Name: Tsukamurella pulmonis K362
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134234

Type strain:

Species: Tsukamurella pulmonis

Strain Designation: K362

Culture col. no.: CCUG 58061, JCM 14882, DSM 44990, NRRL B-24467, JCM 18308, IFM 10862

Strain history: DSM 44990 <-- P. J. McCarthy K362 <-- J. Olson.

NCBI tax ID(s): 47312 (species)

SI-ID 297472

DSM 44990, NRRL B-24467, JCM 14882, CCUG 58061

Other strains from Tsukamurella pulmonis

T. pulmonis DSM 44142, CCUG 35732, JCM 10111, ... (type strain)
T. pulmonis CCUG 38614
T. pulmonis CCUG 38678
T. pulmonis CCUG 39721
T. pulmonis CCUG 44913
T. pulmonis CCUG 47079
T. pulmonis CCUG 48420
T. pulmonis CCUG 49545
T. pulmonis CCUG 52011

Section

Tsukamurella pulmonis K362 is an aerobe, Gram-positive, rod-shaped bacterium that was isolated from deep marine sponge.

Gram-positive
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Tsukamurellaceae*
	Genus	*Tsukamurella*
	Species	**Tsukamurella pulmonis**
	Full Scientific Name (LPSN)	Tsukamurella pulmonis Yassin et al. 1996

Synonym

Tsukamurella spongiae

Information on morphological and physiological properties Morphology

[Ref.: #32031]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #32031]	Cell length	3.5 µm

[Ref.: #32031]	Cell width	1 µm

[Ref.: #32031]	Cell shape	rod-shaped

[Ref.: #32031]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %93.121

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #32031]	growth	25-45 °C
[Ref.: #32031]	optimum	31 °C
[Ref.: #61582]	growth	28 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #32031]	Temperature range	mesophilic
[Ref.: #61582]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32031]	Oxygen tolerance	aerobe
[Ref.: #61582]	Oxygen tolerance	aerobe

[Ref.: #32031]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.997

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32031]		NaCl		growth	0.0-4.0	%
[Ref.: #32031]		NaCl		optimum	0.5	%

[Ref.: #32031]

Observation

aggregates in clumps

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32031]	arabinose ChEBI	+	carbon source
[Ref.: #32031]	cellobiose ChEBI	+	carbon source
[Ref.: #32031]	fructose ChEBI	+	carbon source
[Ref.: #32031]	galactose ChEBI	+	carbon source
[Ref.: #32031]	glucose ChEBI	+	carbon source
[Ref.: #32031]	L-arabitol ChEBI	+	carbon source
[Ref.: #32031]	mannitol ChEBI	+	carbon source
[Ref.: #32031]	mannose ChEBI	+	carbon source
[Ref.: #32031]	melibiose ChEBI	+	carbon source
[Ref.: #32031]	rhamnose ChEBI	+	carbon source
[Ref.: #32031]	ribose ChEBI	+	carbon source
[Ref.: #32031]	salicin ChEBI	+	carbon source
[Ref.: #32031]	sorbitol ChEBI	+	carbon source
[Ref.: #32031]	sucrose ChEBI	+	carbon source
[Ref.: #32031]	trehalose ChEBI	+	carbon source
[Ref.: #32031]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #32031]	Sample type/isolated from	deep marine sponge

[Ref.: #61582]	Sample type/isolated from	Deep-water marine hexactinellid sponge
[Ref.: #61582]	Geographic location (country and/or sea, region)	of the coast Antilles Curaçao
[Ref.: #61582]	Country	Netherlands
[Ref.: #61582]	Country ISO 3 Code	NLD
[Ref.: #61582]	Continent	Middle and South America

[Ref.: #67770]	Sample type/isolated from	Deep-water marine hexactinellid sponge with associated zoanthids
[Ref.: #67770]	Geographic location (country and/or sea, region)	coast of Curaçao
[Ref.: #67770]	Country	Netherlands Antilles
[Ref.: #67770]	Country ISO 3 Code	NLD
[Ref.: #67770]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Host	#Invertebrates (Other)	#Porifera (Sponges)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KF410344 (>99% sequence identity) for Tsukamurella from Microbeatlas

Aquatic Samples	2978
Soil Samples	3431
Animal Samples	5160
Plant Samples	790
Total Samples	12359

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #32031]	Tsukamurella spongiae strain K362 16S ribosomal RNA gene, partial sequence	AY714239	1480	GenBank	47312 tax ID
[Ref.: #67770]	Tsukamurella spongiae strain DSM 44990 16S ribosomal RNA gene, partial sequence	KF410344	1480	ENA	47312 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Tsukamurella pulmonis DSM 44990	GCA_001575215	contig	GenBank	47312 tax ID
[Ref.: #66792]	Tsukamurella pulmonis strain DSM 44990	47312.11	wgs	PATRIC	47312 tax ID	*
[Ref.: #66792]	Tsukamurella pulmonis DSM 44990	2700989556	draft	JGI IMG/M	47312 tax ID	*

[Ref.: #32031]	GC-content	74.6 mol%
[Ref.: #67770]	GC-content	71.1 mol%	genome sequence analysis
[Ref.: #67770]	GC-content	71 mol%	genome sequence analysis
[Ref.: #67770]	GC-content	74.6 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Tsukamurella pulmonis strain DSM 44990 PATRIC: 47312.11
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Tsukamurella pulmonis strain DSM 44990 PATRIC: 47312.11
[Ref.: #69480]	gram-positive	yes	89.733	yes
[Ref.: #69480]	anaerobic	no	99.607	no
[Ref.: #69480]	halophile	no	93.626	yes
[Ref.: #69480]	spore-forming	no	84.51	yes
[Ref.: #69480]	glucose-util	yes	91.775	yes
[Ref.: #69480]	aerobic	yes	93.802	yes
[Ref.: #69480]	flagellated	no	97.346	no
[Ref.: #69480]	thermophile	no	99.201	yes
[Ref.: #69480]	motile	no	93.296	yes
[Ref.: #69480]	glucose-ferment	no	89.604	no

Availability in culture collections External links

[Ref.: #32031]

Culture collection no.

CCUG 58061, JCM 14882, DSM 44990, NRRL B-24467, JCM 18308, IFM 10862

[Ref.: #91828]

SI-ID 297472

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Tsukamurella spongiae sp. nov., a novel actinomycete isolated from a deep-water marine sponge.	Olson JB, Harmody DK, Bej AK, McCarthy PJ	Int J Syst Evol Microbiol	10.1099/ijs.0.64837-0	2007	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32031

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28282 (see below)

#61582 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 58061

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#91828

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID297472.1 )

#28282

IJSEM 1478 2007 ( DOI 10.1099/ijs.0.64837-0 , PubMed 17625179 )

* These data were automatically processed and therefore are not curated

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Tsukamurella pulmonis strain DSM 44990

Tsukamurella pulmonis strain DSM 44990

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