Xanthomonas campestris (DSM 3850, ATCC 11672, NCPPB 571)

Name: Xanthomonas campestris (DSM 3850, ATCC 11672, NCPPB 571)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17596

Type strain

Culture col. no. DSM 3850 ATCC 11672 NCPPB 571 LMG 546 ICPB XB103 5 more

NCBI tax ID(s) 339

Special Collections DSMZ JCM CIP

History <- ATCC <- M.P. Starr, XB103 (Xanthomonas badrii) <- M. Patel, 4 IAM 12307 <-- H. Takahashi <-- R. J. Roberts; Cold Sprig Habor Lab., USA <-- ATCC 11672 <-- M. P. Starr; XB 103 <-- M. Patel; 4. CIP <- 2002, D. Mazel, Inst. Pasteur, Paris, France <- N.E.B., L. Raleigh <- ATCC <- M.P. Starr <- M. Patel 4

Links

Xanthomonas campestris DSM 3850 is an obligate aerobe, Gram-negative, motile bacterium that was isolated from Xanthium strumarium.

Gram-negative motile rod-shaped obligate aerobe genome sequence Bacteria

Name and taxonomic classification

SI-ID 5225

LMG 546,ATCC 11672,ICMP 571,NCPPB 571,PDDCC 571,DSM 3850,IAM 12307,KACC 11117,JCM 20466,CIP 107796,CFBP 8440

@ref 20215

Last LPSN update 2026-02-09 11:22:16

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Lysobacterales

Family Lysobacteraceae

Genus Xanthomonas

Species Xanthomonas campestris

Full scientific name Xanthomonas campestris (Pammel 1895) Dowson 1939 (Approved Lists 1980)

Synonyms (2)

"Bacillus campestris"
"Phytomonas campestris"

BacDive ID	Other strains from **Xanthomonas campestris** (70)	Type strain
17584	X. campestris P 25, DSM 3586, ATCC 33913, NCPPB 528, PDDCC ... (type strain)
17579	X. campestris B47, Q 18, DSM 1050, ICPB XC 135, NCPPB 1929, ...
17580	X. campestris 1, DSM 1526, ATCC 29497, DSM 60151
17581	X. campestris 3, DSM 2405, ATCC 29498, DSM 60153
17582	X. campestris 14, DSM 2406, ATCC 29499, DSM 60163
17583	X. campestris 32, DSM 2407, ATCC 29500, DSM 60181
17585	X. campestris DSM 19000, ATCC 13951, NRRL B-1459, JCM 20529, ...
17586	X. campestris DSM 50852, DSM 60159
17587	X. campestris DSM 50851, DSM 60128
100641	X. campestris STI09699(IMET), RNSH203, A167, IMET 9702, ...
100642	X. campestris STI09592(IMET), IMET 7307, IMET 9592, IMET ...
100643	X. campestris STI07313(IMET), N374,
100644	X. campestris STI09701(IMET), A130, IMET 9701
100645	X. campestris STI09702(IMET), RNSH203, A167, IMET 9702, ...
100646	X. campestris STI09697(IMET), A246, NCPF 1066, IMET 9697
100647	X. campestris STI09694(IMET), A115, IMET 9694
100648	X. campestris STI09695(IMET), A171, IMET 9695, RV 27823, ...
137146	X. campestris 596.3, CIP 74.23, CNPB 1121, CFPB 1121
149967	X. campestris CCUG 38768, NCPPB 1926, LMG 7303
149968	X. campestris CCUG 38769, NCPPB 2985, LMG 7314
157534	X. campestris IMI 349486
157535	X. campestris IMI 371797
157536	X. campestris IMI 375299
157537	X. campestris IMI 377425
157538	X. campestris IMI 377746
157539	X. campestris IMI 379428
157540	X. campestris IMI 379774
157541	X. campestris IMI 386925
157542	X. campestris IMI 349464
157543	X. campestris IMI 349483
157544	X. campestris IMI 349476
157545	X. campestris IMI 349474
157546	X. campestris IMI 349465
157547	X. campestris IMI 349478
157548	X. campestris IMI 349431
157549	X. campestris IMI 349458
157550	X. campestris IMI 349456
157551	X. campestris IMI 349468
157552	X. campestris IMI 349479
157553	X. campestris IMI 349482
157554	X. campestris IMI 349488
157555	X. campestris IMI 349467
157556	X. campestris IMI 349480
157557	X. campestris IMI 349452
157558	X. campestris IMI 349471
157559	X. campestris IMI 349485
157560	X. campestris IMI 349451
157561	X. campestris IMI 349477
157562	X. campestris IMI 349473
157563	X. campestris IMI 349435
157564	X. campestris IMI 350186
157565	X. campestris IMI 349445
157566	X. campestris IMI 349475
157567	X. campestris IMI 347319
157568	X. campestris IMI 350191
157569	X. campestris IMI 349461
157570	X. campestris IMI 349462
157571	X. campestris IMI 349444
157572	X. campestris IMI 350172
157573	X. campestris IMI 350251
157574	X. campestris IMI 349447
157575	X. campestris IMI 349448
157576	X. campestris IMI 349487
157577	X. campestris IMI 349459
157578	X. campestris IMI 349466
157579	X. campestris IMI 349443
157580	X. campestris IMI 349460
157581	X. campestris IMI 349469
157582	X. campestris IMI 349457
162944	X. campestris JCM 20469, ATCC 23390, IAM 12310, ICMP 309, ...

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
125438	negative		98.5
125439	negative		98.6
117115	negative	rod-shaped

Pigmentation

@ref	Production	Name
117115		Pyocyanin

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
1480	REACTIVATION WITH LIQUID MEDIUM 54 (DSMZ Medium 54a)	Medium recipe at MediaDive	Name: REACTIVATION WITH LIQUID MEDIUM 54 (DSMZ Medium 54a) Composition: Glucose 20.0 g/l CaCO3 20.0 g/l Agar 17.0 g/l (optional) Yeast extract 10.0 g/l Distilled water
1480	REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)	Medium recipe at MediaDive	Name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
36638	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
117115	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
1480	positive	growth	26
36638	positive	growth	30
67770	positive	growth	25
117115	positive	growth	25-30
117115	negative	growth	5
117115	negative	growth	37
117115	negative	growth	41

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
117115	obligate aerobe
125439	obligate aerobe	99.5

Spore formation

@ref	Spore formation	Confidence
125438		91.366
125439		94.4

Compound production

1480

Compoundrestriction endonuclease XbaI

Halophily

@ref	Salt	Growth	Tested relation	Concentration
117115	NaCl	positive	growth	0 %
117115	NaCl		growth	2 %
117115	NaCl		growth	4 %
117115	NaCl		growth	6 %
117115	NaCl		growth	8 %
117115	NaCl		growth	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
117115	16947 ChEBI	citrate	-	carbon source
117115	4853 ChEBI	esculin	-	hydrolysis
117115	17632 ChEBI	nitrate	-	reduction
117115	17632 ChEBI	nitrate	-	respiration
117115	16301 ChEBI	nitrite	-	reduction

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
117115	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
117115	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
117115	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	+	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
117115	amylase	-
68382	beta-galactosidase	+	3.2.1.23	from API zym
117115	beta-galactosidase	+	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
117115	caseinase	-	3.4.21.50
117115	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
117115	DNase	-
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
117115	gelatinase	+
117115	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
117115	lipase	-
68382	lipase (C 14)	-		from API zym
117115	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
117115	ornithine decarboxylase	-	4.1.1.17
117115	oxidase	-
117115	protease	-
68382	trypsin	-	3.4.21.4	from API zym
117115	tryptophan deaminase	-
117115	tween esterase	+
117115	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
117115	-	+	+	+	-	+	+	-	-	+	+	+	-	+	-	-	-	-	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
117115	not determinedn.d.	+	+	+	+	+	-	+	+	-	+	+	-	+	-	-	+	+	-	+	+	-	-	-	-	+	-	-	-	-	-	-	+	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	+	-	-	-	+	-	-	-	-	-	+	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	+	-	+	-	+	+	+	-	-	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)

Isolation

@ref	Sample type	Host species	Country	Country ISO 3 Code	Continent
1480	Xanthium strumarium	Xanthium strumarium
67770	Cocklebur (Xanthium strumarium)	Xanthium strumarium	India	IND	Asia
117115	Xanthium strumarium		India	IND	Asia

Interaction and safety

Risk assessment

@ref	Pathogenicity plant	Biosafety level	Biosafety level comment
117115		1	Risk group (French classification) According to TRBA 466
1480		1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM1284817v1 assembly for Xanthomonas campestris pv. badrii NEB122	complete	GCA_012848175	149696.4	2907933099	149696	96.58

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Xanthomonas campestris pv. badrii strain NEB122
PATRIC: 149696.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	94.40	no
125439	motility	BacteriaNetⓘ	yes	83.10	no
125439	gram_stain	BacteriaNetⓘ	negative	98.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Xanthomonas campestris pv. badrii strain NEB122
PATRIC: 149696.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.50	no
125438	anaerobic	anaerobicⓘ	no	97.72	yes
125438	spore-forming	spore-formingⓘ	no	91.37	no
125438	aerobic	aerobicⓘ	yes	85.21	yes
125438	thermophilic	thermophileⓘ	no	99.48	yes
125438	flagellated	motile2+ⓘ	yes	69.13	no

Literature

Title	Authors	Journal	DOI	Year
A CRISPR/LbCas12a-based method for detection of bacterial fruit blotch pathogens in watermelon.	Wang Z, Cheng W, Dong Z, Yao X, Deng X, Ou C.	Microbiol Spectr	10.1128/spectrum.03846-23	2024
N4-methylcytosine as a minor base in bacterial DNA.	Ehrlich M, Wilson GG, Kuo KC, Gehrke CW.	J Bacteriol	10.1128/jb.169.3.939-943.1987	1987
Bacillus velezensis RC116 Inhibits the Pathogens of Bacterial Wilt and Fusarium Wilt in Tomato with Multiple Biocontrol Traits.	Dong H, Gao R, Dong Y, Yao Q, Zhu H.	Int J Mol Sci	10.3390/ijms24108527	2023
The Predatory Myxobacterium Citreicoccus inhibens gen. nov. sp. nov. Showed Antifungal Activity and Bacteriolytic Property against Phytopathogens.	Zhou Y, Yi S, Zang Y, Yao Q, Zhu H.	Microorganisms	10.3390/microorganisms9102137	2021

References

#1480	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 3850
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#36638	; Curators of the CIP;
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#117115	Collection of Institut Pasteur ; Curators of the CIP; CIP 107796
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Xanthomonas campestris (DSM 3850, ATCC 11672, NCPPB 571)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Compound production

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Enzymes

API zym

API biotype100

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_012848175

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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