Xanthomonas campestris (NCPPB 1935, LMG 787, ICPB XN103)

Name: Xanthomonas campestris (NCPPB 1935, LMG 787, ICPB XN103)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 162944

Type strain

Culture col. no. NCPPB 1935 LMG 787 ICPB XN103 ICMP 80 ICMP 309 3 more

NCBI tax ID(s) 339

Special Collections JCM

History IAM 12310 <-- R. J. Roberts; Cold Sprig Habor Lab., USA <-- ATCC 23390 ("Xanthomonas nigromaculans") <-- M. P. Starr <-- D. Dye; 2T2 <-- N. Okabe.

Links

Xanthomonas campestris JCM 20469 is a bacterium of the family Lysobacteraceae.

genome sequence Bacteria

Name and taxonomic classification

SI-ID 5724

LMG 787,ATCC 23390,ICMP 80,NCPPB 1935,PDDCC 80,IAM 12310,ICMP 309,JCM 20469,CFBP 8464

@ref 20215

Last LPSN update 2026-02-09 11:39:30

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Lysobacterales

Family Lysobacteraceae

Genus Xanthomonas

Species Xanthomonas campestris

Full scientific name Xanthomonas campestris (Pammel 1895) Dowson 1939 (Approved Lists 1980)

Synonyms (2)

"Bacillus campestris"
"Phytomonas campestris"

BacDive ID	Other strains from **Xanthomonas campestris** (70)	Type strain
17584	X. campestris P 25, DSM 3586, ATCC 33913, NCPPB 528, PDDCC ... (type strain)
17579	X. campestris B47, Q 18, DSM 1050, ICPB XC 135, NCPPB 1929, ...
17580	X. campestris 1, DSM 1526, ATCC 29497, DSM 60151
17581	X. campestris 3, DSM 2405, ATCC 29498, DSM 60153
17582	X. campestris 14, DSM 2406, ATCC 29499, DSM 60163
17583	X. campestris 32, DSM 2407, ATCC 29500, DSM 60181
17585	X. campestris DSM 19000, ATCC 13951, NRRL B-1459, JCM 20529, ...
17586	X. campestris DSM 50852, DSM 60159
17587	X. campestris DSM 50851, DSM 60128
17596	X. campestris DSM 3850, ATCC 11672, NCPPB 571, JCM 20466, ...
100641	X. campestris STI09699(IMET), RNSH203, A167, IMET 9702, ...
100642	X. campestris STI09592(IMET), IMET 7307, IMET 9592, IMET ...
100643	X. campestris STI07313(IMET), N374,
100644	X. campestris STI09701(IMET), A130, IMET 9701
100645	X. campestris STI09702(IMET), RNSH203, A167, IMET 9702, ...
100646	X. campestris STI09697(IMET), A246, NCPF 1066, IMET 9697
100647	X. campestris STI09694(IMET), A115, IMET 9694
100648	X. campestris STI09695(IMET), A171, IMET 9695, RV 27823, ...
137146	X. campestris 596.3, CIP 74.23, CNPB 1121, CFPB 1121
149967	X. campestris CCUG 38768, NCPPB 1926, LMG 7303
149968	X. campestris CCUG 38769, NCPPB 2985, LMG 7314
157534	X. campestris IMI 349486
157535	X. campestris IMI 371797
157536	X. campestris IMI 375299
157537	X. campestris IMI 377425
157538	X. campestris IMI 377746
157539	X. campestris IMI 379428
157540	X. campestris IMI 379774
157541	X. campestris IMI 386925
157542	X. campestris IMI 349464
157543	X. campestris IMI 349483
157544	X. campestris IMI 349476
157545	X. campestris IMI 349474
157546	X. campestris IMI 349465
157547	X. campestris IMI 349478
157548	X. campestris IMI 349431
157549	X. campestris IMI 349458
157550	X. campestris IMI 349456
157551	X. campestris IMI 349468
157552	X. campestris IMI 349479
157553	X. campestris IMI 349482
157554	X. campestris IMI 349488
157555	X. campestris IMI 349467
157556	X. campestris IMI 349480
157557	X. campestris IMI 349452
157558	X. campestris IMI 349471
157559	X. campestris IMI 349485
157560	X. campestris IMI 349451
157561	X. campestris IMI 349477
157562	X. campestris IMI 349473
157563	X. campestris IMI 349435
157564	X. campestris IMI 350186
157565	X. campestris IMI 349445
157566	X. campestris IMI 349475
157567	X. campestris IMI 347319
157568	X. campestris IMI 350191
157569	X. campestris IMI 349461
157570	X. campestris IMI 349462
157571	X. campestris IMI 349444
157572	X. campestris IMI 350172
157573	X. campestris IMI 350251
157574	X. campestris IMI 349447
157575	X. campestris IMI 349448
157576	X. campestris IMI 349487
157577	X. campestris IMI 349459
157578	X. campestris IMI 349466
157579	X. campestris IMI 349443
157580	X. campestris IMI 349460
157581	X. campestris IMI 349469
157582	X. campestris IMI 349457

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	98.8
125438	negative	98.494

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	25

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.5

Spore formation

@ref	Spore formation	Confidence
125439		96.6

Isolation, sampling and environmental information

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	NCPPB1935 assembly for Xanthomonas campestris pv. nigromaculans NCPPB 1935	complete	GCA_938743425	487879.6	487879	74.8
66792	ASM2078372v1 assembly for Xanthomonas campestris pv. nigromaculans NCPPB 1935	contig	GCA_020783725	487879.3	487879

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Xanthomonas campestris pv. nigromaculans NCPPB 1935
NCBI: GCA_938743425

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	96.60	no
125439	motility	BacteriaNetⓘ	yes	84.10	no
125439	gram_stain	BacteriaNetⓘ	negative	98.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Xanthomonas campestris pv. nigromaculans NCPPB 1935
NCBI: GCA_938743425.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	aerobic	aerobicⓘ	yes	85.37	no
125438	gram-positive	gram-positiveⓘ	no	98.49	no
125438	anaerobic	anaerobicⓘ	no	97.74	no
125438	spore-forming	spore-formingⓘ	no	88.35	no
125438	thermophilic	thermophileⓘ	no	100.00	yes
125438	flagellated	motile2+ⓘ	yes	68.21	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft genome sequences for ten strains of Xanthomonas species that have phylogenomic importance.	Harrison J, Hussain RMF, Greer SF, Ntoukakis V, Aspin A, Vicente JG, Grant M, Studholme DJ.	Access Microbiol	10.1099/acmi.0.000532.v3	2023

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Xanthomonas campestris (NCPPB 1935, LMG 787, ICPB XN103)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_938743425

Genome-based predictions

Predictions

Literature

Literature

References

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