Tsukamurella pulmonis (DSM 44142, CCUG 35732, JCM 10111)

Name: Tsukamurella pulmonis (DSM 44142, CCUG 35732, JCM 10111)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17100

Type strain

Culture col. no. DSM 44142 CCUG 35732 JCM 10111 IMMIB D-1321 PCM 2578 5 more

NCBI tax ID(s) 47312

Special Collections DSMZ CCUG JCM KCTC CIP Wink compendium

History <- A. F. Yassin, IMMIB; IMMIB D-1321 DSM 44142 <-- A. F. Yassin IMMIB D-1321. CIP <- 1996, A.F. Yassin, Bonn Univ., Bonn, Germany: strain IMMIB D-1321

Links

Tsukamurella pulmonis DSM 44142 is an aerobe, Gram-positive, rod-shaped bacterium that was isolated from sputum of an 92 year old woman with lung tuberculosis.

Gram-positive rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 43761

NCTC 13230,ATCC 700081,DSM 44142,CCUG 35732,CIP 104791,JCM 10111,KCTC 9963

@ref 20215

Last LPSN update 2026-02-09 11:22:08

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Tsukamurellaceae

Genus Tsukamurella

Species Tsukamurella pulmonis

Full scientific name Tsukamurella pulmonis Yassin et al. 1996

Synonyms (1)

Tsukamurella spongiae

BacDive ID	Other strains from **Tsukamurella pulmonis** (9)	Type strain
134234	T. pulmonis K362, CCUG 58061, JCM 14882, DSM 44990, NRRL ...
149887	T. pulmonis CCUG 38614
149921	T. pulmonis CCUG 38678
150358	T. pulmonis CCUG 39721
151796	T. pulmonis CCUG 44913
152572	T. pulmonis CCUG 47079
153072	T. pulmonis CCUG 48420
153425	T. pulmonis CCUG 49545
154019	T. pulmonis CCUG 52011

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
125438			91
125438	positive		90.642
125439	positive		91.1
122050	positive	rod-shaped

Colony morphology

@ref	Colony color	Incubation period	Medium used
20005	Pastel yellow (1034)	10-14 days	ISP 2
20005	Pastel yellow (1034)	10-14 days	ISP 3
20005	Pastel yellow (1034)	10-14 days	ISP 4
20005	Pastel yellow (1034)	10-14 days	ISP 5
20005	Pastel yellow (1034)	10-14 days	ISP 6
20005	Pastel yellow (1034)	10-14 days	ISP 7
52945		2-3 days
122050

Multicellular morphology

@ref	Forms multicellular complex	Medium name
20005		ISP 2
20005		ISP 3
20005		ISP 4
20005		ISP 5
20005		ISP 6
20005		ISP 7

Multimedia

@ref:	11519
multimedia content:	DSM_44142.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_44142.jpg
caption:	Medium 535 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
11519	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)	Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
20005	ISP 2		Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes
20005	ISP 3		Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms:
20005	ISP 4		Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml
20005	ISP 5		Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes
20005	ISP 6		Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes
20005	ISP 7		Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes
42108	MEDIUM 29- Brain heart agar		Distilled water make up to (1000.000 ml);Brain heart infusion agar (52.000 g)
11519	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
122050	CIP Medium 29	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
11519	positive	growth	28
42108	positive	growth	30
52945	positive	growth	37
67770	positive	growth	28
122050	positive	growth	15-41
122050	negative	growth	10
122050	negative	growth	45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
52945	aerobe
122050	obligate aerobe
125438	aerobe	90.303
125439	obligate aerobe	96.2

Halophily

@ref	Salt	Growth	Tested relation	Concentration
20005	NaCl	positive	maximum	7.5 %
122050	NaCl	positive	growth	0-8 %
122050	NaCl		growth	10 %

Observation

67770

Observationquinones: MK-9, MK-10, MK-8

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68368	29016 ChEBI	arginine	+	hydrolysis	from API 20E
122050	16947 ChEBI	citrate	+	carbon source
68368	16947 ChEBI	citrate	-	assimilation	from API 20E
68379	17634 ChEBI	D-glucose	-	fermentation	from API Coryne
68379	16899 ChEBI	D-mannitol	-	fermentation	from API Coryne
68379	16988 ChEBI	D-ribose	-	fermentation	from API Coryne
68379	65327 ChEBI	D-xylose	-	fermentation	from API Coryne
68379	4853 ChEBI	esculin	+	hydrolysis	from API Coryne
122050	4853 ChEBI	esculin	+	hydrolysis
68379	5291 ChEBI	gelatin	-	hydrolysis	from API Coryne
68368	5291 ChEBI	gelatin	-	hydrolysis	from API 20E
68379	28087 ChEBI	glycogen	-	fermentation	from API Coryne
122050	606565 ChEBI	hippurate	-	hydrolysis
68379	17716 ChEBI	lactose	-	fermentation	from API Coryne
68368	25094 ChEBI	lysine	+	degradation	from API 20E
68379	17306 ChEBI	maltose	-	fermentation	from API Coryne
122050	17632 ChEBI	nitrate	-	reduction
122050	17632 ChEBI	nitrate	-	respiration
68379	17632 ChEBI	nitrate	-	reduction	from API Coryne
122050	16301 ChEBI	nitrite	-	reduction
68368	18257 ChEBI	ornithine	+	degradation	from API 20E
68379	17992 ChEBI	sucrose	-	fermentation	from API Coryne
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
68379	16199 ChEBI	urea	-	hydrolysis	from API Coryne
68368	16199 ChEBI	urea	+	hydrolysis	from API 20E

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
122050	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
122050	35581 ChEBI	indole
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test	Indole test
122050	15688 ChEBI	acetoin	-
68368	15688 ChEBI	acetoin	-			from API 20E
122050	17234 ChEBI	glucose		-
68368	35581 ChEBI	indole			-	from API 20E

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
122050	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68379	alkaline phosphatase	+	3.1.3.1	from API Coryne
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68379	alpha-glucosidase	+	3.2.1.20	from API Coryne
122050	amylase	-
68368	arginine dihydrolase	+	3.5.3.6	from API 20E
68382	beta-galactosidase	-	3.2.1.23	from API zym
122050	beta-galactosidase	+	3.2.1.23
68379	beta-galactosidase	-	3.2.1.23	from API Coryne
68368	beta-galactosidase	-	3.2.1.23	from API 20E
68382	beta-glucosidase	+	3.2.1.21	from API zym
68379	beta-glucosidase	+	3.2.1.21	from API Coryne
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68379	beta-glucuronidase	-	3.2.1.31	from API Coryne
122050	caseinase	-	3.4.21.50
122050	catalase	+	1.11.1.6
122050	DNase	+
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
122050	gamma-glutamyltransferase	-	2.3.2.2
122050	gelatinase	-
68379	gelatinase	-		from API Coryne
68368	gelatinase	-		from API 20E
122050	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
122050	lipase	-
122050	lysine decarboxylase	-	4.1.1.18
68368	lysine decarboxylase	+	4.1.1.18	from API 20E
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68379	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API Coryne
122050	ornithine decarboxylase	-	4.1.1.17
68368	ornithine decarboxylase	+	4.1.1.17	from API 20E
122050	oxidase	-
122050	phenylalanine ammonia-lyase	-	4.3.1.24
122050	protease	-
68379	pyrazinamidase	-	3.5.1.B15	from API Coryne
68379	pyrrolidonyl arylamidase	-	3.4.19.3	from API Coryne
122050	tryptophan deaminase	-
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
122050	tween esterase	+
122050	urease	+	3.5.1.5
68379	urease	-	3.5.1.5	from API Coryne
68368	urease	+	3.5.1.5	from API 20E

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
20005	-	+	+	+	-	-	+	-	-	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
20005	-	-	-	+	-	-	+	-	+	-	-	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
20005	not determinedn.d.	+	+	+	+	+	+	+	+	-	+	+	-	-	-	+	+	-	+	-
122050	-	+	+	+	-	+	-	-	-	-	+	-	-	-	-	+	+	-	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
122050	not determinedn.d.	+	+	+	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	+	-	+	-	-	-	-	+	-	+	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	+	-	-	-	-	-	+	+	-	-	-	-	+	-	-	-	-	-	-	+	+	-	+	-	+	+	+	-	-	-	-	+	-	+	-	+	-	+	+	+	+	+	-	+	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Infection	#Disease	#Tuberculosis
#Host	#Human	#Female
#Host Body-Site	#Oral cavity and airways	#Lung
#Host Body Product	#Fluids	#Sputum

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
11519	sputum of an 92 year old woman with lung tuberculosis	Munich, Gauting	Germany	DEU	Europe	48.0668	11.3537 48.0668/11.3537
52945	Human sputum,92-yr-old woman w/ lung tuberculosis
67770	Sputum of a 92-year-old woman who suffered from pulmonary tuberculosis
122050	Human, Sputum	Gauting	Germany	DEU	Europe

Taxonmaps

69479

Global distribution of 16S sequence X92981 (>99% sequence identity) for Tsukamurella from Microbeatlas

Aquatic Samples	2978
Soil Samples	3431
Animal Samples	5160
Plant Samples	790
Total Samples	12359

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
11519	2	Risk group (German classification) According to TRBA 466
20005	2	German classification According to TRBA 466
122050	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	IMG-taxon 2634166370 annotated assembly for Tsukamurella pulmonis DSM 44142	contig	GCA_900103175	47312.12	2634166370	47312	79.03
67770	52700_E01 assembly for Tsukamurella pulmonis NCTC13230	contig	GCA_900460155	47312.13	2835265895	47312	78.81
67770	ASM157516v1 assembly for Tsukamurella pulmonis CCUG 35732	contig	GCA_001575165	47312.10	2700989555	47312	67.64

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Tsukamurella pulmonis strain DSM 44142 note copy 1 16S-23S ribosomal RNA intergenic spacer, complete sequence	AF536514	442	47312
20218	Tsukamurella pulmonis strain DSM 44142 note copy 2 16S-23S ribosomal RNA intergenic spacer, complete sequence	AF536515	442	47312
20218	Tsukamurella pulmonis strain DSM 44142 note copy 3 16S-23S ribosomal RNA intergenic spacer, complete sequence	AF536516	442	47312
20218	Tsukamurella pulmonis strain DSM 44142 note copy 4 16S-23S ribosomal RNA intergenic spacer, complete sequence	AF536517	442	47312
11519	Tsukamurella pulmonis 16S rRNA gene, strain IMMIB D-1321T	X92981	1460	47312
124043	Tsukamurella pulmonis strain CCUG 35732 16S ribosomal RNA gene, partial sequence.	KX924524	1221	47312

GC content

@ref	GC-content (mol%)	Method
11519	70.4	sequence analysis
67770	70.4	genome sequence analysis
67770	69.8	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Tsukamurella pulmonis DSM 44142
NCBI: GCA_900103175

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	79.90	no
125439	motility	BacteriaNetⓘ	no	64.80	no
125439	gram_stain	BacteriaNetⓘ	positive	91.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Tsukamurella pulmonis strain CCUG 35732
PATRIC: 47312.10

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	90.64	no
125438	anaerobic	anaerobicⓘ	no	98.75	yes
125438	spore-forming	spore-formingⓘ	no	57.51	no
125438	aerobic	aerobicⓘ	yes	90.30	yes
125438	thermophilic	thermophileⓘ	no	97.00	no
125438	flagellated	motile2+ⓘ	no	91.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	The Genome Analysis of the Human Lung-Associated Streptomyces sp. TR1341 Revealed the Presence of Beneficial Genes for Opportunistic Colonization of Human Tissues.	Lara AC, Corretto E, Kotrbova L, Lorenc F, Petrickova K, Grabic R, Chronakova A.	Microorganisms	10.3390/microorganisms9081547	2021
Genetics	Genome-Based Taxonomic Classification of the Phylum Actinobacteria.	Nouioui I, Carro L, Garcia-Lopez M, Meier-Kolthoff JP, Woyke T, Kyrpides NC, Pukall R, Klenk HP, Goodfellow M, Goker M.	Front Microbiol	10.3389/fmicb.2018.02007	2018
Metabolism	Structural elucidation of Tsukamurella pulmonis neutral polysaccharide and its visualization in infected mouse tissues by specific monoclonal antibodies.	Saeed A, Pasciak M, Gorska S, Ceremuga I, Gamian E, Ziolkowski P, Drab M, Gamian A.	Sci Rep	10.1038/s41598-018-29864-y	2018
Metabolism	Response of Secondary Metabolism of Hypogean Actinobacterial Genera to Chemical and Biological Stimuli.	Covington BC, Spraggins JM, Ynigez-Gutierrez AE, Hylton ZB, Bachmann BO.	Appl Environ Microbiol	10.1128/aem.01125-18	2018
Genetics	GenoType NTM-DR Performance Evaluation for Identification of Mycobacterium avium Complex and Mycobacterium abscessus and Determination of Clarithromycin and Amikacin Resistance.	Huh HJ, Kim SY, Shim HJ, Kim DH, Yoo IY, Kang OK, Ki CS, Shin SY, Jhun BW, Shin SJ, Daley CL, Koh WJ, Lee NY.	J Clin Microbiol	10.1128/jcm.00516-19	2019
Metabolism	Structuring Microbial Metabolic Responses to Multiplexed Stimuli via Self-Organizing Metabolomics Maps.	Goodwin CR, Covington BC, Derewacz DK, McNees CR, Wikswo JP, McLean JA, Bachmann BO.	Chem Biol	10.1016/j.chembiol.2015.03.020	2015
Enzymology	Tsukamurella conjunctivitis: a novel clinical syndrome.	Woo PC, Ngan AH, Lau SK, Yuen KY.	J Clin Microbiol	10.1128/jcm.41.7.3368-3371.2003	2003
Phylogeny	[A case of catheter-related bacteremia of Tsukamurella pulmonis].	Shim HE, Sung H, Baek SM, Namgung S, Kim MN, Kim YG, Lee GH	Korean J Lab Med	10.3343/kjlm.2009.29.1.41	2009
Phylogeny	Tsukamurella strandjordae sp. nov., a proposed new species causing sepsis.	Kattar MM, Cookson BT, Carlson LD, Stiglich SK, Schwartz MA, Nguyen TT, Daza R, Wallis CK, Yarfitz SL, Coyle MB.	J Clin Microbiol	10.1128/jcm.39.4.1467-1476.2001	2001
Phylogeny	Tsukamurella hongkongensis sp. nov. and Tsukamurella sinensis sp. nov., isolated from patients with keratitis, catheter-related bacteraemia and conjunctivitis.	Teng JLL, Tang Y, Wong SSY, Ngan AHY, Huang Y, Tsang CC, Choi GKY, Lau SKP, Woo PCY	Int J Syst Evol Microbiol	10.1099/ijsem.0.000733	2015
Phylogeny	Tsukamurella tyrosinosolvens sp. nov.	Yassin AF, Rainey FA, Burghardt J, Brzezinka H, Schmitt S, Seifert P, Zimmermann O, Mauch H, Gierth D, Lux I, Schaal KP	Int J Syst Bacteriol	10.1099/00207713-47-3-607	1997
Phylogeny	Tsukamurella pulmonis sp. nov.	Yassin AF, Rainey FA, Brzezinka H, Burghardt J, Rifai M, Seifert P, Feldmann K, Schaal KP	Int J Syst Bacteriol	10.1099/00207713-46-2-429	1996

References

#11519	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44142
#20005	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#42108	; Curators of the CIP;
#52945	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 35732
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68368	Automatically annotated from API 20E .
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#122050	Collection of Institut Pasteur ; Curators of the CIP; CIP 104791
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Tsukamurella pulmonis (DSM 44142, CCUG 35732, JCM 10111)

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