Tsukamurella pulmonis (CCUG 58061, JCM 14882, DSM 44990)

Name: Tsukamurella pulmonis (CCUG 58061, JCM 14882, DSM 44990)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 134234

Type strain

Strain Designation K362

Culture col. no. CCUG 58061 JCM 14882 DSM 44990 NRRL B-24467 K362 2 more

NCBI tax ID(s) 47312

Special Collections DSMZ CCUG JCM Literature strains

History DSM 44990 <-- P. J. McCarthy K362 <-- J. Olson.

Links

Tsukamurella pulmonis K362 is an aerobe, Gram-positive, rod-shaped bacterium that was isolated from deep marine sponge.

Gram-positive rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 297472

DSM 44990,NRRL B-24467,JCM 14882,CCUG 58061

@ref 20215

Last LPSN update 2026-02-09 11:32:08

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Tsukamurellaceae

Genus Tsukamurella

Species Tsukamurella pulmonis

Full scientific name Tsukamurella pulmonis Yassin et al. 1996

Synonyms (1)

Tsukamurella spongiae

BacDive ID	Other strains from **Tsukamurella pulmonis** (9)	Type strain
17100	T. pulmonis DSM 44142, CCUG 35732, JCM 10111, IMMIB D-1321, ... (type strain)
149887	T. pulmonis CCUG 38614
149921	T. pulmonis CCUG 38678
150358	T. pulmonis CCUG 39721
151796	T. pulmonis CCUG 44913
152572	T. pulmonis CCUG 47079
153072	T. pulmonis CCUG 48420
153425	T. pulmonis CCUG 49545
154019	T. pulmonis CCUG 52011

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
32031	positive	3.5 µm	1 µm	rod-shaped
125438					93
125438	positive				91.309
125439	positive				99.4

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
32031	positive	growth	25-45
32031	positive	optimum	31
61582	positive	growth	28
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
32031	aerobe
61582	aerobe
125438	aerobe	90.336
125439	obligate aerobe	95.4

Spore formation

32031

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32031	NaCl	positive	growth	0.0-4.0 %
32031	NaCl	positive	optimum	0.5 %

Observation

32031

Observationaggregates in clumps

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32031	22599 ChEBI	arabinose	+	carbon source
32031	17057 ChEBI	cellobiose	+	carbon source
32031	28757 ChEBI	fructose	+	carbon source
32031	28260 ChEBI	galactose	+	carbon source
32031	17234 ChEBI	glucose	+	carbon source
32031	18403 ChEBI	L-arabitol	+	carbon source
32031	29864 ChEBI	mannitol	+	carbon source
32031	37684 ChEBI	mannose	+	carbon source
32031	28053 ChEBI	melibiose	+	carbon source
32031	26546 ChEBI	rhamnose	+	carbon source
32031	33942 ChEBI	ribose	+	carbon source
32031	17814 ChEBI	salicin	+	carbon source
32031	30911 ChEBI	sorbitol	+	carbon source
32031	17992 ChEBI	sucrose	+	carbon source
32031	27082 ChEBI	trehalose	+	carbon source
32031	18222 ChEBI	xylose	+	carbon source

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Host	#Invertebrates (Other)	#Porifera (Sponges)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
32031	deep marine sponge
61582	Deep-water marine hexactinellid sponge	of the coast Antilles Curaçao	Netherlands	NLD	Middle and South America
67770	Deep-water marine hexactinellid sponge with associated zoanthids	coast of Curaçao	Netherlands Antilles	NLD	North America

Taxonmaps

69479

Global distribution of 16S sequence KF410344 (>99% sequence identity) for Tsukamurella from Microbeatlas

Aquatic Samples	2978
Soil Samples	3431
Animal Samples	5160
Plant Samples	790
Total Samples	12359

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM157521v1 assembly for Tsukamurella pulmonis DSM 44990	contig	GCA_001575215	47312.11	2700989556	47312	69.35

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
32031	Tsukamurella spongiae strain K362 16S ribosomal RNA gene, partial sequence	AY714239	1480	47312
67770	Tsukamurella spongiae strain DSM 44990 16S ribosomal RNA gene, partial sequence	KF410344	1480	47312
124043	Tsukamurella pulmonis strain DSM 44990 16S ribosomal RNA gene, partial sequence.	KX924525	1221	47312

GC content

@ref	GC-content (mol%)	Method
32031	74.6
67770	71.1	genome sequence analysis
67770	71	genome sequence analysis
67770	74.6	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Tsukamurella pulmonis DSM 44990
NCBI: GCA_001575215

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	50.00	no
125439	motility	BacteriaNetⓘ	no	81.20	no
125439	gram_stain	BacteriaNetⓘ	positive	99.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	95.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Tsukamurella pulmonis strain DSM 44990
PATRIC: 47312.11

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	91.31	yes
125438	anaerobic	anaerobicⓘ	no	98.75	yes
125438	spore-forming	spore-formingⓘ	no	55.51	no
125438	aerobic	aerobicⓘ	yes	90.34	yes
125438	thermophilic	thermophileⓘ	no	97.00	no
125438	flagellated	motile2+ⓘ	no	93.00	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Phylogenomic Analyses and Reclassification of Species within the Genus Tsukamurella: Insights to Species Definition in the Post-genomic Era.	Teng JL, Tang Y, Huang Y, Guo FB, Wei W, Chen JH, Wong SS, Lau SK, Woo PC.	Front Microbiol	10.3389/fmicb.2016.01137	2016
	Reply to Perez del Molino Bernal and Agüero Balbin, "seqA1 Is a Useful Target for Identification of Tsukamurella pulmonis".	Teng JLL, Tang Y, Lau SKP, Woo PCY.	J Clin Microbiol	10.1128/jcm.00238-17	2017
Enzymology	MALDI-TOF MS for identification of Tsukamurella species: Tsukamurella tyrosinosolvens as the predominant species associated with ocular infections.	Teng JLL, Tang Y, Wong SSY, Fong JYH, Zhao Z, Wong CP, Chen JHK, Ngan AHY, Wu AKL, Fung KSC, Que TL, Lau SKP, Woo PCY.	Emerg Microbes Infect	10.1038/s41426-018-0083-4	2018
Genetics	Genome-Based Taxonomic Classification of the Phylum Actinobacteria.	Nouioui I, Carro L, Garcia-Lopez M, Meier-Kolthoff JP, Woyke T, Kyrpides NC, Pukall R, Klenk HP, Goodfellow M, Goker M.	Front Microbiol	10.3389/fmicb.2018.02007	2018
Phylogeny	Tsukamurella spongiae sp. nov., a novel actinomycete isolated from a deep-water marine sponge.	Olson JB, Harmody DK, Bej AK, McCarthy PJ	Int J Syst Evol Microbiol	10.1099/ijs.0.64837-0	2007

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28282	IJSEM 1478 2007 ( DOI 10.1099/ijs.0.64837-0 , PubMed 17625179 )
#32031	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28282
#61582	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 58061
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Tsukamurella pulmonis (CCUG 58061, JCM 14882, DSM 44990)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_001575215

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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