Name: Petrotoga sibirica SL25
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17050

Type strain:

Species: Petrotoga sibirica

Strain Designation: SL25

Culture col. no.: DSM 13575, JCM 11235

Strain history: S. L'Haridon SL25.

NCBI tax ID(s): 1122956 (strain), 156202 (species)

SI-ID 100862

DSM 13575, JCM 11235

Section

Petrotoga sibirica SL25 is an anaerobe, thermophilic, Gram-negative bacterium that was isolated from oil/water mixtures from production well-heads of a deep, continental petroleum reservoir.

Gram-negative
anaerobe
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Thermotogota*
	Class	*Thermotogae*
	Order	*Petrotogales*
	Family	*Petrotogaceae*
	Genus	*Petrotoga*
	Species	**Petrotoga sibirica**
	Full Scientific Name (LPSN)	Petrotoga sibirica L'Haridon et al. 2002

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.819

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5091]

Culture medium

PETROTOGA OLEARIA MEDIUM (DSMZ Medium 959)

[Ref.: #5091]

Culture medium growth

[Ref.: #5091]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5091]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #5091]			growth	55 °C
[Ref.: #67770]			growth	55 °C

[Ref.: #5091]	Temperature range	thermophilic
[Ref.: #67770]	Temperature range	thermophilic
[Ref.: #69480]	Temperature range	thermophilic Confidence in %100

Information on physiology and metabolism Physiology and metabolism

[Ref.: #5091]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %100

[Ref.: #69481]	Ability of spore formation	no Confidence in %99
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.982

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5091]	Sample type/isolated from	oil/water mixtures from production well-heads of a deep, continental petroleum reservoir
[Ref.: #5091]	Geographic location (country and/or sea, region)	Western Siberia
[Ref.: #5091]	Country	Russia
[Ref.: #5091]	Country ISO 3 Code	RUS
[Ref.: #5091]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Deep, continental oil reservoir
[Ref.: #67770]	Geographic location (country and/or sea, region)	Western Siberia
[Ref.: #67770]	Country	Russia
[Ref.: #67770]	Country ISO 3 Code	RUS
* marker position based on {}

Isolation sources categories

#Engineered	#Industrial	#Oil reservoir
#Environmental	#Aquatic	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5091]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Petrotoga siberica 16S rRNA gene, strain SL25T	AJ311702	1482	ENA	156202 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Petrotoga sibirica DSM 13575	GCA_002924625	contig	GenBank	1122956 tax ID
[Ref.: #67770]	Petrotoga sibirica DSM 13575	GCA_004366085	scaffold	GenBank	156202 tax ID
[Ref.: #66792]	Petrotoga sibirica DSM 13575	1122956.3	wgs	PATRIC	1122956 tax ID	*
[Ref.: #66792]	Petrotoga sibirica strain DSM 13575	156202.3	wgs	PATRIC	156202 tax ID	*
[Ref.: #66792]	Petrotoga sibirica DSM 13575	2756170166	draft	JGI IMG/M	156202 tax ID	*

[Ref.: #5091]

GC-content

33 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Petrotoga sibirica DSM 13575 PATRIC: 1122956.3
[Ref.: #69481]	spore-forming	no	99	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Petrotoga sibirica DSM 13575 PATRIC: 1122956.3
[Ref.: #69480]	motile	yes	74.959	no
[Ref.: #69480]	flagellated	no	92.109	no
[Ref.: #69480]	gram-positive	no	92.292	no
[Ref.: #69480]	anaerobic	yes	99.238	yes
[Ref.: #69480]	aerobic	no	98.199	no
[Ref.: #69480]	halophile	no	88.783	no
[Ref.: #69480]	spore-forming	no	88.209	no
[Ref.: #69480]	glucose-util	yes	88.137	no
[Ref.: #69480]	thermophile	yes	100	yes
[Ref.: #69480]	glucose-ferment	yes	55.546	no

Availability in culture collections External links

[Ref.: #5091]

Culture collection no.

DSM 13575, JCM 11235

[Ref.: #86050]

SI-ID 100862

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Petrotoga olearia sp. nov. and Petrotoga sibirica sp. nov., two thermophilic bacteria isolated from a continental petroleum reservoir in Western Siberia.	L'Haridon S, Miroshnichenko ML, Hippe H, Fardeau ML, Bonch-Osmolovskaya EA, Stackebrandt E, Jeanthon C	Int J Syst Evol Microbiol	10.1099/00207713-52-5-1715	2002	*

References

#5091

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13575

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86050

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID100862.1 )

* These data were automatically processed and therefore are not curated

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Petrotoga sibirica DSM 13575

Petrotoga sibirica DSM 13575

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