Petrotoga olearia (DSM 13574, JCM 11234, SL24)

Name: Petrotoga olearia (DSM 13574, JCM 11234, SL24)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17049

Type strain

Strain Designation SL24

Culture col. no. DSM 13574 JCM 11234 SL24

NCBI tax ID(s) 1122955 156203

Special Collections DSMZ JCM

Links

Petrotoga olearia SL24 is an anaerobe, thermophilic prokaryote that was isolated from oil/water mixtures from production well-heads of a deep, continental petroleum reservoir.

anaerobe thermophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 100861

DSM 13574,JCM 11234

@ref 20215

Last LPSN update 2025-12-16 09:50:59

Domain Thermotogati

Phylum Thermotogota

Class Thermotogae

Order Petrotogales

Family Petrotogaceae

Genus Petrotoga

Species Petrotoga olearia

Full scientific name Petrotoga olearia L'Haridon et al. 2002

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
5090	PETROTOGA OLEARIA MEDIUM (DSMZ Medium 959)		Medium recipe at MediaDive	Name: PETROTOGA OLEARIA MEDIUM (DSMZ Medium 959) Composition: NaCl 15.0 g/l Maltose 3.5 g/l PIPES 3.4 g/l Na-acetate x 3 H2O 2.72 g/l Trypticase peptone 2.0 g/l Yeast extract 2.0 g/l NH4Cl 1.0 g/l Na2S x 9 H2O 0.5 g/l MgCl2 x 6 H2O 0.5 g/l K2HPO4 0.35 g/l KH2PO4 0.35 g/l KCl 0.2 g/l CaCl2 x 2 H2O 0.1 g/l Sodium resazurin 0.0005 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
5090	positive	growth	55	thermophilic
67770	positive	growth	55	thermophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
5090	anaerobe
125439	anaerobe	95.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Industrial	#Oil reservoir
#Environmental	#Aquatic	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
5090	oil/water mixtures from production well-heads of a deep, continental petroleum reservoir	Western Siberia	Russia	RUS	Asia
67770	Deep	Western Siberia	Russia	RUS

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
5090	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM289552v1 assembly for Petrotoga olearia DSM 13574	scaffold	GCA_002895525	1122955.3	2987196469	1122955	74.01
67770	ASM368850v1 assembly for Petrotoga olearia DSM 13574	scaffold	GCA_003688505	156203.3	2757320361	156203	72.69

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Petrotoga olearia 16S rRNA gene, strain SL24T	AJ311703	1475		156203

GC content

@ref	GC-content (mol%)	Method
5090	35	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Petrotoga olearia DSM 13574
NCBI: GCA_002895525

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	95.10	no
125439	gram_stain	BacteriaNetⓘ	negative	65.10	no
125439	motility	BacteriaNetⓘ	no	67.90	no
125439	spore_formation	BacteriaNetⓘ	no	87.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Petrotoga olearia DSM 13574
PATRIC: 1122955.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	73.15	no
125438	anaerobic	anaerobicⓘ	yes	89.23	no
125438	spore-forming	spore-formingⓘ	no	76.77	no
125438	aerobic	aerobicⓘ	no	93.10	yes
125438	thermophilic	thermophileⓘ	yes	69.22	yes
125438	flagellated	motile2+ⓘ	yes	54.25	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Methanogenesis and Salt Tolerance Genes of a Novel Halophilic Methanosarcinaceae Metagenome-Assembled Genome from a Former Solar Saltern.	Bueno de Mesquita CP, Zhou J, Theroux SM, Tringe SG.	Genes (Basel)	10.3390/genes12101609	2021
Enzymology	Characterization of the GH13 and GH57 glycogen branching enzymes from Petrotoga mobilis SJ95 and potential role in glycogen biosynthesis.	Zhang X, Leemhuis H, van der Maarel MJEC.	PLoS One	10.1371/journal.pone.0219844	2019
Phylogeny	Lechevalieria atacamensis sp. nov., Lechevalieria deserti sp. nov. and Lechevalieria roselyniae sp. nov., isolated from hyperarid soils.	Okoro CK, Bull AT, Mutreja A, Rong X, Huang Y, Goodfellow M.	Int J Syst Evol Microbiol	10.1099/ijs.0.009985-0	2010
Phylogeny	Petrotoga olearia sp. nov. and Petrotoga sibirica sp. nov., two thermophilic bacteria isolated from a continental petroleum reservoir in Western Siberia.	L'Haridon S, Miroshnichenko ML, Hippe H, Fardeau ML, Bonch-Osmolovskaya EA, Stackebrandt E, Jeanthon C	Int J Syst Evol Microbiol	10.1099/00207713-52-5-1715	2002

References

#5090	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13574
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Petrotoga olearia (DSM 13574, JCM 11234, SL24)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_002895525

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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