Name: Petrotoga mexicana DSM 14811
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 17048

Type strain:

Species: Petrotoga mexicana

Culture col. no.: DSM 14811, CIP 107371, MET met12, MET 12

Strain history: <- B. Ollivier, IRD; met12 <- E. Miranda {2000}

NCBI tax ID(s): 1122954 (strain), 204046 (species)

SI-ID 97647

CIP 107371, DSM 14811

Special Collections

Section

Petrotoga mexicana DSM 14811 is an anaerobe, Gram-negative, motile bacterium that was isolated from oil well.

Gram-negative
motile
rod-shaped
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Thermotogota*
	Class	*Thermotogae*
	Order	*Petrotogales*
	Family	*Petrotogaceae*
	Genus	*Petrotoga*
	Species	**Petrotoga mexicana**
	Full Scientific Name (LPSN)	Petrotoga mexicana Miranda-Tello et al. 2004

Information on morphological and physiological properties Morphology

[Ref.: #29933]	Gram stain	negative

[Ref.: #29933]	Cell length	1.4-5.0 µm

[Ref.: #29933]	Cell width	0.5-0.7 µm

[Ref.: #29933]	Cell shape	rod-shaped

[Ref.: #29933]	Motility	yes

[Ref.: #29933]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5558]

Culture medium

PETROTOGA MEDIUM (DSMZ Medium 718)

[Ref.: #5558]

Culture medium growth

[Ref.: #5558]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5558]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #5558]	growth	55 °C
[Ref.: #29933]	growth	25-65 °C
[Ref.: #29933]	optimum	55 °C

	pH	Kind of pH		pH
[Ref.: #29933]			optimum	6.6
[Ref.: #29933]			growth	5.8-8.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #5558]	Oxygen tolerance	anaerobe
[Ref.: #29933]	Oxygen tolerance	aerobe

[Ref.: #29933]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %98

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29933]		NaCl		growth	0-20	%
[Ref.: #29933]		NaCl		optimum	0.15	%

[Ref.: #29933]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29933]	arabinose ChEBI	+	carbon source
[Ref.: #29933]	cellobiose ChEBI	+	carbon source
[Ref.: #29933]	fucose ChEBI	+	carbon source
[Ref.: #29933]	galactose ChEBI	+	carbon source
[Ref.: #29933]	glucose ChEBI	+	carbon source
[Ref.: #29933]	lactose ChEBI	+	carbon source
[Ref.: #29933]	maltose ChEBI	+	carbon source
[Ref.: #29933]	mannose ChEBI	+	carbon source
[Ref.: #29933]	pyruvate ChEBI	+	carbon source
[Ref.: #29933]	raffinose ChEBI	+	carbon source
[Ref.: #29933]	rhamnose ChEBI	+	carbon source
[Ref.: #29933]	ribose ChEBI	+	carbon source
[Ref.: #29933]	sucrose ChEBI	+	carbon source
[Ref.: #29933]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5558]	Sample type/isolated from	oil well
[Ref.: #5558]	Geographic location (country and/or sea, region)	Gulf of Mexico
[Ref.: #5558]	Country	Mexico
[Ref.: #5558]	Country ISO 3 Code	MEX
[Ref.: #5558]	Continent	North America
* marker position based on {}

Isolation sources categories

#Engineered

#Industrial

#Oil reservoir

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5558]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5558]	Petrotoga mexicana 16S ribosomal RNA gene, partial sequence	AY125964	1504	GenBank ENA	204046 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Petrotoga mexicana DSM 14811	GCA_002895565	contig	GenBank ENA	1122954 tax ID	*
[Ref.: #66792]	Petrotoga mexicana DSM 14811	1122954.3	wgs	PATRIC	1122954 tax ID	*

[Ref.: #5558]

GC-content

36.1 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Petrotoga mexicana DSM 14811 PATRIC: 1122954.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	98	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Petrotoga mexicana DSM 14811 PATRIC: 1122954.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	70.769	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	89.285	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	83.628	yes
[Ref.: #69480]	aerobic	aerobicⓘ	no	97.691	no
[Ref.: #69480]	thermophilic	thermophileⓘ	yes	68.858	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	57.99	no

Availability in culture collections External links

[Ref.: #5558]

Culture collection no.

DSM 14811, CIP 107371, MET met12, MET 12

[Ref.: #86048]

SI-ID 97647

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Petrotoga mexicana sp. nov., a novel thermophilic, anaerobic and xylanolytic bacterium isolated from an oil-producing well in the Gulf of Mexico.	Miranda-Tello E, Fardeau ML, Thomas P, Ramirez F, Casalot L, Cayol JL, Garcia JL, Ollivier B	Int J Syst Evol Microbiol	10.1099/ijs.0.02702-0	2004	*

References

#5558

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14811

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29933

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26304 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86048

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID97647.1 )

#26304

IJSEM 169 2004 ( DOI 10.1099/ijs.0.02702-0 , PubMed 14742476 )

* These data were automatically processed and therefore are not curated

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