Name: Xanthomonas campestris DSM 3850
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17596

Type strain:

Species: Xanthomonas campestris

Culture col. no.: DSM 3850, ATCC 11672, NCPPB 571, JCM 20466, CIP 107796, IAM 12307, ICMP 571, ICPB XB103, LMG 546, Dye XB1

Strain history: CIP <- 2002, D. Mazel, Inst. Pasteur, Paris, France <- N.E.B., L. Raleigh <- ATCC <- M.P. Starr <- M. Patel 4

NCBI tax ID(s): 1407645 (species)

SI-ID 5225

LMG 546, ATCC 11672, ICMP 571, NCPPB 571, PDDCC 571, DSM 3850, IAM 12307, KACC 11117, JCM 20466, CIP 107796

Other strains from Xanthomonas campestris

Section

Xanthomonas campestris DSM 3850 is an obligate aerobe, mesophilic, Gram-negative bacterium that was isolated from Xanthium strumarium.

Gram-negative
motile
rod-shaped
mesophilic
obligate aerobe
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Lysobacterales*
	Family	*Lysobacteraceae*
	Genus	*Xanthomonas*
	Species	**Xanthomonas campestris**
	Full Scientific Name (LPSN)	Xanthomonas campestris (Pammel 1895) Dowson 1939 (Approved Lists 1980)

	Synonym	"Phytomonas* campestris"*
	Synonym	"Bacillus* campestris"*

Information on morphological and physiological properties Morphology

[Ref.: #117115]	Gram stain	negative

[Ref.: #117115]	Cell shape	rod-shaped

[Ref.: #117115]	Motility	yes

[Ref.: #117115]	Pigment production	no
[Ref.: #117115]	Pigment name	Pyocyanin

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1480]

Culture medium

REACTIVATION WITH LIQUID MEDIUM 54 (DSMZ Medium 54a)

[Ref.: #1480]

Culture medium growth

[Ref.: #1480]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1480]

Culture medium composition

expand / minimize

[Ref.: #1480]

Culture medium

REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)

[Ref.: #1480]

Culture medium growth

[Ref.: #1480]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1480]

Culture medium composition

expand / minimize

[Ref.: #36638]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #36638]

Culture medium growth

[Ref.: #36638]

Culture medium composition

expand / minimize

[Ref.: #117115]

Culture medium

CIP Medium 72

[Ref.: #117115]

Culture medium growth

[Ref.: #117115]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #1480]		growth	26 °C
[Ref.: #36638]		growth	30 °C
[Ref.: #67770]		growth	25 °C
[Ref.: #117115]		growth	25-30 °C
[Ref.: #117115]	no	growth	5 °C
[Ref.: #117115]	no	growth	37 °C
[Ref.: #117115]	no	growth	41 °C

[Ref.: #1480]	Temperature range	mesophilic
[Ref.: #36638]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #117115]	Temperature range	mesophilic
[Ref.: #117115]	Temperature range	psychrophilic
[Ref.: #117115]	Temperature range	mesophilic
[Ref.: #117115]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #117115]

Oxygen tolerance

obligate aerobe

[Ref.: #1480]

Name of produced compound

restriction endonuclease XbaI

	Salt	Tested relation		Salt conc.
[Ref.: #117115]	NaCl		growth	0	%
[Ref.: #117115]	NaCl	no	growth	2	%
[Ref.: #117115]	NaCl	no	growth	4	%
[Ref.: #117115]	NaCl	no	growth	6	%
[Ref.: #117115]	NaCl	no	growth	8	%
[Ref.: #117115]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #117115]	citrate ChEBI	-	carbon source
[Ref.: #117115]	esculin ChEBI	-	hydrolysis
[Ref.: #117115]	nitrate ChEBI	-	reduction
[Ref.: #117115]	nitrate ChEBI	-	respiration
[Ref.: #117115]	nitrite ChEBI	-	reduction

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #117115]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Metabolite production	Metabolite	Production
[Ref.: #117115]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #117115]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #117115]	amylase	-
[Ref.: #117115]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #117115]	caseinase	-	3.4.21.50
[Ref.: #117115]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #117115]	DNase	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #117115]	gelatinase	+
[Ref.: #117115]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #117115]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #117115]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #117115]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #117115]	oxidase	-
[Ref.: #117115]	protease	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #117115]	tryptophan deaminase	-
[Ref.: #117115]	tween esterase	+
[Ref.: #117115]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #117115]	2438	not determinedn.d.	+	+	+	+	+	-	+	+	-	+	+	-	+	-	-	+	+	-	+	+	-	-	-	-	+	-	-	-	-	-	-	+	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	+	-	-	-	+	-	-	-	-	-	+	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	+	-	+	-	+	+	+	-	-	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #117115]	10655	-	+	+	+	-	+	+	-	-	+	+	+	-	+	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1480]	Sample type/isolated from	Xanthium strumarium
[Ref.: #1480]	Host species	Xanthium strumarium

[Ref.: #67770]	Sample type/isolated from	Cocklebur (Xanthium strumarium)
[Ref.: #67770]	Host species	Xanthium strumarium
[Ref.: #67770]	Country	India
[Ref.: #67770]	Country ISO 3 Code	IND
[Ref.: #67770]	Continent	Asia

[Ref.: #117115]	Sample type/isolated from	Xanthium strumarium
[Ref.: #117115]	Country	India
[Ref.: #117115]	Country ISO 3 Code	IND
[Ref.: #117115]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host

#Plants

#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #117115]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Xanthomonas campestris pv. badrii strain NEB122	149696.4	complete	PATRIC	149696 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Xanthomonas campestris pv. badrii strain NEB122 PATRIC: 149696.4
[Ref.: #69480]	motile	yes	80.602	no
[Ref.: #69480]	gram-positive	no	98.052	no
[Ref.: #69480]	anaerobic	no	99.063	no
[Ref.: #69480]	aerobic	yes	94.454	no
[Ref.: #69480]	halophile	no	94.667	no
[Ref.: #69480]	spore-forming	no	95.482	no
[Ref.: #69480]	glucose-util	yes	94.786	no
[Ref.: #69480]	flagellated	no	85.305	no
[Ref.: #69480]	thermophile	no	99.023	no
[Ref.: #69480]	glucose-ferment	no	89.152	no

Availability in culture collections External links

[Ref.: #1480]

Culture collection no.

DSM 3850, ATCC 11672, NCPPB 571, JCM 20466, CIP 107796, IAM 12307, ICMP 571, ICPB XB103, LMG 546, Dye XB1

[Ref.: #86591]

SI-ID 5225

References

#1480

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 3850

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#36638 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#86591

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID5225.1 )

#117115 Collection of Institut Pasteur ; Curators of the CIP; CIP 107796
* These data were automatically processed and therefore are not curated

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Xanthomonas campestris pv. badrii strain NEB122

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