Name: Xanthomonas campestris JCM 20469
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 162944

Type strain:

Species: Xanthomonas campestris

Culture col. no.: JCM 20469, ATCC 23390, IAM 12310, ICMP 309, ICMP 80, ICPB XN103, LMG 787, NCPPB 1935

Strain history: IAM 12310 <-- R. J. Roberts; Cold Sprig Habor Lab., USA <-- ATCC 23390 ("Xanthomonas nigromaculans") <-- M. P. Starr <-- D. Dye; 2T2 <-- N. Okabe.

NCBI tax ID(s): 339 (species)

SI-ID 5724

LMG 787, ATCC 23390, ICMP 80, NCPPB 1935, PDDCC 80, IAM 12310, ICMP 309, JCM 20469

Other strains from Xanthomonas campestris

Section

Xanthomonas campestris JCM 20469 is a mesophilic, Gram-negative bacterium of the family Lysobacteraceae.

Gram-negative
mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Lysobacterales*
	Family	*Lysobacteraceae*
	Genus	*Xanthomonas*
	Species	**Xanthomonas campestris**
	Full Scientific Name (LPSN)	Xanthomonas campestris (Pammel 1895) Dowson 1939 (Approved Lists 1980)

	Synonym	"Phytomonas* campestris"*
	Synonym	"Bacillus* campestris"*

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.995

[Ref.: #69480]	Motility	yes Confidence in %97.905

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	25 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.999
[Ref.: #69481]	Ability of spore formation	no Confidence in %98

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Xanthomonas campestris pv. nigromaculans NCPPB 1935	GCA_020783725	contig	GenBank	487879 tax ID	*
[Ref.: #66792]	Xanthomonas campestris pv. nigromaculans NCPPB 1935	GCA_938743425	complete	GenBank	487879 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Xanthomonas campestris pv. nigromaculans NCPPB 1935 NCBI: GCA_020783725.1
[Ref.: #69481]	spore-forming	no	98	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Xanthomonas campestris pv. nigromaculans NCPPB 1935 NCBI: GCA_938743425.1
[Ref.: #69480]	aerobic	yes	95.044	no
[Ref.: #69480]	flagellated	no	84.795	no
[Ref.: #69480]	gram-positive	no	97.862	no
[Ref.: #69480]	anaerobic	no	99.236	no
[Ref.: #69480]	halophile	no	93.822	no
[Ref.: #69480]	spore-forming	no	95.119	no
[Ref.: #69480]	thermophile	no	99.478	yes
[Ref.: #69480]	glucose-util	yes	92.73	no
[Ref.: #69480]	motile	yes	81.226	no
[Ref.: #69480]	glucose-ferment	no	90.211	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 20469, ATCC 23390, IAM 12310, ICMP 309, ICMP 80, ICPB XN103, LMG 787, NCPPB 1935

[Ref.: #113723]

SI-ID 5724

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#113723

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID5724.1 )

* These data were automatically processed and therefore are not curated

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Xanthomonas campestris pv. nigromaculans NCPPB 1935

Xanthomonas campestris pv. nigromaculans NCPPB 1935

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