
	Data on a thermostable enzymatic one-pot reaction for the production of a high-value compound from l-arabinose.	Bawn M, Subrizi F, Lye GJ, Sheppard TD, Hailes HC, Ward JM.	Data Brief	10.1016/j.dib.2018.05.140	2018
Genetics	Selective advantages favour high genomic AT-contents in intracellular elements.	Dietel AK, Merker H, Kaltenpoth M, Kost C.	PLoS Genet	10.1371/journal.pgen.1007778	2019
Enzymology	Functional expression of a bacterial xylose isomerase in Saccharomyces cerevisiae.	Brat D, Boles E, Wiedemann B.	Appl Environ Microbiol	10.1128/aem.02522-08	2009
	Microbial xanthan production from forage sorghum straw: Influence of substrate, strains, and process conditions on xanthan properties.	Bahrami N, Asadollahi MA, Amiri H, Ashengroph M.	Int J Biol Macromol	10.1016/j.ijbiomac.2024.138957	2025
Transcriptome	Early transcriptional changes of heavy metal resistance and multiple efflux genes in Xanthomonas campestris pv. campestris under copper and heavy metal ion stress.	Ramnarine SDB, Ali O, Jayaraman J, Ramsubhag A.	BMC Microbiol	10.1186/s12866-024-03206-7	2024
	Divalent Cations (Ca²⁺, Mg²⁺, Mn²⁺, Fe²⁺, Ni²⁺, and Zn²⁺) Enhance Growth of Xanthomonas citri and X. campestris by Reducing Generation Time.	Merighi DGS, Goncalves CAB, Ferrari ASA, Andrade MO, Guzzo CR.	ACS Omega	10.1021/acsomega.5c02786	2025
	Genome sequence data for 61 isolates of Xanthomonas campestris pv. campestris from Brassica crops in Serbia.	Popovic Milovanovic T, Greer S, Ilicic R, Jelusic A, Bown D, Hussain M, Harrison J, Grant M, Vicente JG, Studholme DJ.	Access Microbiol	10.1099/acmi.0.000870.v3	2024
Genetics	Comparative Genomic Analysis of Xanthomonas campestris pv. campestris Isolates BJSJQ20200612 and GSXT20191014 Provides Novel Insights Into Their Genetic Variability and Virulence.	Chen D, Zhong X, Cui J, Li H, Han R, Yue X, Xie J, Kang J.	Front Microbiol	10.3389/fmicb.2022.833318	2022
	The type-III effectors-based multiplex PCR for detection of Xanthomonas campestris pv. campestris causing black rot disease in crucifer crops.	Singh D, Singh D, Kesharwani AK, Avasthi AS.	3 Biotech	10.1007/s13205-023-03691-z	2023
	Complete Genome Sequence of Xanthomonas campestris pv. campestris SB80, a Race 4 Strain Isolated from White Head Cabbage in Turkey.	Erken Meral S, Bibi S, Diaz Rodriguez CA, Menkovic J, Bernal AJ, Koebnik R.	Microbiol Resour Announc	10.1128/mra.00022-22	2022
	Biotechnological potential of silver nanoparticles synthesized by green method to control phytopathogenic bacteria: contributions from a proteomic analysis.	Santos IR, Ribeiro DG, Mendes PDN, Fontes W, Luz IS, Silva LP, Mehta A.	Braz J Microbiol	10.1007/s42770-024-01538-0	2024
	Antimicrobial Peptides as Part of the Arsenal of Constitutive and Inducible Seed Defences in Tomato Seed Exudates Against Pathogens.	Tarkowski LP, Hubert B, Marchi M, Tranchant C, Boutet S, Brosse C, Causse M, Balliau T, Blein-Nicolas M, Corso M, Aubourg S, Verdier J.	Mol Plant Pathol	10.1111/mpp.70164	2025
Genetics	Draft genome sequences for ten strains of Xanthomonas species that have phylogenomic importance.	Harrison J, Hussain RMF, Greer SF, Ntoukakis V, Aspin A, Vicente JG, Grant M, Studholme DJ.	Access Microbiol	10.1099/acmi.0.000532.v3	2023
	Stomata-targeted nanocarriers enhance plant defense against pathogen colonization.	Puangpathumanond S, Chee HL, Sevencan C, Yang X, Lau OS, Lew TTS.	Nat Commun	10.1038/s41467-025-60112-w	2025
	Effects of Flavonoids and Phenols from Moringa oleifera Leaf Extracts on Biofilm Processes in Xanthomonas campestris pv. campestris.	Fontana R, Caproni A, Sicurella M, Manfredini S, Baldisserotto A, Marconi P.	Plants (Basel)	10.3390/plants12071508	2023
	Acetobacteraceae as exopolysaccharide producers: Current state of knowledge and further perspectives.	Wunsche J, Schmid J.	Front Bioeng Biotechnol	10.3389/fbioe.2023.1166618	2023
	Xanthomonas spp. Infecting Araceae and Araliaceae: Taxonomy, Phylogeny, and Potential Virulence Mechanisms.	Chuang SC, Dobhal S, Keith LM, Alvarez AM, Arif M.	Biology (Basel)	10.3390/biology14070766	2025
	Bacterial surface-exposed lipoproteins and sortase-mediated anchored cell surface proteins in plant infection.	de Sandozequi A, Martinez-Anaya C.	Microbiologyopen	10.1002/mbo3.1382	2023
	Biological effects of Thymol loaded chitosan nanoparticles (TCNPs) on bacterial plant pathogen Xanthomonas campestris pv. campestris.	Sreelatha S, Kumar N, Rajani S.	Front Microbiol	10.3389/fmicb.2022.1085113	2022
	Stenotrophomonas rhizophila Ep2.2 inhibits growth of Botrytis cinerea through the emission of volatile organic compounds, restricts leaf infection and primes defense genes.	Raio A, Brilli F, Neri L, Baraldi R, Orlando F, Pugliesi C, Chen X, Baccelli I.	Front Plant Sci	10.3389/fpls.2023.1235669	2023
	Development of PCR-Based Molecular Marker for Detection of Xanthomonas campestris pv. campestris Race 6, the Causative Agent of Black Rot of Brassicas.	Afrin KS, Rahim MA, Rubel MH, Park JI, Jung HJ, Kim HT, Nou IS.	Plant Pathol J	10.5423/ppj.oa.06.2020.0103	2020
	Genetic Diversity and Population Structure of the Xanthomonas campestris pv. campestris Strains Affecting Cabbages in China Revealed by MLST and Rep-PCR Based Genotyping.	Chen G, Kong C, Yang L, Zhuang M, Zhang Y, Wang Y, Ji J, Fang Z, Lv H.	Plant Pathol J	10.5423/ppj.oa.06.2021.0088	2021
	McvR, a single domain response regulator regulates motility and virulence in the plant pathogen Xanthomonas campestris.	Li RF, Ren PD, Liu QQ, Yao JL, Wu L, Zhu GN, Xian XY, Tang JL, Lu GT.	Mol Plant Pathol	10.1111/mpp.13186	2022
	Draft Genome Sequences of Two New Zealand Xanthomonas campestris pv. campestris Isolates, ICMP 4013 and ICMP 21080.	Desai D, Li JH, van Zijll de Jong E, Braun R, Pitman A, Visnovsky S, Hampton J, Christey M.	Genome Announc	10.1128/genomea.01247-15	2015
	Transcriptomic Reprograming of Xanthomonas campestris pv. campestris after Treatment with Hydrolytic Products Derived from Glucosinolates.	Madloo P, Lema M, Rodriguez VM, Soengas P.	Plants (Basel)	10.3390/plants10081656	2021
	Draft Genome Sequence of the Xanthan Producer Xanthomonas campestris LMG 8031.	Schmid J, Huptas C, Wenning M.	Genome Announc	10.1128/genomea.01069-16	2016
	Random peptide mixtures as new crop protection agents.	Topman S, Tamir-Ariel D, Bochnic-Tamir H, Stern Bauer T, Shafir S, Burdman S, Hayouka Z.	Microb Biotechnol	10.1111/1751-7915.13258	2018
	The Repertoire of Solute-Binding Proteins of Model Bacteria Reveals Large Differences in Number, Type, and Ligand Range.	Ortega A, Matilla MA, Krell T.	Microbiol Spectr	10.1128/spectrum.02054-22	2022
	Effects of NaCl on Antioxidant, Antifungal, and Antibacterial Activities in Safflower Essential Oils.	Attia H, Harrathi J, Alamer KH, Alsalmi FA, Magne C, Khalil M.	Plants (Basel)	10.3390/plants10122809	2021
Genetics	Phylogenomics insights into order and families of Lysobacterales.	Kumar S, Bansal K, Patil PP, Patil PB.	Access Microbiol	10.1099/acmi.0.000015	2019
	Evaluating comparative beta-glucan production aptitude of Saccharomyces cerevisiae, Aspergillus oryzae, Xanthomonas campestris, and Bacillus natto.	Utama GL, Dio C, Sulistiyo J, Yee Chye F, Lembong E, Cahyana Y, Kumar Verma D, Thakur M, Patel AR, Singh S.	Saudi J Biol Sci	10.1016/j.sjbs.2021.07.051	2021
	Complete Genome Sequence of Xanthomonas campestris pv. campestris Strain 17 from Taiwan.	Liu YC, Wang SC, Yu YJ, Fung KM, Yang MT, Tseng YH, Tsai SF, Sun HS, Lyu PC, Chou SH.	Genome Announc	10.1128/genomea.01466-15	2015
	Genome Sequences of the Race 1 and Race 4 Xanthomonas campestris pv. campestris Strains CFBP 1869 and CFBP 5817.	Bolot S, Cerutti A, Carrere S, Arlat M, Fischer-Le Saux M, Portier P, Poussier S, Jacques MA, Noel LD.	Genome Announc	10.1128/genomea.01023-15	2015
	New Cyclic Pentapeptides from the Mangrove-Derived Aspergillus fumigatus GXIMD 03099.	Wang Y, Cao G, Gan Y, Lin X, Yi X, Zhao L, Liu Y, Gao C, Bai M.	Mar Drugs	10.3390/md22060282	2024
	PilG and PilH antagonistically control flagellum-dependent and pili-dependent motility in the phytopathogen Xanthomonas campestris pv. campestris.	Qi YH, Huang L, Liu GF, Leng M, Lu GT.	BMC Microbiol	10.1186/s12866-020-1712-3	2020
	EnvC Homolog Encoded by Xanthomonas citri subsp. citri Is Necessary for Cell Division and Virulence.	Pena MM, Martins TZ, Teper D, Zamuner C, Alves HA, Ferreira H, Wang N, Ferro MIT, Ferro JA.	Microorganisms	10.3390/microorganisms12040691	2024
	Genome Sequence of Xanthomonas campestris pv. campestris Strain Xca5.	Bolot S, Guy E, Carrere S, Barbe V, Arlat M, Noel LD.	Genome Announc	10.1128/genomea.00032-12	2013
	The type VI secretion system of Xanthomonas phaseoli pv. manihotis is involved in virulence and in vitro motility.	Montenegro Benavides NA, Alvarez B A, Arrieta-Ortiz ML, Rodriguez-R LM, Botero D, Tabima JF, Castiblanco L, Trujillo C, Restrepo S, Bernal A.	BMC Microbiol	10.1186/s12866-020-02066-1	2021
	Comparative Genomic Analysis and Rapid Molecular Detection of Xanthomonas euvesicatoria Using Unique ATP-Dependent DNA Helicase recQ, hrpB1, and hrpB2 Genes Isolated from Physalis pubescens in China.	Siddique F, Mingxiu Y, Xiaofeng X, Zhe N, Younis H, Lili P, Junhua Z.	Plant Pathol J	10.5423/ppj.oa.08.2022.0119	2023
Genetics	Whole-Genome Re-Alignment Facilitates Development of Specific Molecular Markers for Races 1 and 4 of Xanthomonas campestris pv. campestris, the Cause of Black Rot Disease in Brassica oleracea.	Rubel MH, Robin AHK, Natarajan S, Vicente JG, Kim HT, Park JI, Nou IS.	Int J Mol Sci	10.3390/ijms18122523	2017
	Genome-Wide Analysis of beta-Galactosidases in Xanthomonas campestris pv. campestris 8004.	Wang H, Shi C, Xie Q, Wang Y, Liu S, Li C, He C, Tao J.	Front Microbiol	10.3389/fmicb.2018.00957	2018
	Type II Toxin-Antitoxin Distribution and Adaptive Aspects on Xanthomonas Genomes: Focus on Xanthomonas citri.	Martins PM, Machado MA, Silva NV, Takita MA, de Souza AA.	Front Microbiol	10.3389/fmicb.2016.00652	2016
	Genome Sequences of Three Atypical Xanthomonas campestris pv. campestris Strains, CN14, CN15, and CN16.	Bolot S, Roux B, Carrere S, Jiang BL, Tang JL, Arlat M, Noel LD.	Genome Announc	10.1128/genomea.00465-13	2013
Metabolism	Conserved unique peptide patterns (CUPP) online platform: peptide-based functional annotation of carbohydrate active enzymes.	Barrett K, Hunt CJ, Lange L, Meyer AS.	Nucleic Acids Res	10.1093/nar/gkaa375	2020
	Microbiological and molecular identification of bacterial species isolated from nasal and oropharyngeal mucosa of fuel workers in Riyadh, Saudi Arabia.	AlWakeel SS.	Saudi J Biol Sci	10.1016/j.sjbs.2015.12.001	2017
Enzymology	Two forms of phosphomannomutase in gammaproteobacteria: The overlooked membrane-bound form of AlgC is required for twitching motility of Lysobacter enzymogenes.	Qian G, Fei S, Galperin MY.	Environ Microbiol	10.1111/1462-2920.14615	2019
Enzymology	The role of OleA His285 in orchestration of long-chain acyl-coenzyme A substrates.	Jensen MR, Goblirsch BR, Esler MA, Christenson JK, Mohamed FA, Wackett LP, Wilmot CM.	FEBS Lett	10.1002/1873-3468.13004	2018
	Diversification of Ubiquinone Biosynthesis via Gene Duplications, Transfers, Losses, and Parallel Evolution.	Kazemzadeh K, Pelosi L, Chenal C, Chobert SC, Hajj Chehade M, Jullien M, Flandrin L, Schmitt W, He Q, Bouvet E, Jarzynka M, Varoquaux N, Junier I, Pierrel F, Abby SS.	Mol Biol Evol	10.1093/molbev/msad219	2023
Pathogenicity	Polysaccharide-based liquid storage and transport media for non-refrigerated preservation of bacterial pathogens.	Hutchison JR, Brooks SM, Kennedy ZC, Pope TR, Deatherage Kaiser BL, Victry KD, Warner CL, Oxford KL, Omberg KM, Warner MG.	PLoS One	10.1371/journal.pone.0221831	2019
	Xanthomonas citri pv. viticola Affecting Grapevine in Brazil: Emergence of a Successful Monomorphic Pathogen.	Ferreira MASV, Bonneau S, Briand M, Cesbron S, Portier P, Darrasse A, Gama MAS, Barbosa MAG, Mariano RLR, Souza EB, Jacques MA.	Front Plant Sci	10.3389/fpls.2019.00489	2019
	Rapid Detection and Quantification of Viable Cells of Pectobacterium brasiliense Using Propidium Monoazide Combined with Real-Time PCR.	Li J, Chen R, Yang R, Wei X, Xie H, Shi Y, Xie X, Chai A, Fan T, Li B, Li L.	Microorganisms	10.3390/microorganisms11112808	2023
Metabolism	The ATP-dependent RNA helicase HrpB plays an important role in motility and biofilm formation in Xanthomonas citri subsp. citri.	Granato LM, Picchi SC, Andrade Mde O, Takita MA, de Souza AA, Wang N, Machado MA.	BMC Microbiol	10.1186/s12866-016-0655-1	2016
Metabolism	Active Multienzyme Assemblies for Long-Chain Olefinic Hydrocarbon Biosynthesis.	Christenson JK, Jensen MR, Goblirsch BR, Mohamed F, Zhang W, Wilmot CM, Wackett LP.	J Bacteriol	10.1128/jb.00890-16	2017
Genetics	Genome sequencing and annotation of Stenotrophomonas sp. SAM8.	Selim S, Hassan S, Hagagy N.	Genom Data	10.1016/j.gdata.2015.07.028	2015
Transcriptome	Genome sequencing and comparative analysis of the carrot bacterial blight pathogen, Xanthomonas hortorum pv. carotae M081, for insights into pathogenicity and applications in molecular diagnostics.	Kimbrel JA, Givan SA, Temple TN, Johnson KB, Chang JH.	Mol Plant Pathol	10.1111/j.1364-3703.2010.00694.x	2011
Genetics	SearchDOGS bacteria, software that provides automated identification of potentially missed genes in annotated bacterial genomes.	Oheigeartaigh SS, Armisen D, Byrne KP, Wolfe KH.	J Bacteriol	10.1128/jb.01368-13	2014
	Genome sequence of Lysobacter dokdonensis DS-58(T), a gliding bacterium isolated from soil in Dokdo, Korea.	Kwak MJ, Kwon SK, Yoon JH, Kim JF.	Stand Genomic Sci	10.1186/s40793-015-0116-8	2015
Transcriptome	Transcriptional and Antagonistic Responses of Biocontrol Strain Lysobacter enzymogenes OH11 to the Plant Pathogenic Oomycete Pythium aphanidermatum.	Zhao Y, Qian G, Chen Y, Du L, Liu F.	Front Microbiol	10.3389/fmicb.2017.01025	2017
Enzymology	OleA Glu117 is key to condensation of two fatty-acyl coenzyme A substrates in long-chain olefin biosynthesis.	Jensen MR, Goblirsch BR, Christenson JK, Esler MA, Mohamed FA, Wackett LP, Wilmot CM.	Biochem J	10.1042/bcj20170642	2017
	Natural genetic variation of Xanthomonas campestris pv. campestris pathogenicity on arabidopsis revealed by association and reverse genetics.	Guy E, Genissel A, Hajri A, Chabannes M, David P, Carrere S, Lautier M, Roux B, Boureau T, Arlat M, Poussier S, Noel LD.	mBio	10.1128/mbio.00538-12	2013
	sRNA-Xcc1, an integron-encoded transposon- and plasmid-transferred trans-acting sRNA, is under the positive control of the key virulence regulators HrpG and HrpX of Xanthomonas campestris pathovar campestris.	Chen XL, Tang DJ, Jiang RP, He YQ, Jiang BL, Lu GT, Tang JL.	RNA Biol	10.4161/rna.8.6.16690	2011
	Identification of Bradyrhizobium elkanii Genes Involved in Incompatibility with Soybean Plants Carrying the Rj4 Allele.	Faruque OM, Miwa H, Yasuda M, Fujii Y, Kaneko T, Sato S, Okazaki S.	Appl Environ Microbiol	10.1128/aem.01942-15	2015
Genetics	Complete genome sequence of Pseudomonas citronellolis P3B5, a candidate for microbial phyllo-remediation of hydrocarbon-contaminated sites.	Remus-Emsermann MNP, Schmid M, Gekenidis MT, Pelludat C, Frey JE, Ahrens CH, Drissner D.	Stand Genomic Sci	10.1186/s40793-016-0190-6	2016
Enzymology	Crystallization and preliminary diffraction analysis of the catalytic domain of major extracellular endoglucanase from Xanthomonas campestris pv. campestris.	Rosseto FR, Puhl AC, Andrade MO, Polikarpov I.	Acta Crystallogr Sect F Struct Biol Cryst Commun	10.1107/s1744309112051408	2013
Metabolism	Ankyrin-Like Protein AnkB Interacts with CatB, Affects Catalase Activity, and Enhances Resistance of Xanthomonas oryzae pv. oryzae and Xanthomonas oryzae pv. oryzicola to Phenazine-1-Carboxylic Acid.	Pan X, Xu S, Wu J, Duan Y, Zheng Z, Wang J, Song X, Zhou M.	Appl Environ Microbiol	10.1128/aem.02145-17	2018
Metabolism	Stenotrophomonas maltophilia SeITE02, a new bacterial strain suitable for bioremediation of selenite-contaminated environmental matrices.	Antonioli P, Lampis S, Chesini I, Vallini G, Rinalducci S, Zolla L, Righetti PG.	Appl Environ Microbiol	10.1128/aem.00957-07	2007
Enzymology	Crystallization and preliminary X-ray diffraction analysis of Xaa-Pro dipeptidase from Xanthomonas campestris.	Kumar A, Are VN, Ghosh B, Agrawal U, Jamdar SN, Makde RD, Sharma SM.	Acta Crystallogr F Struct Biol Commun	10.1107/s2053230x14017324	2014
Metabolism	Comparative analysis of the XopD type III secretion (T3S) effector family in plant pathogenic bacteria.	Kim JG, Taylor KW, Mudgett MB.	Mol Plant Pathol	10.1111/j.1364-3703.2011.00706.x	2011
	Pathogenicity assays restrict the species Xanthomonas campestris into three pathovars and reveal nine races within X. campestris pv. campestris	Fargier E, Manceau C.	Plant Pathol	10.1111/j.1365-3059.2007.01648.x	2007
	Biological Functions of ilvC in Branched-Chain Fatty Acid Synthesis and Diffusible Signal Factor Family Production in Xanthomonas campestris.	Li KH, Yu YH, Dong HJ, Zhang WB, Ma JC, Wang HH.	Front Microbiol	10.3389/fmicb.2017.02486	2017
Metabolism	A Secreted Chorismate Mutase from Xanthomonas arboricola pv. juglandis Attenuates Virulence and Walnut Blight Symptoms.	Assis RAB, Sagawa CHD, Zaini PA, Saxe HJ, Wilmarth PA, Phinney BS, Salemi M, Moreira LM, Dandekar AM.	Int J Mol Sci	10.3390/ijms221910374	2021
Genetics	Genomics and transcriptomics of Xanthomonas campestris species challenge the concept of core type III effectome.	Roux B, Bolot S, Guy E, Denance N, Lautier M, Jardinaud MF, Fischer-Le Saux M, Portier P, Jacques MA, Gagnevin L, Pruvost O, Lauber E, Arlat M, Carrere S, Koebnik R, Noel LD.	BMC Genomics	10.1186/s12864-015-2190-0	2015
Metabolism	Cyclic-di-GMP binds to histidine kinase RavS to control RavS-RavR phosphotransfer and regulates the bacterial lifestyle transition between virulence and swimming.	Cheng ST, Wang FF, Qian W.	PLoS Pathog	10.1371/journal.ppat.1007952	2019
	Halotolerant biofilm-producing rhizobacteria mitigate seawater-induced salt stress and promote growth of tomato.	Haque MM, Biswas MS, Mosharaf MK, Haque MA, Islam MS, Nahar K, Islam MM, Shozib HB, Islam MM, Ferdous-E-Elahi.	Sci Rep	10.1038/s41598-022-09519-9	2022
	Systems Biology of Microbial Exopolysaccharides Production.	Ates O.	Front Bioeng Biotechnol	10.3389/fbioe.2015.00200	2015
	A plasmid toolbox for controlled gene expression across the Proteobacteria.	Schuster LA, Reisch CR.	Nucleic Acids Res	10.1093/nar/gkab496	2021
	Impairment of a cyanobacterial glycosyltransferase that modifies a pilin results in biofilm development.	Suban S, Sendersky E, Golden SS, Schwarz R.	Environ Microbiol Rep	10.1111/1758-2229.13050	2022
Metabolism	The plant pathogen Xanthomonas campestris pv. campestris exploits N-acetylglucosamine during infection.	Boulanger A, Zischek C, Lautier M, Jamet S, Rival P, Carrere S, Arlat M, Lauber E.	mBio	10.1128/mbio.01527-14	2014
	Bio-Strings: A Relational Database Data-Type for Dealing with Large Biosequences.	Lifschitz S, Haeusler EH, Catanho M, Miranda AB, Armas EM, Heine A, Moreira SGMP, Tristao C.	BioTech (Basel)	10.3390/biotech11030031	2022
Metabolism	Flagellar biogenesis of Xanthomonas campestris requires the alternative sigma factors RpoN2 and FliA and is temporally regulated by FlhA, FlhB, and FlgM.	Yang TC, Leu YW, Chang-Chien HC, Hu RM.	J Bacteriol	10.1128/jb.01152-08	2009
Metabolism	Identification and biosynthesis of a novel xanthomonadin-dialkylresorcinol-hybrid from Azoarcus sp. BH72.	Schoner TA, Fuchs SW, Reinhold-Hurek B, Bode HB.	PLoS One	10.1371/journal.pone.0090922	2014
	Exploring the sequence-function space of microbial fucosidases.	Martinez Gascuena A, Wu H, Wang R, Owen CD, Hernando PJ, Monaco S, Penner M, Xing K, Le Gall G, Gardner R, Ndeh D, Urbanowicz PA, Spencer DIR, Walsh M, Angulo J, Juge N.	Commun Chem	10.1038/s42004-024-01212-4	2024
Metabolism	Novel roles of SoxR, a transcriptional regulator from Xanthomonas campestris, in sensing redox-cycling drugs and regulating a protective gene that have overall implications for bacterial stress physiology and virulence on a host plant.	Mahavihakanont A, Charoenlap N, Namchaiw P, Eiamphungporn W, Chattrakarn S, Vattanaviboon P, Mongkolsuk S.	J Bacteriol	10.1128/jb.05603-11	2012
Enzymology	Structure and function of microbial alpha-l-fucosidases: a mini review.	Wu H, Owen CD, Juge N.	Essays Biochem	10.1042/ebc20220158	2023
	Modified Monosaccharides Content of Xanthan Gum Impairs Citrus Canker Disease by Affecting the Epiphytic Lifestyle of Xanthomonas citri subsp. citri.	Picchi SC, Granato LM, Franzini MJF, Andrade MO, Takita MA, Machado MA, de Souza AA.	Microorganisms	10.3390/microorganisms9061176	2021
Enzymology	Transmission of plant-pathogenic bacteria by nonhost seeds without induction of an associated defense reaction at emergence.	Darrasse A, Darsonval A, Boureau T, Brisset MN, Durand K, Jacques MA.	Appl Environ Microbiol	10.1128/aem.01098-10	2010
Metabolism	AvrAC(Xcc8004), a type III effector with a leucine-rich repeat domain from Xanthomonas campestris pathovar campestris confers avirulence in vascular tissues of Arabidopsis thaliana ecotype Col-0.	Xu RQ, Blanvillain S, Feng JX, Jiang BL, Li XZ, Wei HY, Kroj T, Lauber E, Roby D, Chen B, He YQ, Lu GT, Tang DJ, Vasse J, Arlat M, Tang JL.	J Bacteriol	10.1128/jb.00978-07	2008
Genetics	Ecological genomics in Xanthomonas: the nature of genetic adaptation with homologous recombination and host shifts.	Huang CL, Pu PH, Huang HJ, Sung HM, Liaw HJ, Chen YM, Chen CM, Huang MB, Osada N, Gojobori T, Pai TW, Chen YT, Hwang CC, Chiang TY.	BMC Genomics	10.1186/s12864-015-1369-8	2015
Metabolism	Proteome Analysis of Walnut Bacterial Blight Disease.	H D Sagawa C, de A B Assis R, Zaini PA, Wilmarth PA, Phinney BS, Moreira LM, Dandekar AM.	Int J Mol Sci	10.3390/ijms21207453	2020
Enzymology	Purification and characterization of OleA from Xanthomonas campestris and demonstration of a non-decarboxylative Claisen condensation reaction.	Frias JA, Richman JE, Erickson JS, Wackett LP.	J Biol Chem	10.1074/jbc.m110.216127	2011
Genetics	Genome Sequence of Type Strains of Genus Stenotrophomonas.	Patil PP, Midha S, Kumar S, Patil PB.	Front Microbiol	10.3389/fmicb.2016.00309	2016
	Functional exploration of the glycoside hydrolase family GH113.	Couturier M, Touvrey-Loiodice M, Terrapon N, Drula E, Buon L, Chirat C, Henrissat B, Helbert W.	PLoS One	10.1371/journal.pone.0267509	2022
Metabolism	Identification and regulation of the N-acetylglucosamine utilization pathway of the plant pathogenic bacterium Xanthomonas campestris pv. campestris.	Boulanger A, Dejean G, Lautier M, Glories M, Zischek C, Arlat M, Lauber E.	J Bacteriol	10.1128/jb.01418-09	2010
	Preparation, crystallization and preliminary X-ray characterization of a conserved hypothetical protein XC1692 from Xanthomonas campestris.	Chin KH, Huang ZW, Wei KC, Chou CC, Lee CC, Shr HL, Gao FP, Lyu PC, Wang AH, Chou SH.	Acta Crystallogr Sect F Struct Biol Cryst Commun	10.1107/s1744309105018798	2005
Enzymology	Identification of Pectin Degrading Enzymes Secreted by Xanthomonas oryzae pv. oryzae and Determination of Their Role in Virulence on Rice.	Tayi L, Maku RV, Patel HK, Sonti RV.	PLoS One	10.1371/journal.pone.0166396	2016
	Pyridine Nucleotide Coenzyme Specificity of p-Hydroxybenzoate Hydroxylase and Related Flavoprotein Monooxygenases.	Westphal AH, Tischler D, Heinke F, Hofmann S, Groning JAD, Labudde D, van Berkel WJH.	Front Microbiol	10.3389/fmicb.2018.03050	2018
	Comparative Genomics of Pathogenic and Nonpathogenic Strains of Xanthomonas arboricola Unveil Molecular and Evolutionary Events Linked to Pathoadaptation.	Cesbron S, Briand M, Essakhi S, Gironde S, Boureau T, Manceau C, Fischer-Le Saux M, Jacques MA.	Front Plant Sci	10.3389/fpls.2015.01126	2015
	Conformational changes associated with the binding of zinc acetate at the putative active site of XcTcmJ, a cupin from Xanthomonas campestris pv. campestris.	Axelrod HL, Kozbial P, McMullan D, Krishna SS, Miller MD, Abdubek P, Acosta C, Astakhova T, Carlton D, Caruthers J, Chiu HJ, Clayton T, Deller MC, Duan L, Elias Y, Feuerhelm J, Grzechnik SK, Grant JC, Han GW, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Kumar A, Marciano D, Morse AT, Murphy KD, Nigoghossian E, Okach L, Oommachen S, Paulsen J, Reyes R, Rife CL, Tien HJ, Trout CV, van den Bedem H, Weekes D, White A, Xu Q, Zubieta C, Hodgson KO, Wooley J, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Wilson IA.	Acta Crystallogr Sect F Struct Biol Cryst Commun	10.1107/s1744309109021988	2010
Metabolism	The plant-associated bacterium Stenotrophomonas rhizophila expresses a new enzyme for the synthesis of the compatible solute glucosylglycerol.	Hagemann M, Ribbeck-Busch K, Klahn S, Hasse D, Steinbruch R, Berg G.	J Bacteriol	10.1128/jb.00643-08	2008
Enzymology	An adenosine kinase exists in Xanthomonas campestris pathovar campestris and is involved in extracellular polysaccharide production, cell motility, and virulence.	Lu GT, Tang YQ, Li CY, Li RF, An SQ, Feng JX, He YQ, Jiang BL, Tang DJ, Tang JL.	J Bacteriol	10.1128/jb.00009-09	2009
	Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp.	Bogdanove AJ, Koebnik R, Lu H, Furutani A, Angiuoli SV, Patil PB, Van Sluys MA, Ryan RP, Meyer DF, Han SW, Aparna G, Rajaram M, Delcher AL, Phillippy AM, Puiu D, Schatz MC, Shumway M, Sommer DD, Trapnell C, Benahmed F, Dimitrov G, Madupu R, Radune D, Sullivan S, Jha G, Ishihara H, Lee SW, Pandey A, Sharma V, Sriariyanun M, Szurek B, Vera-Cruz CM, Dorman KS, Ronald PC, Verdier V, Dow JM, Sonti RV, Tsuge S, Brendel VP, Rabinowicz PD, Leach JE, White FF, Salzberg SL.	J Bacteriol	10.1128/jb.05262-11	2011
	Preliminary X-ray analysis of XC5848, a hypothetical ORFan protein with an Sm-like motif from Xanthomonas campestris.	Ruan SK, Chin KH, Shr HL, Lyu PC, Wang AH, Chou SH.	Acta Crystallogr Sect F Struct Biol Cryst Commun	10.1107/s1744309106052730	2007
	Genomic insights into the evolutionary origin of Xanthomonas axonopodis pv. citri and its ecological relatives.	Midha S, Patil PB.	Appl Environ Microbiol	10.1128/aem.01654-14	2014
	Large-Scale Molecular Evolutionary Analysis Uncovers a Variety of Polynucleotide Kinase Clp1 Family Proteins in the Three Domains of Life.	Saito M, Sato A, Nagata S, Tamaki S, Tomita M, Suzuki H, Kanai A.	Genome Biol Evol	10.1093/gbe/evz195	2019
Phylogeny	Identification of Xanthomonas fragariae, Xanthomonas axonopodis pv. phaseoli, and Xanthomonas fuscans subsp. fuscans with novel markers and using a dot blot platform coupled with automatic data analysis.	Albuquerque P, Caridade CM, Marcal AR, Cruz J, Cruz L, Santos CL, Mendes MV, Tavares F.	Appl Environ Microbiol	10.1128/aem.05189-11	2011
Metabolism	Substrate Trapping in Crystals of the Thiolase OleA Identifies Three Channels That Enable Long Chain Olefin Biosynthesis.	Goblirsch BR, Jensen MR, Mohamed FA, Wackett LP, Wilmot CM.	J Biol Chem	10.1074/jbc.m116.760892	2016
Genetics	Identification and characterization of repetitive extragenic palindromes (REP)-associated tyrosine transposases: implications for REP evolution and dynamics in bacterial genomes.	Nunvar J, Huckova T, Licha I.	BMC Genomics	10.1186/1471-2164-11-44	2010
Metabolism	Cloning, purification, crystallization and preliminary X-ray analysis of XC229, a conserved hypothetical protein from Xanthomonas campestris.	Chin KH, Kuo WT, Chou CC, Shr HL, Lyu PC, Wang AH, Chou SH.	Acta Crystallogr Sect F Struct Biol Cryst Commun	10.1107/s1744309105018944	2005
Phylogeny	Genome-scale reconstructions to assess metabolic phylogeny and organism clustering.	Schulz C, Almaas E.	PLoS One	10.1371/journal.pone.0240953	2020
Genetics	Xanthomonas campestris pv. campestris (cause of black rot of crucifers) in the genomic era is still a worldwide threat to brassica crops.	Vicente JG, Holub EB.	Mol Plant Pathol	10.1111/j.1364-3703.2012.00833.x	2013
Metabolism	Cloning, purification crystallization and preliminary X-ray characterization of a conserved hypothetical protein XC6422 from Xanthomonas campestris.	Yang CY, Chin KH, Chou CC, Shr HL, Gao FP, Lyu PC, Wang AH, Chou SH.	Acta Crystallogr Sect F Struct Biol Cryst Commun	10.1107/s1744309105019391	2005
Metabolism	Role of pectinolytic enzymes identified in Clostridium thermocellum cellulosome.	Chakraborty S, Fernandes VO, Dias FM, Prates JA, Ferreira LM, Fontes CM, Goyal A, Centeno MS.	PLoS One	10.1371/journal.pone.0116787	2015
	Draft Genome Sequences of Xanthomonas sacchari and Two Banana-Associated Xanthomonads Reveal Insights into the Xanthomonas Group 1 Clade.	Studholme DJ, Wasukira A, Paszkiewicz K, Aritua V, Thwaites R, Smith J, Grant M.	Genes (Basel)	10.3390/genes2041050	2011
Metabolism	Analysis of outer membrane vesicle associated proteins isolated from the plant pathogenic bacterium Xanthomonas campestris pv. campestris.	Sidhu VK, Vorholter FJ, Niehaus K, Watt SA.	BMC Microbiol	10.1186/1471-2180-8-87	2008
Enzymology	Cloning, purification, crystallization and preliminary X-ray crystallographic analysis of XC847, a 3'-5' oligoribonuclease from Xanthomonas campestris.	Wu YY, Chin KH, Chou CC, Lee CC, Shr HL, Gao FP, Lyu PC, Wang AH, Chou SH.	Acta Crystallogr Sect F Struct Biol Cryst Commun	10.1107/s1744309105027132	2005
Metabolism	Preparation, crystallization and preliminary X-ray analysis of XC2382, an ApaG protein of unknown structure from Xanthomonas campestris.	Chin KH, Chou CC, Lee CC, Shr HL, Lyu PC, Wang AH, Chou SH.	Acta Crystallogr Sect F Struct Biol Cryst Commun	10.1107/s1744309105018956	2005
Phylogeny	Phylogenomics and molecular signatures for species from the plant pathogen-containing order xanthomonadales.	Naushad HS, Gupta RS.	PLoS One	10.1371/journal.pone.0055216	2013
	Gene discovery by genome-wide CDS re-prediction and microarray-based transcriptional analysis in phytopathogen Xanthomonas campestris.	Zhou L, Vorholter FJ, He YQ, Jiang BL, Tang JL, Xu Y, Puhler A, He YW.	BMC Genomics	10.1186/1471-2164-12-359	2011
Metabolism	A pathogen type III effector with a novel E3 ubiquitin ligase architecture.	Singer AU, Schulze S, Skarina T, Xu X, Cui H, Eschen-Lippold L, Egler M, Srikumar T, Raught B, Lee J, Scheel D, Savchenko A, Bonas U.	PLoS Pathog	10.1371/journal.ppat.1003121	2013
Enzymology	Expression, crystallization and preliminary crystallographic studies of a novel bifunctional N-acetylglutamate synthase/kinase from Xanthomonas campestris homologous to vertebrate N-acetylglutamate synthase.	Shi D, Caldovic L, Jin Z, Yu X, Qu Q, Roth L, Morizono H, Hathout Y, Allewell NM, Tuchman M.	Acta Crystallogr Sect F Struct Biol Cryst Commun	10.1107/s1744309106044101	2006
Genetics	Comparative genomics of a cannabis pathogen reveals insight into the evolution of pathogenicity in Xanthomonas.	Jacobs JM, Pesce C, Lefeuvre P, Koebnik R.	Front Plant Sci	10.3389/fpls.2015.00431	2015
Enzymology	Development of an engineered bioluminescent reporter phage for detection of bacterial blight of crucifers.	Schofield DA, Bull CT, Rubio I, Wechter WP, Westwater C, Molineux IJ.	Appl Environ Microbiol	10.1128/aem.00252-12	2012
Enzymology	Improvement of the thermostability and activity of a pectate lyase by single amino acid substitutions, using a strategy based on melting-temperature-guided sequence alignment.	Xiao Z, Bergeron H, Grosse S, Beauchemin M, Garron ML, Shaya D, Sulea T, Cygler M, Lau PC.	Appl Environ Microbiol	10.1128/aem.02220-07	2008
	Resolving the phylogenetic and taxonomic relationship of Xanthomonas and Stenotrophomonas strains using complete rpoB gene sequence.	Sharma V, Patil PB.	PLoS Curr	10.1371/currents.rrn1239	2011
Biotechnology	Discovery and Biotechnological Exploitation of Glycoside-Phosphorylases.	Li A, Benkoulouche M, Ladeveze S, Durand J, Cioci G, Laville E, Potocki-Veronese G.	Int J Mol Sci	10.3390/ijms23063043	2022
Metabolism	Dual Role of the C-Terminal Domain in Osmosensing by Bacterial Osmolyte Transporter ProP.	Culham DE, Marom D, Boutin R, Garner J, Ozturk TN, Sahtout N, Tempelhagen L, Lamoureux G, Wood JM.	Biophys J	10.1016/j.bpj.2018.10.023	2018
	hpaR, a putative marR family transcriptional regulator, is positively controlled by HrpG and HrpX and involved in the pathogenesis, hypersensitive response, and extracellular protease production of Xanthomonas campestris pathovar campestris.	Wei K, Tang DJ, He YQ, Feng JX, Jiang BL, Lu GT, Chen B, Tang JL.	J Bacteriol	10.1128/jb.01331-06	2007
Genetics	DIGA--a database of improved gene annotation for phytopathogens.	Gao N, Chen LL, Ji HF, Wang W, Chang JW, Gao B, Zhang L, Zhang SC, Zhang HY.	BMC Genomics	10.1186/1471-2164-11-54	2010
Metabolism	Insights into the extracytoplasmic stress response of Xanthomonas campestris pv. campestris: role and regulation of {sigma}E-dependent activity.	Bordes P, Lavatine L, Phok K, Barriot R, Boulanger A, Castanie-Cornet MP, Dejean G, Lauber E, Becker A, Arlat M, Gutierrez C.	J Bacteriol	10.1128/jb.00884-10	2011
Genetics	Genome-Wide Screening for Novel Candidate Virulence Related Response Regulator Genes in Xanthomonas oryzae pv. oryzicola.	Zhang ZC, Zhao M, Xu LD, Niu XN, Qin HP, Li YM, Li ML, Jiang ZW, Yang X, Huang GH, Jiang W, Tang JL, He YQ.	Front Microbiol	10.3389/fmicb.2018.01789	2018
	Positive selection of the Hrp pilin HrpE of the plant pathogen Xanthomonas.	Weber E, Koebnik R.	J Bacteriol	10.1128/jb.188.4.1405-1410.2006	2006
Metabolism	XopC and XopJ, two novel type III effector proteins from Xanthomonas campestris pv. vesicatoria.	Noel L, Thieme F, Gabler J, Buttner D, Bonas U.	J Bacteriol	10.1128/jb.185.24.7092-7102.2003	2003
	The complete genome sequence of Xanthomonas albilineans provides new insights into the reductive genome evolution of the xylem-limited Xanthomonadaceae.	Pieretti I, Royer M, Barbe V, Carrere S, Koebnik R, Cociancich S, Couloux A, Darrasse A, Gouzy J, Jacques MA, Lauber E, Manceau C, Mangenot S, Poussier S, Segurens B, Szurek B, Verdier V, Arlat M, Rott P.	BMC Genomics	10.1186/1471-2164-10-616	2009
Pathogenicity	Interactions of seedborne bacterial pathogens with host and non-host plants in relation to seed infestation and seedling transmission.	Dutta B, Gitaitis R, Smith S, Langston D.	PLoS One	10.1371/journal.pone.0099215	2014
	The molecular basis of FimT-mediated DNA uptake during bacterial natural transformation.	Braus SAG, Short FL, Holz S, Stedman MJM, Gossert AD, Hospenthal MK.	Nat Commun	10.1038/s41467-022-28690-1	2022
Metabolism	Detection and functional characterization of a 215 amino acid N-terminal extension in the Xanthomonas type III effector XopD.	Canonne J, Marino D, Noel LD, Arechaga I, Pichereaux C, Rossignol M, Roby D, Rivas S.	PLoS One	10.1371/journal.pone.0015773	2010
Metabolism	Xanthomonas campestris pv. campestris possesses a single gluconeogenic pathway that is required for virulence.	Tang DJ, He YQ, Feng JX, He BR, Jiang BL, Lu GT, Chen B, Tang JL.	J Bacteriol	10.1128/jb.187.17.6231-6237.2005	2005
Metabolism	Genome-wide transcriptome analysis of the plant pathogen Xanthomonas identifies sRNAs with putative virulence functions.	Schmidtke C, Findeiss S, Sharma CM, Kuhfuss J, Hoffmann S, Vogel J, Stadler PF, Bonas U.	Nucleic Acids Res	10.1093/nar/gkr904	2012
	Differential biofilm formation and motility associated with lipopolysaccharide/exopolysaccharide-coupled biosynthetic genes in Stenotrophomonas maltophilia.	Huang TP, Somers EB, Wong AC.	J Bacteriol	10.1128/jb.188.8.3116-3120.2006	2006
Metabolism	Identification and characterization of RibN, a novel family of riboflavin transporters from Rhizobium leguminosarum and other proteobacteria.	Garcia Angulo VA, Bonomi HR, Posadas DM, Serer MI, Torres AG, Zorreguieta A, Goldbaum FA.	J Bacteriol	10.1128/jb.00644-13	2013
Genetics	Genomics of plant-associated microbes.	van Baarlen P, Siezen RJ.	Microb Biotechnol	10.1111/j.1751-7915.2009.00127.x	2009
	Iron is a signal for Stenotrophomonas maltophilia biofilm formation, oxidative stress response, OMPs expression, and virulence.	Garcia CA, Alcaraz ES, Franco MA, Passerini de Rossi BN.	Front Microbiol	10.3389/fmicb.2015.00926	2015
Metabolism	An F-type lectin domain directs the activity of Streptosporangium roseum alpha-l-fucosidase.	Bishnoi R, Mahajan S, Ramya TNC.	Glycobiology	10.1093/glycob/cwy079	2018
Enzymology	Twisting of the DNA-binding surface by a beta-strand-bearing proline modulates DNA gyrase activity.	Hsieh TJ, Yen TJ, Lin TS, Chang HT, Huang SY, Hsu CH, Farh L, Chan NL.	Nucleic Acids Res	10.1093/nar/gkq153	2010
Enzymology	Combination of chromogenic differential medium and estA-specific PCR for isolation and detection of phytopathogenic Xanthomonas spp.	Lee YA, Sung AN, Liu TF, Lee YS.	Appl Environ Microbiol	10.1128/aem.01653-09	2009
	Assessing the quality of whole genome alignments in bacteria.	Swidan F, Shamir R.	Adv Bioinformatics	10.1155/2009/749027	2009
	P2CS: a two-component system resource for prokaryotic signal transduction research.	Barakat M, Ortet P, Jourlin-Castelli C, Ansaldi M, Mejean V, Whitworth DE.	BMC Genomics	10.1186/1471-2164-10-315	2009
Metabolism	Dissection of exopolysaccharide biosynthesis in Kozakia baliensis.	Brandt JU, Jakob F, Behr J, Geissler AJ, Vogel RF.	Microb Cell Fact	10.1186/s12934-016-0572-x	2016
Pathogenicity	Xanthomonas citri subsp. citri and Xanthomonas arboricola pv. pruni: Comparative analysis of two pathogens producing similar symptoms in different host plants.	Garita-Cambronero J, Sena-Velez M, Ferragud E, Sabuquillo P, Redondo C, Cubero J.	PLoS One	10.1371/journal.pone.0219797	2019
Metabolism	Genomics of aerobic cellulose utilization systems in actinobacteria.	Anderson I, Abt B, Lykidis A, Klenk HP, Kyrpides N, Ivanova N.	PLoS One	10.1371/journal.pone.0039331	2012
	A TALE of transposition: Tn3-like transposons play a major role in the spread of pathogenicity determinants of Xanthomonas citri and other xanthomonads.	Ferreira RM, de Oliveira AC, Moreira LM, Belasque J, Gourbeyre E, Siguier P, Ferro MI, Ferro JA, Chandler M, Varani AM.	mBio	10.1128/mbio.02505-14	2015
Genetics	Genomic and systems evolution in Vibrionaceae species.	Gu J, Neary J, Cai H, Moshfeghian A, Rodriguez SA, Lilburn TG, Wang Y.	BMC Genomics	10.1186/1471-2164-10-s1-s11	2009
	Genomic survey of pathogenicity determinants and VNTR markers in the cassava bacterial pathogen Xanthomonas axonopodis pv. Manihotis strain CIO151.	Arrieta-Ortiz ML, Rodriguez-R LM, Perez-Quintero A, Poulin L, Diaz AC, Arias Rojas N, Trujillo C, Restrepo Benavides M, Bart R, Boch J, Boureau T, Darrasse A, David P, Duge de Bernonville T, Fontanilla P, Gagnevin L, Guerin F, Jacques MA, Lauber E, Lefeuvre P, Medina C, Medina E, Montenegro N, Munoz Bodnar A, Noel LD, Ortiz Quinones JF, Osorio D, Pardo C, Patil PB, Poussier S, Pruvost O, Robene-Soustrade I, Ryan RP, Tabima J, Urrego Morales OG, Verniere C, Carrere S, Verdier V, Szurek B, Restrepo S, Lopez C, Koebnik R, Bernal A.	PLoS One	10.1371/journal.pone.0079704	2013
Metabolism	A novel metal transporter mediating manganese export (MntX) regulates the Mn to Fe intracellular ratio and Neisseria meningitidis virulence.	Veyrier FJ, Boneca IG, Cellier MF, Taha MK.	PLoS Pathog	10.1371/journal.ppat.1002261	2011
Transcriptome	Insights into genome plasticity and pathogenicity of the plant pathogenic bacterium Xanthomonas campestris pv. vesicatoria revealed by the complete genome sequence.	Thieme F, Koebnik R, Bekel T, Berger C, Boch J, Buttner D, Caldana C, Gaigalat L, Goesmann A, Kay S, Kirchner O, Lanz C, Linke B, McHardy AC, Meyer F, Mittenhuber G, Nies DH, Niesbach-Klosgen U, Patschkowski T, Ruckert C, Rupp O, Schneiker S, Schuster SC, Vorholter FJ, Weber E, Puhler A, Bonas U, Bartels D, Kaiser O.	J Bacteriol	10.1128/jb.187.21.7254-7266.2005	2005
Genetics	Genome-wide gene order distances support clustering the gram-positive bacteria.	House CH, Pellegrini M, Fitz-Gibbon ST.	Front Microbiol	10.3389/fmicb.2014.00785	2014
	Transcriptional regulatory network discovery via multiple method integration: application to e. coli K12.	Sun J, Tuncay K, Haidar AA, Ensman L, Stanley F, Trelinski M, Ortoleva P.	Algorithms Mol Biol	10.1186/1748-7188-2-2	2007
Metabolism	Proteins encoded by Sphingomonas elodea ATCC 31461 rmlA and ugpG genes, involved in gellan gum biosynthesis, exhibit both dTDP- and UDP-glucose pyrophosphorylase activities.	Silva E, Marques AR, Fialho AM, Granja AT, Sa-Correia I.	Appl Environ Microbiol	10.1128/aem.71.8.4703-4712.2005	2005
Metabolism	Burkholderia contaminans Biofilm Regulating Operon and Its Distribution in Bacterial Genomes.	Voronina OL, Kunda MS, Ryzhova NN, Aksenova EI, Semenov AN, Romanova YM, Gintsburg AL.	Biomed Res Int	10.1155/2016/6560534	2016
	Novel virulence gene of Pseudomonas syringae pv. tomato strain DC3000.	Preiter K, Brooks DM, Penaloza-Vazquez A, Sreedharan A, Bender CL, Kunkel BN.	J Bacteriol	10.1128/jb.187.22.7805-7814.2005	2005
Genetics	Mining the genomes of plant pathogenic bacteria: how not to drown in gigabases of sequence.	Vinatzer BA, Yan S.	Mol Plant Pathol	10.1111/j.1364-3703.2007.00438.x	2008
	The type III-dependent Hrp pilus is required for productive interaction of Xanthomonas campestris pv. vesicatoria with pepper host plants.	Weber E, Ojanen-Reuhs T, Huguet E, Hause G, Romantschuk M, Korhonen TK, Bonas U, Koebnik R.	J Bacteriol	10.1128/jb.187.7.2458-2468.2005	2005
	Comparative Genomic and Phenotypic Characterization of Pathogenic and Non-Pathogenic Strains of Xanthomonas arboricola Reveals Insights into the Infection Process of Bacterial Spot Disease of Stone Fruits.	Garita-Cambronero J, Palacio-Bielsa A, Lopez MM, Cubero J.	PLoS One	10.1371/journal.pone.0161977	2016
	The role of horizontal transfer in the evolution of a highly variable lipopolysaccharide biosynthesis locus in xanthomonads that infect rice, citrus and crucifers.	Patil PB, Bogdanove AJ, Sonti RV.	BMC Evol Biol	10.1186/1471-2148-7-243	2007
Metabolism	Functional screening of metagenome and genome libraries for detection of novel flavonoid-modifying enzymes.	Rabausch U, Juergensen J, Ilmberger N, Bohnke S, Fischer S, Schubach B, Schulte M, Streit WR.	Appl Environ Microbiol	10.1128/aem.01077-13	2013
Phylogeny	Classification of plant associated bacteria using RIF, a computationally derived DNA marker.	Schneider KL, Marrero G, Alvarez AM, Presting GG.	PLoS One	10.1371/journal.pone.0018496	2011
	Reduced genetic variation occurs among genes of the highly clonal plant pathogen Xanthomonas axonopodis pv. vesicatoria, including the effector gene avrBs2.	Wichmann G, Ritchie D, Kousik CS, Bergelson J.	Appl Environ Microbiol	10.1128/aem.71.5.2418-2432.2005	2005
	Microarray-based detection and typing of the Rhizobium nodulation gene nodC: potential of DNA arrays to diagnose biological functions of interest.	Bontemps C, Golfier G, Gris-Liebe C, Carrere S, Talini L, Boivin-Masson C.	Appl Environ Microbiol	10.1128/aem.71.12.8042-8048.2005	2005
Metabolism	Acetylornithine transcarbamylase: a novel enzyme in arginine biosynthesis.	Morizono H, Cabrera-Luque J, Shi D, Gallegos R, Yamaguchi S, Yu X, Allewell NM, Malamy MH, Tuchman M.	J Bacteriol	10.1128/jb.188.8.2974-2982.2006	2006
	An SOS-regulated operon involved in damage-inducible mutagenesis in Caulobacter crescentus.	Galhardo RS, Rocha RP, Marques MV, Menck CF.	Nucleic Acids Res	10.1093/nar/gki551	2005
	PrhG, a transcriptional regulator responding to growth conditions, is involved in the control of the type III secretion system regulon in Ralstonia solanacearum.	Plener L, Manfredi P, Valls M, Genin S.	J Bacteriol	10.1128/jb.01189-09	2010
	Specific genomic fingerprints of phytopathogenic Xanthomonas and Pseudomonas pathovars and strains generated with repetitive sequences and PCR.	Louws FJ, Fulbright DW, Stephens CT, de Bruijn FJ.	Appl Environ Microbiol	10.1128/aem.60.7.2286-2295.1994	1994
Metabolism	Comparative genomic analysis reveals a novel mitochondrial isoform of human rTS protein and unusual phylogenetic distribution of the rTS gene.	Liang P, Nair JR, Song L, McGuire JJ, Dolnick BJ.	BMC Genomics	10.1186/1471-2164-6-125	2005
Phylogeny	The power of phylogenetic approaches to detect horizontally transferred genes.	Poptsova MS, Gogarten JP.	BMC Evol Biol	10.1186/1471-2148-7-45	2007
Metabolism	AmpDI is involved in expression of the chromosomal L1 and L2 beta-lactamases of Stenotrophomonas maltophilia.	Yang TC, Huang YW, Hu RM, Huang SC, Lin YT.	Antimicrob Agents Chemother	10.1128/aac.01513-08	2009
Metabolism	Characterization of MtfA, a novel regulatory output signal protein of the glucose-phosphotransferase system in Escherichia coli K-12.	Gohler AK, Staab A, Gabor E, Homann K, Klang E, Kosfeld A, Muus JE, Wulftange JS, Jahreis K.	J Bacteriol	10.1128/jb.06387-11	2012
Metabolism	Crystal structure of the chromophore binding domain of an unusual bacteriophytochrome, RpBphP3, reveals residues that modulate photoconversion.	Yang X, Stojkovic EA, Kuk J, Moffat K.	Proc Natl Acad Sci U S A	10.1073/pnas.0701737104	2007
	From the Academy: Colloquium review. Unique characteristics of Xanthomonas oryzae pv. oryzae AvrXa21 and implications for plant innate immunity.	Lee SW, Han SW, Bartley LE, Ronald PC.	Proc Natl Acad Sci U S A	10.1073/pnas.0605508103	2006
Metabolism	pigB determines a diffusible factor needed for extracellular polysaccharide slime and xanthomonadin production in Xanthomonas campestris pv. campestris.	Poplawsky AR, Chun W.	J Bacteriol	10.1128/jb.179.2.439-444.1997	1997
	In search of RNase P RNA from microbial genomes.	Li Y, Altman S.	RNA	10.1261/rna.7970404	2004
Enzymology	Evolutionary diversification and characterization of the eubacterial gene family encoding DXR type II, an alternative isoprenoid biosynthetic enzyme.	Carretero-Paulet L, Lipska A, Perez-Gil J, Sangari FJ, Albert VA, Rodriguez-Concepcion M.	BMC Evol Biol	10.1186/1471-2148-13-180	2013
Metabolism	Simple sequence repeats in prokaryotic genomes.	Mrazek J, Guo X, Shah A.	Proc Natl Acad Sci U S A	10.1073/pnas.0702412104	2007
	The dif/Xer recombination systems in proteobacteria.	Carnoy C, Roten CA.	PLoS One	10.1371/journal.pone.0006531	2009
Metabolism	In vivo immobilization of fusion proteins on bioplastics by the novel tag BioF.	Moldes C, Garcia P, Garcia JL, Prieto MA.	Appl Environ Microbiol	10.1128/aem.70.6.3205-3212.2004	2004
Phylogeny	Phylogenetic signal and functional categories in Proteobacteria genomes.	Comas I, Moya A, Gonzalez-Candelas F.	BMC Evol Biol	10.1186/1471-2148-7-s1-s7	2007
	The hrp genes of Pseudomonas cichorii are essential for pathogenicity on eggplant but not on lettuce.	Hojo H, Koyanagi M, Tanaka M, Kajihara S, Ohnishi K, Kiba A, Hikichi Y.	Microbiology (Reading)	10.1099/mic.0.2008/021097-0	2008
Metabolism	The noncanonical type III secretion system of Xanthomonas translucens pv. graminis is essential for forage grass infection.	Wichmann F, Vorholter FJ, Hersemann L, Widmer F, Blom J, Niehaus K, Reinhard S, Conradin C, Kolliker R.	Mol Plant Pathol	10.1111/mpp.12030	2013
	Use of suppression-subtractive hybridization to identify genes in the Burkholderia cepacia complex that are unique to Burkholderia cenocepacia.	Bernier SP, Sokol PA.	J Bacteriol	10.1128/jb.187.15.5278-5291.2005	2005
Metabolism	In planta gene expression analysis of Xanthomonas oryzae pathovar oryzae, African strain MAI1.	Soto-Suarez M, Bernal D, Gonzalez C, Szurek B, Guyot R, Tohme J, Verdier V.	BMC Microbiol	10.1186/1471-2180-10-170	2010
Metabolism	Insights into secondary metabolism from a global analysis of prokaryotic biosynthetic gene clusters.	Cimermancic P, Medema MH, Claesen J, Kurita K, Wieland Brown LC, Mavrommatis K, Pati A, Godfrey PA, Koehrsen M, Clardy J, Birren BW, Takano E, Sali A, Linington RG, Fischbach MA.	Cell	10.1016/j.cell.2014.06.034	2014
Metabolism	Cytoplasmic N-glycosyltransferase of Actinobacillus pleuropneumoniae is an inverting enzyme and recognizes the NX(S/T) consensus sequence.	Schwarz F, Fan YY, Schubert M, Aebi M.	J Biol Chem	10.1074/jbc.m111.277160	2011
	Genetic characterization of the Bifidobacterium breve UCC 2003 hrcA locus.	Ventura M, Canchaya C, Bernini V, Del Casale A, Dellaglio F, Neviani E, Fitzgerald GF, van Sinderen D.	Appl Environ Microbiol	10.1128/aem.71.12.8998-9007.2005	2005
Metabolism	GEM System: automatic prototyping of cell-wide metabolic pathway models from genomes.	Arakawa K, Yamada Y, Shinoda K, Nakayama Y, Tomita M.	BMC Bioinformatics	10.1186/1471-2105-7-168	2006
Metabolism	The Xanthomonas oryzae pv. oryzae PhoPQ two-component system is required for AvrXA21 activity, hrpG expression, and virulence.	Lee SW, Jeong KS, Han SW, Lee SE, Phee BK, Hahn TR, Ronald P.	J Bacteriol	10.1128/jb.01406-07	2008
	A database of bacterial lipoproteins (DOLOP) with functional assignments to predicted lipoproteins.	Babu MM, Priya ML, Selvan AT, Madera M, Gough J, Aravind L, Sankaran K.	J Bacteriol	10.1128/jb.188.8.2761-2773.2006	2006
Metabolism	Polyhydroxyalkanoate (PHA) accumulation in sulfate-reducing bacteria and identification of a class III PHA synthase (PhaEC) in Desulfococcus multivorans.	Hai T, Lange D, Rabus R, Steinbuchel A.	Appl Environ Microbiol	10.1128/aem.70.8.4440-4448.2004	2004
Metabolism	Novel alpha-L-Fucosidases from a Soil Metagenome for Production of Fucosylated Human Milk Oligosaccharides.	Lezyk M, Jers C, Kjaerulff L, Gotfredsen CH, Mikkelsen MD, Mikkelsen JD.	PLoS One	10.1371/journal.pone.0147438	2016
	Structural insights into mechanism and specificity of O-GlcNAc transferase.	Clarke AJ, Hurtado-Guerrero R, Pathak S, Schuttelkopf AW, Borodkin V, Shepherd SM, Ibrahim AF, van Aalten DM.	EMBO J	10.1038/emboj.2008.186	2008
	A component of the Xanthomonadaceae type IV secretion system combines a VirB7 motif with a N0 domain found in outer membrane transport proteins.	Souza DP, Andrade MO, Alvarez-Martinez CE, Arantes GM, Farah CS, Salinas RK.	PLoS Pathog	10.1371/journal.ppat.1002031	2011
Genetics	Correction of sequence-dependent ambiguous bases (Ns) from the 454 pyrosequencing system.	Shin S, Park J.	Nucleic Acids Res	10.1093/nar/gku070	2014
Metabolism	Identification of mdoD, an mdoG paralog which encodes a twin-arginine-dependent periplasmic protein that controls osmoregulated periplasmic glucan backbone structures.	Lequette Y, Odberg-Ferragut C, Bohin JP, Lacroix JM.	J Bacteriol	10.1128/jb.186.12.3695-3702.2004	2004
Genetics	Peptide-based functional annotation of carbohydrate-active enzymes by conserved unique peptide patterns (CUPP).	Barrett K, Lange L.	Biotechnol Biofuels	10.1186/s13068-019-1436-5	2019
	Pea Broth Enhances the Biocontrol Efficacy of Lysobacter capsici AZ78 by Triggering Cell Motility Associated with Biogenesis of Type IV Pilus.	Tomada S, Puopolo G, Perazzolli M, Musetti R, Loi N, Pertot I.	Front Microbiol	10.3389/fmicb.2016.01136	2016
	Analysis of the dermatophyte Trichophyton rubrum expressed sequence tags.	Wang L, Ma L, Leng W, Liu T, Yu L, Yang J, Yang L, Zhang W, Zhang Q, Dong J, Xue Y, Zhu Y, Xu X, Wan Z, Ding G, Yu F, Tu K, Li Y, Li R, Shen Y, Jin Q.	BMC Genomics	10.1186/1471-2164-7-255	2006
Metabolism	Structural basis for conductance through TRIC cation channels.	Su M, Gao F, Yuan Q, Mao Y, Li DL, Guo Y, Yang C, Wang XH, Bruni R, Kloss B, Zhao H, Zeng Y, Zhang FB, Marks AR, Hendrickson WA, Chen YH.	Nat Commun	10.1038/ncomms15103	2017
Phylogeny	Reconstructing genome trees of prokaryotes using overlapping genes.	Cheng CH, Yang CH, Chiu HT, Lu CL.	BMC Bioinformatics	10.1186/1471-2105-11-102	2010
	Analysis of gene order data supports vertical inheritance of the leukotoxin operon and genome rearrangements in the 5' flanking region in genus Mannheimia.	Larsen J, Kuhnert P, Frey J, Christensen H, Bisgaard M, Olsen JE.	BMC Evol Biol	10.1186/1471-2148-7-184	2007
	Comparison of ATPase-encoding type III secretion system hrcN genes in biocontrol fluorescent Pseudomonads and in phytopathogenic proteobacteria.	Rezzonico F, Defago G, Moenne-Loccoz Y.	Appl Environ Microbiol	10.1128/aem.70.9.5119-5131.2004	2004
Enzymology	Purification, characterization, and sequencing of an extracellular cold-active aminopeptidase produced by marine psychrophile Colwellia psychrerythraea strain 34H.	Huston AL, Methe B, Deming JW.	Appl Environ Microbiol	10.1128/aem.70.6.3321-3328.2004	2004
Phylogeny	Differentiation of Xylella fastidiosa strains via multilocus sequence analysis of environmentally mediated genes (MLSA-E).	Parker JK, Havird JC, De La Fuente L.	Appl Environ Microbiol	10.1128/aem.06679-11	2012
Genetics	Divergence and redundancy of 16S rRNA sequences in genomes with multiple rrn operons.	Acinas SG, Marcelino LA, Klepac-Ceraj V, Polz MF, Polz MF.	J Bacteriol	10.1128/jb.186.9.2629-2635.2004	2004
Metabolism	Prokaryote phylogeny based on ribosomal proteins and aminoacyl tRNA synthetases by using the compositional distance approach.	Wei H, Qi J, Hao B.	Sci China C Life Sci	10.1360/03yc0137	2004
Genetics	Comparative genomics of gene-family size in closely related bacteria.	Pushker R, Mira A, Rodriguez-Valera F.	Genome Biol	10.1186/gb-2004-5-4-r27	2004
Enzymology	Molecular cloning and characterization of Bifidobacterium bifidum 1,2-alpha-L-fucosidase (AfcA), a novel inverting glycosidase (glycoside hydrolase family 95).	Katayama T, Sakuma A, Kimura T, Makimura Y, Hiratake J, Sakata K, Yamanoi T, Kumagai H, Yamamoto K.	J Bacteriol	10.1128/jb.186.15.4885-4893.2004	2004
	Type three effector gene distribution and sequence analysis provide new insights into the pathogenicity of plant-pathogenic Xanthomonas arboricola.	Hajri A, Pothier JF, Fischer-Le Saux M, Bonneau S, Poussier S, Boureau T, Duffy B, Manceau C.	Appl Environ Microbiol	10.1128/aem.06119-11	2012
Metabolism	Virulence factor regulator (Vfr) controls virulence-associated phenotypes in Pseudomonas syringae pv. tabaci 6605 by a quorum sensing-independent mechanism.	Taguchi F, Ichinose Y.	Mol Plant Pathol	10.1111/mpp.12003	2013
Phylogeny	Distribution and phylogenetic analysis of family 19 chitinases in Actinobacteria.	Kawase T, Saito A, Sato T, Kanai R, Fujii T, Nikaidou N, Miyashita K, Watanabe T.	Appl Environ Microbiol	10.1128/aem.70.2.1135-1144.2004	2004
Genetics	Operon prediction for sequenced bacterial genomes without experimental information.	Bergman NH, Passalacqua KD, Hanna PC, Qin ZS.	Appl Environ Microbiol	10.1128/aem.01686-06	2007
Metabolism	Co-evolution of tRNA 3' trailer sequences with 3' processing enzymes in bacteria.	Li Z, Gong X, Joshi VH, Li M.	RNA	10.1261/rna.7287505	2005
Metabolism	Elucidation of the regulon and cis-acting regulatory element of HrpB, the AraC-type regulator of a plant pathogen-like type III secretion system in Burkholderia pseudomallei.	Lipscomb L, Schell MA.	J Bacteriol	10.1128/jb.01379-10	2011
Enzymology	Evolutionary and experimental assessment of novel markers for detection of Xanthomonas euvesicatoria in plant samples.	Albuquerque P, Caridade CM, Rodrigues AS, Marcal AR, Cruz J, Cruz L, Santos CL, Mendes MV, Tavares F.	PLoS One	10.1371/journal.pone.0037836	2012
Metabolism	Role of the FeoB protein and siderophore in promoting virulence of Xanthomonas oryzae pv. oryzae on rice.	Pandey A, Sonti RV.	J Bacteriol	10.1128/jb.01558-09	2010
Pathogenicity	Functional gene diversity of soil microbial communities from five oil-contaminated fields in China.	Liang Y, Van Nostrand JD, Deng Y, He Z, Wu L, Zhang X, Li G, Zhou J.	ISME J	10.1038/ismej.2010.142	2011
Genetics	Genome sequence of the versatile fish pathogen Edwardsiella tarda provides insights into its adaptation to broad host ranges and intracellular niches.	Wang Q, Yang M, Xiao J, Wu H, Wang X, Lv Y, Xu L, Zheng H, Wang S, Zhao G, Liu Q, Zhang Y.	PLoS One	10.1371/journal.pone.0007646	2009
Metabolism	Identification of residues required for stalled-ribosome rescue in the codon-independent release factor YaeJ.	Kogure H, Handa Y, Nagata M, Kanai N, Guntert P, Kubota K, Nameki N.	Nucleic Acids Res	10.1093/nar/gkt1280	2014
	Abundant Intergenic TAACTGA Direct Repeats and Putative Alternate RNA Polymerase beta' Subunits in Marine Beggiatoaceae Genomes: Possible Regulatory Roles and Origins.	MacGregor BJ.	Front Microbiol	10.3389/fmicb.2015.01397	2015
Genetics	Prediction of functional modules based on comparative genome analysis and Gene Ontology application.	Wu H, Su Z, Mao F, Olman V, Xu Y.	Nucleic Acids Res	10.1093/nar/gki573	2005
Metabolism	Functional insights from the distribution and role of homopeptide repeat-containing proteins.	Faux NG, Bottomley SP, Lesk AM, Irving JA, Morrison JR, de la Banda MG, Whisstock JC.	Genome Res	10.1101/gr.3096505	2005
Metabolism	GamR, the LysR-Type Galactose Metabolism Regulator, Regulates hrp Gene Expression via Transcriptional Activation of Two Key hrp Regulators, HrpG and HrpX, in Xanthomonas oryzae pv. oryzae.	Rashid MM, Ikawa Y, Tsuge S.	Appl Environ Microbiol	10.1128/aem.00513-16	2016
	Evolution of ribonuclease H genes in prokaryotes to avoid inheritance of redundant genes.	Kochiwa H, Tomita M, Kanai A.	BMC Evol Biol	10.1186/1471-2148-7-128	2007
	A computational approach for identifying pathogenicity islands in prokaryotic genomes.	Yoon SH, Hur CG, Kang HY, Kim YH, Oh TK, Kim JF.	BMC Bioinformatics	10.1186/1471-2105-6-184	2005
Enzymology	Prokaryotic homologs of the eukaryotic 3-hydroxyanthranilate 3,4-dioxygenase and 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase in the 2-nitrobenzoate degradation pathway of Pseudomonas fluorescens strain KU-7.	Muraki T, Taki M, Hasegawa Y, Iwaki H, Lau PC.	Appl Environ Microbiol	10.1128/aem.69.3.1564-1572.2003	2003
Pathogenicity	Vesiculation from Pseudomonas aeruginosa under SOS.	Maredia R, Devineni N, Lentz P, Dallo SF, Yu J, Guentzel N, Chambers J, Arulanandam B, Haskins WE, Weitao T.	ScientificWorldJournal	10.1100/2012/402919	2012
Genetics	A genomic survey of Reb homologs suggests widespread occurrence of R-bodies in proteobacteria.	Raymann K, Bobay LM, Doak TG, Lynch M, Gribaldo S.	G3 (Bethesda)	10.1534/g3.112.005231	2013
Genetics	Phylogenetic distribution and evolutionary history of bacterial DEAD-Box proteins.	Lopez-Ramirez V, Alcaraz LD, Moreno-Hagelsieb G, Olmedo-Alvarez G.	J Mol Evol	10.1007/s00239-011-9441-8	2011
	A study in entire chromosomes of violations of the intra-strand parity of complementary nucleotides (Chargaff's second parity rule).	Powdel BR, Satapathy SS, Kumar A, Jha PK, Buragohain AK, Borah M, Ray SK.	DNA Res	10.1093/dnares/dsp021	2009
Metabolism	Integrase-directed recovery of functional genes from genomic libraries.	Rowe-Magnus DA.	Nucleic Acids Res	10.1093/nar/gkp561	2009
	Short and long-term genome stability analysis of prokaryotic genomes.	Brilli M, Lio P, Lacroix V, Sagot MF.	BMC Genomics	10.1186/1471-2164-14-309	2013
	Annotation of Protein Domains Reveals Remarkable Conservation in the Functional Make up of Proteomes Across Superkingdoms.	Nasir A, Naeem A, Khan MJ, Nicora HD, Caetano-Anolles G.	Genes (Basel)	10.3390/genes2040869	2011
Metabolism	Multiple mechanisms contribute to lateral transfer of an organophosphate degradation (opd) island in Sphingobium fuliginis ATCC 27551.	Pandeeti EV, Longkumer T, Chakka D, Muthyala VR, Parthasarathy S, Madugundu AK, Ghanta S, Medipally SR, Pantula SC, Yekkala H, Siddavattam D.	G3 (Bethesda)	10.1534/g3.112.004051	2012
Metabolism	Pseudomonas syringae Catalases Are Collectively Required for Plant Pathogenesis.	Guo M, Block A, Bryan CD, Becker DF, Alfano JR.	J Bacteriol	10.1128/jb.00999-12	2012
Metabolism	Purine utilization by Klebsiella oxytoca M5al: genes for ring-oxidizing and -opening enzymes.	Pope SD, Chen LL, Stewart V.	J Bacteriol	10.1128/jb.01281-08	2009
Metabolism	A genomic timescale of prokaryote evolution: insights into the origin of methanogenesis, phototrophy, and the colonization of land.	Battistuzzi FU, Feijao A, Hedges SB.	BMC Evol Biol	10.1186/1471-2148-4-44	2004
Phylogeny	Comparative genomic analyses of the bacterial phosphotransferase system.	Barabote RD, Saier MH.	Microbiol Mol Biol Rev	10.1128/mmbr.69.4.608-634.2005	2005
Enzymology	Double-stranded DNA bacteriophage prohead protease is homologous to herpesvirus protease.	Cheng H, Shen N, Pei J, Grishin NV.	Protein Sci	10.1110/ps.04726004	2004
Phylogeny	A system to automatically classify and name any individual genome-sequenced organism independently of current biological classification and nomenclature.	Marakeby H, Badr E, Torkey H, Song Y, Leman S, Monteil CL, Heath LS, Vinatzer BA.	PLoS One	10.1371/journal.pone.0089142	2014
Metabolism	Single-residue changes in the C-terminal disulfide-bonded loop of the Pseudomonas aeruginosa type IV pilin influence pilus assembly and twitching motility.	Harvey H, Habash M, Aidoo F, Burrows LL.	J Bacteriol	10.1128/jb.00943-09	2009
Metabolism	Involvement of two latex-clearing proteins during rubber degradation and insights into the subsequent degradation pathway revealed by the genome sequence of Gordonia polyisoprenivorans strain VH2.	Hiessl S, Schuldes J, Thurmer A, Halbsguth T, Broker D, Angelov A, Liebl W, Daniel R, Steinbuchel A.	Appl Environ Microbiol	10.1128/aem.07969-11	2012
Metabolism	Homologue structure of the SLAC1 anion channel for closing stomata in leaves.	Chen YH, Hu L, Punta M, Bruni R, Hillerich B, Kloss B, Rost B, Love J, Siegelbaum SA, Hendrickson WA.	Nature	10.1038/nature09487	2010
Phylogeny	Proteome-wide functional classification and identification of prokaryotic transmembrane proteins by transmembrane topology similarity comparison.	Arai M, Okumura K, Satake M, Shimizu T.	Protein Sci	10.1110/ps.04814404	2004
	Diversity in domain architectures of Ser/Thr kinases and their homologues in prokaryotes.	Krupa A, Srinivasan N.	BMC Genomics	10.1186/1471-2164-6-129	2005
Genetics	Comparative genomic analysis of the pPT23A plasmid family of Pseudomonas syringae.	Zhao Y, Ma Z, Sundin GW.	J Bacteriol	10.1128/jb.187.6.2113-2126.2005	2005
	A complete set of flagellar genes acquired by horizontal transfer coexists with the endogenous flagellar system in Rhodobacter sphaeroides.	Poggio S, Abreu-Goodger C, Fabela S, Osorio A, Dreyfus G, Vinuesa P, Camarena L.	J Bacteriol	10.1128/jb.01681-06	2007
Metabolism	Flagellin glycosylation island in Pseudomonas syringae pv. glycinea and its role in host specificity.	Takeuchi K, Taguchi F, Inagaki Y, Toyoda K, Shiraishi T, Ichinose Y.	J Bacteriol	10.1128/jb.185.22.6658-6665.2003	2003
	The temperate marine phage PhiHAP-1 of Halomonas aquamarina possesses a linear plasmid-like prophage genome.	Mobberley JM, Authement RN, Segall AM, Paul JH.	J Virol	10.1128/jvi.00140-08	2008
Metabolism	Helicobacter pylori FlgR is an enhancer-independent activator of sigma54-RNA polymerase holoenzyme.	Brahmachary P, Dashti MG, Olson JW, Hoover TR.	J Bacteriol	10.1128/jb.186.14.4535-4542.2004	2004
	Bioinformatic characterization of the trimeric intracellular cation-specific channel protein family.	Silverio AL, Saier MH.	J Membr Biol	10.1007/s00232-011-9364-8	2011
Enzymology	The TyrA family of aromatic-pathway dehydrogenases in phylogenetic context.	Song J, Bonner CA, Wolinsky M, Jensen RA.	BMC Biol	10.1186/1741-7007-3-13	2005
Metabolism	Identification and characterization of genes required for biosynthesis and transport of the siderophore vibrioferrin in Vibrio parahaemolyticus.	Tanabe T, Funahashi T, Nakao H, Miyoshi S, Shinoda S, Yamamoto S.	J Bacteriol	10.1128/jb.185.23.6938-6949.2003	2003
Transcriptome	Complete genome sequence of the N2-fixing broad host range endophyte Klebsiella pneumoniae 342 and virulence predictions verified in mice.	Fouts DE, Tyler HL, DeBoy RT, Daugherty S, Ren Q, Badger JH, Durkin AS, Huot H, Shrivastava S, Kothari S, Dodson RJ, Mohamoud Y, Khouri H, Roesch LF, Krogfelt KA, Struve C, Triplett EW, Methe BA.	PLoS Genet	10.1371/journal.pgen.1000141	2008
Genetics	Fine-structured multi-scaling long-range correlations in completely sequenced genomes--features, origin, and classification.	Knoch TA, Goker M, Lohner R, Abuseiris A, Grosveld FG.	Eur Biophys J	10.1007/s00249-009-0489-y	2009
Pathogenicity	Monitoring impact of a pesticide treatment on bacterial soil communities by metabolic and genetic fingerprinting in addition to conventional testing procedures.	Engelen B, Meinken K, von Wintzingerode F, Heuer H, Malkomes HP, Backhaus H.	Appl Environ Microbiol	10.1128/aem.64.8.2814-2821.1998	1998
	The TetR family of transcriptional repressors.	Ramos JL, Martinez-Bueno M, Molina-Henares AJ, Teran W, Watanabe K, Zhang X, Gallegos MT, Brennan R, Tobes R.	Microbiol Mol Biol Rev	10.1128/mmbr.69.2.326-356.2005	2005
Metabolism	Bioinformatic evaluation of L-arginine catabolic pathways in 24 cyanobacteria and transcriptional analysis of genes encoding enzymes of L-arginine catabolism in the cyanobacterium Synechocystis sp. PCC 6803.	Schriek S, Ruckert C, Staiger D, Pistorius EK, Michel KP.	BMC Genomics	10.1186/1471-2164-8-437	2007
Phylogeny	Myxobacterial Predation: A Standardised Lawn Predation Assay Highlights Strains with Unusually Efficient Predatory Activity.	Zwarycz AS, Whitworth DE.	Microorganisms	10.3390/microorganisms11020398	2023
Enzymology	Predatory Strategies of Myxococcus xanthus: Prey Susceptibility to OMVs and Moonlighting Enzymes.	Zwarycz AS, Page T, Nikolova G, Radford EJ, Whitworth DE.	Microorganisms	10.3390/microorganisms11040874	2023
Enzymology	Multiplex real-time PCR for the detection of Clavibacter michiganensis subsp. michiganensis, Pseudomonas syringae pv. tomato and pathogenic Xanthomonas species on tomato plants.	Penazova E, Dvorak M, Ragasova L, Kiss T, Pecenka J, Cechova J, Eichmeier A.	PLoS One	10.1371/journal.pone.0227559	2020
	Characterization of Xanthomonas campestris Pathovars by rRNA Gene Restriction Patterns.	Berthier Y, Verdier V, Guesdon JL, Chevrier D, Denis JB, Decoux G, Lemattre M.	Appl Environ Microbiol	10.1128/aem.59.3.851-859.1993	1993
Pathogenicity	A "repertoire for repertoire" hypothesis: repertoires of type three effectors are candidate determinants of host specificity in Xanthomonas.	Hajri A, Brin C, Hunault G, Lardeux F, Lemaire C, Manceau C, Boureau T, Poussier S.	PLoS One	10.1371/journal.pone.0006632	2009
	First Report of Black Rot Disease in Eruca vesicaria subsp. sativa Caused by Xanthomonas campestris pv. campestris in Belgium	Holtappels D, De Paepe B, van Malderghem C, Baeyen S, Venneman J, Wagemans J, Van Vaerenbergh J.	Plant Dis		2024
Metabolism	Xanthomonas campestris pv. vesicatoria Secretes Proteases and Xylanases via the Xps Type II Secretion System and Outer Membrane Vesicles.	Sole M, Scheibner F, Hoffmeister AK, Hartmann N, Hause G, Rother A, Jordan M, Lautier M, Arlat M, Buttner D.	J Bacteriol	10.1128/jb.00322-15	2015
	Protection of Arabidopsis thaliana against leaf-pathogenic Pseudomonas syringae by Sphingomonas strains in a controlled model system.	Innerebner G, Knief C, Vorholt JA.	Appl Environ Microbiol	10.1128/aem.00133-11	2011
	Validation and Application of a Real-time PCR Protocol for the Specific Detection and Quantification of Clavibacter michiganensis subsp. sepedonicus in Potato.	Cho MS, Park DH, Namgung M, Ahn TY, Park DS.	Plant Pathol J	10.5423/ppj.oa.02.2015.0019	2015
	Long-Term Warming Shifts the Composition of Bacterial Communities in the Phyllosphere of Galium album in a Permanent Grassland Field-Experiment.	Aydogan EL, Moser G, Muller C, Kampfer P, Glaeser SP.	Front Microbiol	10.3389/fmicb.2018.00144	2018
Genetics	Plant Microbiome and Its Link to Plant Health: Host Species, Organs and Pseudomonas syringae pv. actinidiae Infection Shaping Bacterial Phyllosphere Communities of Kiwifruit Plants.	Purahong W, Orru L, Donati I, Perpetuini G, Cellini A, Lamontanara A, Michelotti V, Tacconi G, Spinelli F.	Front Plant Sci	10.3389/fpls.2018.01563	2018
Phylogeny	Bipartite interactions, antibiotic production and biosynthetic potential of the Arabidopsis leaf microbiome.	Helfrich EJN, Vogel CM, Ueoka R, Schafer M, Ryffel F, Muller DB, Probst S, Kreuzer M, Piel J, Vorholt JA.	Nat Microbiol	10.1038/s41564-018-0200-0	2018
	Efficacy of Erwinia amylovora and Xanthomonas campestris pv campestris phages to control fire blight and black rot in vivo.	Vique G, Mendoza-Barbera E, Ramos-Barbero MD, Blanco-Picazo P, Sala-Comorera L, Quiros P, Atares S, Salaet I, Muniesa M, Rodriguez-Rubio L.	Microbiol Spectr	10.1128/spectrum.00280-25	2025
	Antibacterial and antifungal activities of natural deep eutectic solvents.	Bedair HM, Samir TM, Mansour FR.	Appl Microbiol Biotechnol	10.1007/s00253-024-13044-2	2024
	A study on the antioxidant and antimicrobial activities in the chloroformic and methanolic extracts of 6 important medicinal plants collected from North of Iran.	Hadadi Z, Nematzadeh GA, Ghahari S.	BMC Chem	10.1186/s13065-020-00683-5	2020
Enzymology	Aggressive Emerging Pathovars of Xanthomonas arboricola Represent Widespread Epidemic Clones Distinct from Poorly Pathogenic Strains, as Revealed by Multilocus Sequence Typing.	Fischer-Le Saux M, Bonneau S, Essakhi S, Manceau C, Jacques MA.	Appl Environ Microbiol	10.1128/aem.00050-15	2015
	Novel Virulent Bacteriophages Infecting Mediterranean Isolates of the Plant Pest Xylella fastidiosa and Xanthomonas albilineans.	Clavijo-Coppens F, Ginet N, Cesbron S, Briand M, Jacques MA, Ansaldi M.	Viruses	10.3390/v13050725	2021
	Novel Tetraplex Quantitative PCR Assays for Simultaneous Detection and Identification of Xylella fastidiosa Subspecies in Plant Tissues.	Dupas E, Briand M, Jacques MA, Cesbron S.	Front Plant Sci	10.3389/fpls.2019.01732	2019
Stress	Biofilm Producing Rhizobacteria With Multiple Plant Growth-Promoting Traits Promote Growth of Tomato Under Water-Deficit Stress.	Haque MM, Mosharaf MK, Khatun M, Haque MA, Biswas MS, Islam MS, Islam MM, Shozib HB, Miah MMU, Molla AH, Siddiquee MA	Front Microbiol	10.3389/fmicb.2020.542053	2020
Metabolism	Enhancement of 5-keto-d-gluconate production by a recombinant Gluconobacter oxydans using a dissolved oxygen control strategy.	Yuan J, Wu M, Lin J, Yang L	J Biosci Bioeng	10.1016/j.jbiosc.2015.12.006	2016
Genetics	Novel Phl-producing genotypes of finger millet rhizosphere associated pseudomonads and assessment of their functional and genetic diversity.	Sekar J, Prabavathy VR	FEMS Microbiol Ecol	10.1111/1574-6941.12354	2014
Phylogeny	Benzoic acid-degrading bacteria from the intestinal tract of Macrotermes michaelseni Sjostedt.	Kamanda Ngugi D, Khamis Tsanuo M, Iddi Boga H	J Basic Microbiol	10.1002/jobm.200610142	2007
Genetics	Identification of genomic islands in six plant pathogens.	Chen LL	Gene	10.1016/j.gene.2006.01.029	2006
Genetics	Constitutive expression of a chromosomal class A (BJM group 2) beta-lactamase in Xanthomonas campestris.	Weng SF, Lin JW, Chen CH, Chen YY, Tseng YH, Tseng YH	Antimicrob Agents Chemother	10.1128/AAC.48.1.209-215.2004	2004
	Black rot disease incited by Indian race 1 of Xanthomonas campestris pv. campestris in Brassica juncea L. cv. Pusa Bold in India.	Kesharwani AK, Singh D, Kulshreshtha A, Kashyap AS, Avasthi AS, Geat N	Plant Dis	10.1094/PDIS-04-22-0738-PDN	2022
Genetics	Comparative genomics of the black rot pathogen Xanthomonas campestris pv. campestris and non-pathogenic co-inhabitant Xanthomonas melonis from Trinidad reveal unique pathogenicity determinants and secretion system profiles.	Ramnarine SDBJ, Jayaraman J, Ramsubhag A	PeerJ	10.7717/peerj.12632	2022
Genetics	An Efficient Approach to Explore and Discriminate Anomalous Regions in Bacterial Genomes Based on Maximum Entropy.	Barros-Carvalho GA, Van Sluys MA, Lopes FM	J Comput Biol	10.1089/cmb.2017.0042	2017
	The Lysobacter capsici AZ78 Genome Has a Gene Pool Enabling it to Interact Successfully with Phytopathogenic Microorganisms and Environmental Factors.	Puopolo G, Tomada S, Sonego P, Moretto M, Engelen K, Perazzolli M, Pertot I	Front Microbiol	10.3389/fmicb.2016.00096	2016
Genetics	Investigation of a Quadruplex-Forming Repeat Sequence Highly Enriched in Xanthomonas and Nostoc sp.	Rehm C, Wurmthaler LA, Li Y, Frickey T, Hartig JS	PLoS One	10.1371/journal.pone.0144275	2015
	First Report of Xanthomonas campestris pv. raphani Causing Leaf Spot Disease of Brassica oleracea in Portugal.	Cruz J, Tenreiro R, Cruz L	Plant Dis	10.1094/PDIS-07-14-0780-PDN	2015
Enzymology	First thermostable endo-beta-1,4-glucanase from newly isolated Xanthomonas sp. EC102.	Woo MH, Chang YH, Lee HS, Pak PJ, Kim JS, Chung N	Protein J	10.1007/s10930-013-9535-9	2014
	First Report of Xanthomonas campestris pv. campestris as the Causal Agent of Black Rot on Oilseed Rape (Brassica napus) in Serbia.	Popovic T, Balaz J, Starovic M, Trkulja N, Ivanovic Z, Ignjatov M, Josic D	Plant Dis	10.1094/PDIS-05-12-0506-PDN	2013
	Amino ester hydrolase from Xanthomonas campestris pv. campestris, ATCC 33913 for enzymatic synthesis of ampicillin.	Blum JK, Bommarius AS	J Mol Catal B Enzym	10.1016/j.molcatb.2010.06.014	2010
Metabolism	Genome-scale mutagenesis and phenotypic characterization of two-component signal transduction systems in Xanthomonas campestris pv. campestris ATCC 33913.	Qian W, Han ZJ, Tao J, He C	Mol Plant Microbe Interact	10.1094/MPMI-21-8-1128	2008
Metabolism	The Type III secretion system of Xanthomonas fuscans subsp. fuscans is involved in the phyllosphere colonization process and in transmission to seeds of susceptible beans.	Darsonval A, Darrasse A, Meyer D, Demarty M, Durand K, Bureau C, Manceau C, Jacques MA	Appl Environ Microbiol	10.1128/AEM.02906-07	2008
Metabolism	Qualitative and comparative proteomic analysis of Xanthomonas campestris pv. campestris 17.	Chung WJ, Shu HY, Lu CY, Wu CY, Tseng YH, Tsai SF, Lin CH	Proteomics	10.1002/pmic.200600647	2007
Metabolism	Evolution of enzymatic activities in the enolase superfamily: L-fuconate dehydratase from Xanthomonas campestris.	Yew WS, Fedorov AA, Fedorov EV, Rakus JF, Pierce RW, Almo SC, Gerlt JA	Biochemistry	10.1021/bi061687o	2006
Genetics	Comparative and functional genomic analyses of the pathogenicity of phytopathogen Xanthomonas campestris pv. campestris.	Qian W, Jia Y, Ren SX, He YQ, Feng JX, Lu LF, Sun Q, Ying G, Tang DJ, Tang H, Wu W, Hao P, Wang L, Jiang BL, Zeng S, Gu WY, Lu G, Rong L, Tian Y, Yao Z, Fu G, Chen B, Fang R, Qiang B, Chen Z, Zhao GP, Tang JL, He C	Genome Res	10.1101/gr.3378705	2005
Enzymology	Characterisation of a secondary alcohol dehydrogenase from Xanthomonas campestris DSM 3586.	Salusjarvi T, Hvorslev N, Miasnikov AN	Appl Microbiol Biotechnol	10.1007/s00253-004-1775-3	2004
Phylogeny	Comparison of two Xanthomonas campestris pathovar campestris genomes revealed differences in their gene composition.	Vorholter FJ, Thias T, Meyer F, Bekel T, Kaiser O, Puhler A, Niehaus K	J Biotechnol	10.1016/j.jbiotec.2003.08.011	2003
Genetics	'Actinomyces provencensis' sp. nov., 'Corynebacterium bouchesdurhonense' sp. nov., 'Corynebacterium provencense' sp. nov. and 'Xanthomonas massiliensis' sp. nov., 4 new species isolated from fresh stools of obese French patients.	Ndongo S, Andrieu C, Fournier PE, Lagier JC, Raoult D.	New Microbes New Infect	10.1016/j.nmni.2017.01.013	2017
Metabolism	Metabolic and taxonomic insights into the Gram-negative natural rubber degrading bacterium Steroidobacter cummioxidans sp. nov., strain 35Y.	Sharma V, Siedenburg G, Birke J, Mobeen F, Jendrossek D, Prakash T.	PLoS One	10.1371/journal.pone.0197448	2018
	Lysobacter changpingensis sp. nov., a novel species of the genus Lysobacter isolated from a rhizosphere soil of strawberry in China.	Niu BY, Ren DJ, Zhang FB, Zhu HT, Wei HL, Ma MC, Gao M.	Folia Microbiol (Praha)	10.1007/s12223-023-01058-8	2023
Phylogeny	Streptomyces gramineus sp. nov., an antibiotic-producing actinobacterium isolated from bamboo (Sasa borealis) rhizosphere soil.	Lee HJ, Han SI, Whang KS	Int J Syst Evol Microbiol	10.1099/ijs.0.030163-0	2011
Phylogeny	Stenotrophomonas panacihumi sp. nov., isolated from soil of a ginseng field.	Yi H, Srinivasan S, Kim MK	J Microbiol	10.1007/s12275-010-0006-0	2010
Phylogeny	Aspromonas composti gen. nov., sp. nov., a novel member of the family Xanthomonadaceae.	Jin L, Kim KK, Im WT, Yang HC, Lee ST	Int J Syst Evol Microbiol	10.1099/ijs.0.64472-0	2007
Phylogeny	Pseudoxanthomonas koreensis sp. nov. and Pseudoxanthomonas daejeonensis sp. nov.	Yang DC, Im WT, Kim MK, Lee ST	Int J Syst Evol Microbiol	10.1099/ijs.0.63210-0	2005

References

#1411	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 3586
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#22958	G Trébaol, L Gardan, C Manceau, J L Tanguy, Y Tirilly, S Boury: Genomic and phenotypic characterization of Xanthomonas cynarae sp. nov., a new species that causes bacterial bract spot of artichoke (Cynara scolymus L.).. IJSEM 50: 1471 - 1478 2000 ( DOI 10.1099/00207713-50-4-1471 , PubMed 10939652 )
#38386	; Curators of the CIP;
#57820	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 47691
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68369	Automatically annotated from API 20NE .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#117116	Collection of Institut Pasteur ; Curators of the CIP; CIP 100069
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Xanthomonas campestris (DSM 3586, ATCC 33913, NCPPB 528)

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