Bifidobacterium bifidum Ti | Type strain | DSM 20456, ATCC 29521, JCM 1255

Strain identifier

BacDive ID: 1693

Type strain:

Species: Bifidobacterium bifidum

Strain Designation: Ti

Culture col. no.: DSM 20456, ATCC 29521, JCM 1255

Strain history: <- T. Mitsuoka <- Tissier, Ti

Section

Name and taxonomic classification
Culture and growth conditions
Physiology and metabolism
Isolation, sampling and environmental information
Safety information
Sequence information

External links

Bifidobacterium bifidum Ti is an anaerobe, mesophilic bacterium that was isolated from stool of breast-fed infant.

anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification.Name and taxonomic classification

	Last LPSN update	23-11-2020 (DD-MM-YYYY)
	Domain	Bacteria
	Phylum	Actinobacteria
	Class	Actinobacteria
	Order	Bifidobacteriales
	Family	Bifidobacteriaceae
	Genus	Bifidobacterium
	Species	Bifidobacterium bifidum
	Full Scientific Name (PNU)	Bifidobacterium bifidum (Tissier 1900) Orla-Jensen 1924 (Approved Lists 1980)

	Synonym	Bacterium bifidum
	Synonym	Bacillus bifidus

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #8828]

Culture medium

BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58), anaerobic

[Ref.: #8828]

Culture medium growth

[Ref.: #8828]

Culture medium link

medium recipe provided by DSMZ

[Ref.: #35445]

Culture medium

MEDIUM 20 - for Anaerobic bacteria

[Ref.: #35445]

Culture medium growth

[Ref.: #35445]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #8828]			growth	37 ̊C
[Ref.: #35445]			growth	37 ̊C

[Ref.: #8828]	Temperature range	mesophilic
[Ref.: #35445]	Temperature range	mesophilic

Information on physiology and metabolismPhysiology and metabolism

[Ref.: #8828]

Oxygen tolerance

anaerobe

[Ref.: #8828]	Murein short key	A21.07
[Ref.: #8828]	Murein types	A4ß L-Orn-D-Ser-D-Asp

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #8828]	5961	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+
[Ref.: #8828]	5960	-	-	-	-	-	-	-	-	-	-	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
[Ref.: #8828]	5959	-	-	-	-	-	-	-	-	-	-	+	+	+	+/-	+/-	-	-	-	-	-	-	-	-	-	-	+	-	-	+/-	+	+	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
[Ref.: #8828]	5958	-	-	-	-	-	-	-	-	-	-	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
[Ref.: #8828]	5957	-	-	-	-	-	-	-	-	-	-	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
[Ref.: #8828]	5956	-	-	-	-	-	-	-	-	-	-	+/-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+/-

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #8828]

Sample type/isolated from

stool of breast-fed infant

Isolation sources categories

#Host	#Human	#Child
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsSafety information

[Ref.: #8828]

Biosafety level

Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassSequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Bifidobacterium bifidum (ATCC 29521) 16S ribosomal RNA gene, partial	M84777	642	ENA	1681 tax ID	*
[Ref.: #20218]	Bifidobacterium bifidum DSM 20456 16S ribosomal RNA gene, partial sequence	HM007578	1344	ENA	500634 tax ID	*
[Ref.: #20218]	Bifidobacterium bifidum DSM 20456 = JCM 1255 16S ribosomal RNA gene and 16S-23S ribosomal RNA intergenic spacer, partial sequence	JQ347252	742	ENA	500634 tax ID	*
[Ref.: #20218]	16S rRNA [Bifidobacterium bifidum, DSM 20456T, Genomic, 1532 nt]	S83624	1532	ENA	1681 tax ID	*
[Ref.: #20218]	Bifidobacterium bifidum gene for 16S rRNA, partial sequence, strain: JCM 1255	AB116283	477	ENA	500634 tax ID	*
[Ref.: #20218]	Bifidobacterium bifidum gene for 16S rRNA, partial sequence, strain: JCM 1255	AB507078	668	ENA	500634 tax ID	*
[Ref.: #20218]	Bifidobacterium bifidum strain KCTC 3202 16S ribosomal RNA gene, partial sequence	GU361813	1480	ENA	1681 tax ID	*
[Ref.: #20218]	Bifidobacterium bifidum strain KCTC 3202 16S ribosomal RNA gene, partial sequence	U25951	1488	ENA	1681 tax ID	*
[Ref.: #20218]	Bifidobacterium bifidum KCTC 3202 16S rRNA gene	U25952	1488	ENA	1681 tax ID	*
[Ref.: #20218]	Bifidobacterium bifidum gene for 16S rRNA, partial sequence, strain: NBRC 100015	AB681129	1453	ENA	1681 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456	GCA_001025135	complete	GenBank	500634 tax ID	*
[Ref.: #66792]	Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456	GCA_000771485	contig	GenBank	500634 tax ID	*
[Ref.: #66792]	Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456	GCA_000466525	scaffold	GenBank	500634 tax ID	*
[Ref.: #66792]	Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456 Bifidobacterium_bifidum_MC1	GCA_901212485	scaffold	GenBank	500634 tax ID	*
[Ref.: #66792]	Bifidobacterium bifidum ATCC 29521 = JCM 1255	500634.3	wgs	PATRIC	500634 tax ID	*
[Ref.: #66792]	Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456	500634.6	complete	PATRIC	500634 tax ID	*
[Ref.: #66792]	Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456	500634.4	wgs	PATRIC	500634 tax ID	*
[Ref.: #66792]	Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456 strain Bifidobacterium_bifidum_MC1	500634.12	wgs	PATRIC	500634 tax ID	*

Availability in culture collectionsExternal links

[Ref.: #8828]

Culture collection no.

DSM 20456, ATCC 29521, JCM 1255

[Ref.: #20218]

Associated Passport(s) in StrainInfo

5383, 5377, 5385

References

#8828

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20456

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#35445 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These References are textmined

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