Name: Petrotoga miotherma 42-6
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 17047

Type strain:

Species: Petrotoga miotherma

Strain Designation: 42-6

Culture col. no.: DSM 10691, ATCC 51224

Strain history: <- T. Lien <- ATCC <- M. E. Davey, strain 42-6

NCBI tax ID(s): 1434326 (strain), 28237 (species)

SI-ID 42867

ATCC 51224, DSM 10691

Special Collections

DSMZ

Section

Petrotoga miotherma 42-6 is an anaerobe, Gram-negative bacterium that was isolated from oilfield brine.

Gram-negative
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Thermotogota*
	Class	*Thermotogae*
	Order	*Petrotogales*
	Family	*Petrotogaceae*
	Genus	*Petrotoga*
	Species	**Petrotoga miotherma**
	Full Scientific Name (LPSN)	Petrotoga miotherma Davey et al. 1993

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4039]

Culture medium

PETROTOGA MEDIUM (DSMZ Medium 718)

[Ref.: #4039]

Culture medium growth

[Ref.: #4039]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4039]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #4039]			growth	55 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #4039]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %91.164

[Ref.: #69481]

Ability of spore formation

no Confidence in %95

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4039]	Sample type/isolated from	oilfield brine
[Ref.: #4039]	Geographic location (country and/or sea, region)	Oklahoma
[Ref.: #4039]	Country	USA
[Ref.: #4039]	Country ISO 3 Code	USA
[Ref.: #4039]	Continent	North America
* marker position based on {}

Isolation sources categories

#Engineered	#Industrial	#Oil reservoir
#Condition	#Saline	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FR733705 (>99% sequence identity) for Petrotoga from Microbeatlas

Aquatic Samples	87
Soil Samples	7
Animal Samples	10
Plant Samples
Total Samples	104

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4039]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #4039]	Petrotoga miotherma partial 16S rRNA gene, type strain DSM10691T	FR733705	1499	GenBank ENA	28237 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Petrotoga miotherma DSM 10691	GCA_002895605	contig	GenBank ENA	1434326 tax ID	*
[Ref.: #66792]	Petrotoga miotherma DSM 10691	1434326.3	wgs	PATRIC	1434326 tax ID	*

[Ref.: #4039]

GC-content

39.8 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Petrotoga miotherma DSM 10691 PATRIC: 1434326.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	95	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Petrotoga miotherma DSM 10691 PATRIC: 1434326.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	70.656	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	91.164	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	77.369	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	96.334	no
[Ref.: #69480]	thermophilic	thermophileⓘ	yes	67.964	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	55.748	no

Availability in culture collections External links

[Ref.: #4039]

Culture collection no.

DSM 10691, ATCC 51224

[Ref.: #86047]

SI-ID 42867

References

#4039

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 10691

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86047

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID42867.1 )

* These data were automatically processed and therefore are not curated

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Petrotoga miotherma DSM 10691

Petrotoga miotherma DSM 10691

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