Name: Petrotoga olearia SL24
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 17049

Type strain:

Species: Petrotoga olearia

Strain Designation: SL24

Culture col. no.: DSM 13574, JCM 11234

Strain history: S. L'Haridon SL24.

NCBI tax ID(s): 1122955 (strain), 156203 (species)

SI-ID 100861

DSM 13574, JCM 11234

Special Collections

DSMZ
JCM

Section

Petrotoga olearia SL24 is an anaerobe, Gram-negative bacterium that was isolated from oil/water mixtures from production well-heads of a deep, continental petroleum reservoir.

Gram-negative
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Thermotogota*
	Class	*Thermotogae*
	Order	*Petrotogales*
	Family	*Petrotogaceae*
	Genus	*Petrotoga*
	Species	**Petrotoga olearia**
	Full Scientific Name (LPSN)	Petrotoga olearia L'Haridon et al. 2002

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5090]

Culture medium

PETROTOGA OLEARIA MEDIUM (DSMZ Medium 959)

[Ref.: #5090]

Culture medium growth

[Ref.: #5090]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5090]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #5090]			growth	55 °C
[Ref.: #67770]			growth	55 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #5090]

Oxygen tolerance

anaerobe

[Ref.: #69481]

Ability of spore formation

no Confidence in %99

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5090]	Sample type/isolated from	oil/water mixtures from production well-heads of a deep, continental petroleum reservoir
[Ref.: #5090]	Geographic location (country and/or sea, region)	Western Siberia
[Ref.: #5090]	Country	Russia
[Ref.: #5090]	Country ISO 3 Code	RUS
[Ref.: #5090]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Deep
[Ref.: #67770]	Geographic location (country and/or sea, region)	Western Siberia
[Ref.: #67770]	Country	Russia
[Ref.: #67770]	Country ISO 3 Code	RUS
* marker position based on {}

Isolation sources categories

#Engineered	#Industrial	#Oil reservoir
#Environmental	#Aquatic	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5090]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Petrotoga olearia 16S rRNA gene, strain SL24T	AJ311703	1475	GenBank ENA	156203 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Petrotoga olearia DSM 13574	GCA_002895525	scaffold	GenBank ENA	1122955 tax ID
[Ref.: #67770]	Petrotoga olearia DSM 13574	GCA_003688505	scaffold	GenBank ENA	156203 tax ID
[Ref.: #66792]	Petrotoga olearia DSM 13574	1122955.3	wgs	PATRIC	1122955 tax ID	*
[Ref.: #66792]	Petrotoga olearia strain DSM 13574	156203.3	wgs	PATRIC	156203 tax ID	*
[Ref.: #66792]	Petrotoga olearia DSM 13574	2757320361	draft	JGI IMG/M	156203 tax ID	*

[Ref.: #5090]

GC-content

35 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Petrotoga olearia DSM 13574 DSM 13574 NCBI: GCA_002895525.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	99	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Petrotoga olearia DSM 13574 PATRIC: 1122955.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	73.145	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	89.233	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	76.768	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	93.097	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	yes	69.215	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	54.248	no

Availability in culture collections External links

[Ref.: #5090]

Culture collection no.

DSM 13574, JCM 11234

[Ref.: #86049]

SI-ID 100861

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Petrotoga olearia sp. nov. and Petrotoga sibirica sp. nov., two thermophilic bacteria isolated from a continental petroleum reservoir in Western Siberia.	L'Haridon S, Miroshnichenko ML, Hippe H, Fardeau ML, Bonch-Osmolovskaya EA, Stackebrandt E, Jeanthon C	Int J Syst Evol Microbiol	10.1099/00207713-52-5-1715	2002	*

References

#5090

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13574

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86049

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID100861.1 )

* These data were automatically processed and therefore are not curated

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Petrotoga olearia DSM 13574 DSM 13574

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