Strain identifier
BacDive ID: 17100
Type strain:
Species: Tsukamurella pulmonis
Strain history: CIP <- 1996, A.F. Yassin, Bonn Univ., Bonn, Germany: strain IMMIB D-1321
NCBI tax ID(s): 47312 (species)
General
@ref: 11519
BacDive-ID: 17100
DSM-Number: 44142
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic
description: Tsukamurella pulmonis DSM 44142 is an aerobe, mesophilic bacterium that was isolated from sputum of an 92 year old woman with lung tuberculosis.
NCBI tax id
- NCBI tax id: 47312
- Matching level: species
strain history
@ref | history |
---|---|
11519 | <- A. F. Yassin, IMMIB; IMMIB D-1321 |
67770 | DSM 44142 <-- A. F. Yassin IMMIB D-1321. |
122050 | CIP <- 1996, A.F. Yassin, Bonn Univ., Bonn, Germany: strain IMMIB D-1321 |
doi: 10.13145/bacdive17100.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Tsukamurellaceae
- genus: Tsukamurella
- species: Tsukamurella pulmonis
- full scientific name: Tsukamurella pulmonis Yassin et al. 1996
synonyms
- @ref: 20215
- synonym: Tsukamurella spongiae
@ref: 11519
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Tsukamurellaceae
genus: Tsukamurella
species: Tsukamurella pulmonis
full scientific name: Tsukamurella pulmonis Yassin et al. 1996 emend. Teng et al. 2016
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain | cell shape |
---|---|---|---|---|
69480 | no | 91.659 | ||
69480 | 100 | positive | ||
122050 | no | positive | rod-shaped |
colony morphology
@ref | colony color | incubation period | medium used |
---|---|---|---|
20005 | Pastel yellow (1034) | 10-14 days | ISP 2 |
20005 | Pastel yellow (1034) | 10-14 days | ISP 3 |
20005 | Pastel yellow (1034) | 10-14 days | ISP 4 |
20005 | Pastel yellow (1034) | 10-14 days | ISP 5 |
20005 | Pastel yellow (1034) | 10-14 days | ISP 6 |
20005 | Pastel yellow (1034) | 10-14 days | ISP 7 |
52945 | 2-3 days | ||
122050 |
multicellular morphology
@ref | forms multicellular complex | medium name |
---|---|---|
20005 | no | ISP 2 |
20005 | no | ISP 3 |
20005 | no | ISP 4 |
20005 | no | ISP 5 |
20005 | no | ISP 6 |
20005 | no | ISP 7 |
multimedia
- @ref: 11519
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_44142.jpg
- caption: Medium 535 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
11519 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | yes | https://mediadive.dsmz.de/medium/535 | Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water |
20005 | ISP 2 | yes | Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes | |
20005 | ISP 3 | yes | Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms: | |
20005 | ISP 4 | yes | Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml | |
20005 | ISP 5 | yes | Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes | |
20005 | ISP 6 | yes | Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes | |
20005 | ISP 7 | yes | Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes | |
42108 | MEDIUM 29- Brain heart agar | yes | Distilled water make up to (1000.000 ml);Brain heart infusion agar (52.000 g) | |
11519 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
122050 | CIP Medium 29 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=29 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
11519 | positive | growth | 28 | mesophilic |
42108 | positive | growth | 30 | mesophilic |
52945 | positive | growth | 37 | mesophilic |
67770 | positive | growth | 28 | mesophilic |
122050 | positive | growth | 15-41 | |
122050 | no | growth | 10 | psychrophilic |
122050 | no | growth | 45 | thermophilic |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
52945 | aerobe |
122050 | obligate aerobe |
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 93 |
69480 | no | 99.969 |
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
20005 | NaCl | positive | maximum | 7.5 % |
122050 | NaCl | positive | growth | 0-8 % |
122050 | NaCl | no | growth | 10 % |
observation
- @ref: 67770
- observation: quinones: MK-9, MK-10, MK-8
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68368 | 5291 | gelatin | - | hydrolysis |
68368 | 27897 | tryptophan | - | energy source |
68368 | 16199 | urea | + | hydrolysis |
68368 | 16947 | citrate | - | assimilation |
68368 | 18257 | ornithine | + | degradation |
68368 | 25094 | lysine | + | degradation |
68368 | 29016 | arginine | + | hydrolysis |
122050 | 16947 | citrate | + | carbon source |
122050 | 4853 | esculin | + | hydrolysis |
122050 | 606565 | hippurate | - | hydrolysis |
122050 | 17632 | nitrate | - | reduction |
122050 | 16301 | nitrite | - | reduction |
122050 | 17632 | nitrate | - | respiration |
68379 | 17632 | nitrate | - | reduction |
68379 | 4853 | esculin | + | hydrolysis |
68379 | 16199 | urea | - | hydrolysis |
68379 | 5291 | gelatin | - | hydrolysis |
68379 | 17634 | D-glucose | - | fermentation |
68379 | 16988 | D-ribose | - | fermentation |
68379 | 65327 | D-xylose | - | fermentation |
68379 | 16899 | D-mannitol | - | fermentation |
68379 | 17306 | maltose | - | fermentation |
68379 | 17716 | lactose | - | fermentation |
68379 | 17992 | sucrose | - | fermentation |
68379 | 28087 | glycogen | - | fermentation |
antibiotic resistance
- @ref: 122050
- metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
- is antibiotic: yes
- is sensitive: yes
- is resistant: no
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68368 | 15688 | acetoin | no |
68368 | 35581 | indole | no |
68368 | 16136 | hydrogen sulfide | no |
122050 | 35581 | indole | no |
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | indole test | methylred-test |
---|---|---|---|---|---|
68368 | 15688 | acetoin | - | ||
68368 | 35581 | indole | - | ||
122050 | 15688 | acetoin | - | ||
122050 | 17234 | glucose | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68379 | gelatinase | - | |
68379 | urease | - | 3.5.1.5 |
68379 | beta-glucosidase | + | 3.2.1.21 |
68379 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68379 | alpha-glucosidase | + | 3.2.1.20 |
68379 | beta-galactosidase | - | 3.2.1.23 |
68379 | beta-glucuronidase | - | 3.2.1.31 |
68379 | alkaline phosphatase | + | 3.1.3.1 |
68379 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
68379 | pyrazinamidase | - | 3.5.1.B15 |
68368 | gelatinase | - | |
68368 | tryptophan deaminase | - | 4.1.99.1 |
68368 | urease | + | 3.5.1.5 |
68368 | ornithine decarboxylase | + | 4.1.1.17 |
68368 | lysine decarboxylase | + | 4.1.1.18 |
68368 | arginine dihydrolase | + | 3.5.3.6 |
68368 | beta-galactosidase | - | 3.2.1.23 |
122050 | oxidase | - | |
122050 | beta-galactosidase | + | 3.2.1.23 |
122050 | alcohol dehydrogenase | - | 1.1.1.1 |
122050 | gelatinase | - | |
122050 | amylase | - | |
122050 | DNase | + | |
122050 | caseinase | - | 3.4.21.50 |
122050 | catalase | + | 1.11.1.6 |
122050 | tween esterase | + | |
122050 | gamma-glutamyltransferase | - | 2.3.2.2 |
122050 | lecithinase | - | |
122050 | lipase | - | |
122050 | lysine decarboxylase | - | 4.1.1.18 |
122050 | ornithine decarboxylase | - | 4.1.1.17 |
122050 | phenylalanine ammonia-lyase | - | 4.3.1.24 |
122050 | protease | - | |
122050 | tryptophan deaminase | - | |
122050 | urease | + | 3.5.1.5 |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucosidase | + | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API coryne
@ref | NIT | PYZ | PYRA | PAL | beta GUR | beta GAL | alpha GLU | beta NAG | ESC | URE | GEL | GLU | RIB | XYL | MAN | MAL | LAC | SAC | GLYG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
20005 | - | - | - | + | - | - | + | - | + | - | - | - | - | - | - | - | - | - | - |
API zym
@ref | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase | Control |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
20005 | + | + | + | + | + | + | + | + | - | + | + | - | - | - | + | + | - | + | - | |
122050 | + | + | + | - | + | - | - | - | - | + | - | - | - | - | + | + | - | - | - | - |
API 20E
@ref | ONPG | ADH Arg | LDC Lys | ODC | CIT | H2S | URE | TDA Trp | IND | VP | GEL |
---|---|---|---|---|---|---|---|---|---|---|---|
20005 | - | + | + | + | - | - | + | - | - | - | - |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
122050 | + | + | + | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | + | - | + | - | - | - | - | + | - | + | - | + | + | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | + | - | - | - | - | - | + | + | - | - | - | - | + | - | - | - | - | - | - | + | + | - | + | - | + | + | + | - | - | - | - | + | - | + | - | + | - | + | + | + | + | + | - | + | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent | latitude | longitude |
---|---|---|---|---|---|---|---|
11519 | sputum of an 92 year old woman with lung tuberculosis | Munich, Gauting | Germany | DEU | Europe | 48.0668 | 11.3537 |
52945 | Human sputum,92-yr-old woman w/ lung tuberculosis | ||||||
67770 | Sputum of a 92-year-old woman who suffered from pulmonary tuberculosis | ||||||
122050 | Human, Sputum | Gauting | Germany | DEU | Europe |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Infection | #Disease | #Tuberculosis |
#Host | #Human | #Female |
#Host Body-Site | #Oral cavity and airways | #Lung |
#Host Body Product | #Fluids | #Sputum |
taxonmaps
- @ref: 69479
- File name: preview.99_3845.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_1974;97_2373;98_2929;99_3845&stattab=map
- Last taxonomy: Tsukamurella
- 16S sequence: X92981
- Sequence Identity:
- Total samples: 12359
- soil counts: 3431
- aquatic counts: 2978
- animal counts: 5160
- plant counts: 790
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
11519 | 2 | Risk group (German classification) |
20005 | 2 | German classification |
122050 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Tsukamurella pulmonis strain DSM 44142 note copy 1 16S-23S ribosomal RNA intergenic spacer, complete sequence | AF536514 | 442 | ena | 47312 |
20218 | Tsukamurella pulmonis strain DSM 44142 note copy 2 16S-23S ribosomal RNA intergenic spacer, complete sequence | AF536515 | 442 | ena | 47312 |
20218 | Tsukamurella pulmonis strain DSM 44142 note copy 3 16S-23S ribosomal RNA intergenic spacer, complete sequence | AF536516 | 442 | ena | 47312 |
20218 | Tsukamurella pulmonis strain DSM 44142 note copy 4 16S-23S ribosomal RNA intergenic spacer, complete sequence | AF536517 | 442 | ena | 47312 |
11519 | Tsukamurella pulmonis 16S rRNA gene, strain IMMIB D-1321T | X92981 | 1460 | ena | 47312 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Tsukamurella pulmonis strain CCUG 35732 | 47312.10 | wgs | patric | 47312 |
66792 | Tsukamurella pulmonis strain DSM 44142 | 47312.12 | wgs | patric | 47312 |
66792 | Tsukamurella pulmonis strain NCTC13230 | 47312.13 | wgs | patric | 47312 |
66792 | Tsukamurella pulmonis CCUG 35732 | 2700989555 | draft | img | 47312 |
66792 | Tsukamurella pulmonis DSM 44142 | 2634166370 | draft | img | 47312 |
66792 | Tsukamurella pulmonis NCTC 13230 | 2835265895 | draft | img | 47312 |
67770 | Tsukamurella pulmonis DSM 44142 | GCA_900103175 | contig | ncbi | 47312 |
67770 | Tsukamurella pulmonis CCUG 35732 | GCA_001575165 | contig | ncbi | 47312 |
67770 | Tsukamurella pulmonis NCTC13230 | GCA_900460155 | contig | ncbi | 47312 |
GC content
@ref | GC-content | method |
---|---|---|
11519 | 70.4 | sequence analysis |
67770 | 70.4 | genome sequence analysis |
67770 | 69.8 | high performance liquid chromatography (HPLC) |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 93 | no |
gram-positive | yes | 88.947 | no |
anaerobic | no | 99.648 | yes |
halophile | no | 93.117 | no |
spore-forming | no | 87.421 | no |
glucose-util | yes | 91.678 | no |
aerobic | yes | 92.927 | yes |
flagellated | no | 97.404 | no |
thermophile | no | 99.247 | yes |
motile | no | 92.909 | no |
glucose-ferment | no | 89.883 | yes |
External links
@ref: 11519
culture collection no.: DSM 44142, CCUG 35732, JCM 10111, IMMIB D-1321, ATCC 700081, CIP 104791, IFM 0809, KCTC 9963, NCTC 13230, PCM 2578
straininfo link
- @ref: 86100
- straininfo: 43761
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 8934902 | Tsukamurella pulmonis sp. nov. | Yassin AF, Rainey FA, Brzezinka H, Burghardt J, Rifai M, Seifert P, Feldmann K, Schaal KP | Int J Syst Bacteriol | 10.1099/00207713-46-2-429 | 1996 | Aged, Aged, 80 and over, Bacterial Proteins/analysis, Base Sequence, Cytosine/analysis, DNA, Bacterial/analysis, Female, Guanine/analysis, Humans, Lipids/analysis, Microscopy, Electron, Scanning, Molecular Sequence Data, Mycobacterium/*classification/genetics/ultrastructure, Mycobacterium Infections/*microbiology, Phylogeny, Pneumonia/microbiology, RNA, Ribosomal, 16S/analysis | Pathogenicity |
Phylogeny | 9226890 | Tsukamurella tyrosinosolvens sp. nov. | Yassin AF, Rainey FA, Burghardt J, Brzezinka H, Schmitt S, Seifert P, Zimmermann O, Mauch H, Gierth D, Lux I, Schaal KP | Int J Syst Bacteriol | 10.1099/00207713-47-3-607 | 1997 | Actinomycetales/*classification/*genetics/ultrastructure, Actinomycetales Infections/*microbiology, Bacterial Proteins/analysis, Blood/microbiology, Chromatography, Thin Layer, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Humans, Lipids/analysis, Microscopy, Electron, Scanning, Molecular Sequence Data, Phylogeny | Pathogenicity |
Phylogeny | 19262077 | [A case of catheter-related bacteremia of Tsukamurella pulmonis]. | Shim HE, Sung H, Baek SM, Namgung S, Kim MN, Kim YG, Lee GH | Korean J Lab Med | 10.3343/kjlm.2009.29.1.41 | 2009 | Actinomycetales/classification/genetics/isolation & purification, Actinomycetales Infections/diagnosis/*microbiology/therapy, Adult, Bacteremia/*diagnosis/microbiology/therapy, Bone Marrow Transplantation, Catheter-Related Infections/*microbiology, Humans, Leukemia, Myeloid, Acute/therapy, Male, Phylogeny, RNA, Ribosomal, 16S/genetics | Pathogenicity |
Phylogeny | 26530900 | Tsukamurella hongkongensis sp. nov. and Tsukamurella sinensis sp. nov., isolated from patients with keratitis, catheter-related bacteraemia and conjunctivitis. | Teng JLL, Tang Y, Wong SSY, Ngan AHY, Huang Y, Tsang CC, Choi GKY, Lau SKP, Woo PCY | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000733 | 2015 | Actinomycetales/*classification/genetics/isolation & purification, Adult, Bacteremia/*microbiology, Bacterial Typing Techniques, Base Composition, Catheters, Indwelling/microbiology, Conjunctiva/microbiology, Conjunctivitis/*microbiology, Cornea/microbiology, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Hong Kong, Humans, Keratitis/*microbiology, Male, Middle Aged, Molecular Sequence Data, Mycolic Acids/chemistry, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Pathogenicity |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
11519 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44142) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-44142 | |||
20005 | Wink, J. | http://www.dsmz.de/microorganisms/wink_pdf/DSM44142.pdf | Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
42108 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/16738 | ||||
52945 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 35732) | https://www.ccug.se/strain?id=35732 | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68368 | Automatically annotated from API 20E | |||||
68379 | Automatically annotated from API Coryne | |||||
68382 | Automatically annotated from API zym | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
86100 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID43761.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
122050 | Curators of the CIP | Collection of Institut Pasteur (CIP 104791) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104791 |