Bifidobacterium bifidum (DSM 20456, ATCC 29521, JCM 1255)

Name: Bifidobacterium bifidum (DSM 20456, ATCC 29521, JCM 1255)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 1693

Type strain

Strain Designation Ti, Tissier

Culture col. no. DSM 20456 ATCC 29521 JCM 1255 Ti VTT E-97795 21 more

NCBI tax ID(s) 500634 1681

Special Collections DSMZ CCUG JCM KCTC CIP

Links

Bifidobacterium bifidum Ti is an anaerobe, mesophilic, Gram-positive prokaryote that was isolated from stool of breast-fed infant.

Gram-positive rod-shaped anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 1238

LMG 8810,ATCC 29521,CCRC 11845,CCUG 18364,CECT 870,DSM 20456,IFO 14252,JCM 1255,LMG 10496,LMG 11041,NCFB 2715,LMG 13199,LMG 13210,NBIMCC 8744,CCUG 45217,NCDO 2715,CCRC 14615,NCIMB 702715,KCTC 3202,AS 1.2212,KCTC 3281,NBRC 100015,NBRC 14252,NCTC 13001,BCRC 11845,BCRC 14615,HAMBI 1380,NCAIM B.02021,NRRL B-41410,CGMCC 1.2212,VTT E-97795,CIP 56.7

@ref 20215

Last LPSN update 2025-12-16 09:47:10

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Bifidobacteriales

Family Bifidobacteriaceae

Genus Bifidobacterium

Species Bifidobacterium bifidum

Full scientific name Bifidobacterium bifidum (Tissier 1900) Orla-Jensen 1924 (Approved Lists 1980)

Synonyms (2)

"Bacillus bifidus"
"Bacterium bifidum"

BacDive ID	Other strains from **Bifidobacterium bifidum** (23)	Type strain
1690	B. bifidum Hl 3, DSM 20215
1691	B. bifidum E319f (Variant a), 319f, DSM 20082, JCM 1254, ...
1692	B. bifidum 212A, DSM 20239, ATCC 11863, JCM 1209, NCDO ...
137143	B. bifidum S28a, CIP 64.65, ATCC 15696, NCDO 2203, CCUG ...
138906	B. bifidum Am, CIP 63.78, ATCC 11618
144562	B. bifidum CCUG 25687
151330	B. bifidum CCUG 43775
151925	B. bifidum CCUG 45218, CIP 64.64
155871	B. bifidum CCUG 59492
162513	B. bifidum JCM 19472
162514	B. bifidum JCM 19473
162515	B. bifidum JCM 19474
162516	B. bifidum JCM 19475
162518	B. bifidum JCM 19477
162519	B. bifidum JCM 19478
162520	B. bifidum JCM 19479
162522	B. bifidum JCM 19481
162523	B. bifidum JCM 19482
162524	B. bifidum JCM 19483
162525	B. bifidum JCM 19484
165447	B. bifidum JCM 7002
165448	B. bifidum JCM 7003
174364	B. bifidum HUN437, Calf96, DSM 115838

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility	Confidence
116806	positive	rod-shaped
125438				93

Colony morphology

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
8828	BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58)	Medium recipe at MediaDive	Name: BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58) Composition: Glucose 10.0 g/l Casein peptone 10.0 g/l Bacto Soytone 5.0 g/l Meat extract 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l MnSO4 x H2O 0.05 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Tween 80 Resazurin Distilled water
35445	MEDIUM 20 - for Anaerobic bacteria		Agar (15.000 g);Glucose (5.000 g);Yeast extract (20.000 g);Tryptone (30.000 g);Cysteine hydrochloride (0.500 g);distilled water (1000.000 ml);Hemin solution -M00149 (25.000 ml)
116806	CIP Medium 20	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
8828	positive	growth	37	mesophilic
35445	positive	growth	37	mesophilic
67770	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
8828	anaerobe
116806	anaerobe

Spore formation

@ref	Spore formation	Confidence
125439		94.9

Murein

@ref	Murein short key	Type
8828	A21.07	A4ß L-Orn-D-Ser-D-Asp

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
116806	17057 ChEBI	cellobiose	-	degradation
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
116806	17108 ChEBI	D-arabinose	-	degradation
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
116806	15824 ChEBI	D-fructose	+	degradation
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
116806	17634 ChEBI	D-glucose	+	degradation
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	-	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
116806	65327 ChEBI	D-xylose	-	degradation
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
116806	4853 ChEBI	esculin	-	hydrolysis
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
116806	17716 ChEBI	lactose	+	degradation
116806	17306 ChEBI	maltose	-	degradation
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	-	builds acid from	from API 50CH acid
116806	17632 ChEBI	nitrate	-	reduction
116806	16301 ChEBI	nitrite	-	reduction
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
116806	17814 ChEBI	salicin	-	degradation
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
116806	17992 ChEBI	sucrose	+	degradation
68371	27082 ChEBI	trehalose	-	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Antibiotic resistance

@ref	ChEBI	Metabolite	Is antibiotic	Is sensitive	Is resistant
116806	6909	metronidazole

Metabolite production

@ref	Chebi-ID	Metabolite	Production
116806	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	+	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
116806	amylase	+
68382	beta-galactosidase	+	3.2.1.23	from API zym
116806	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
116806	caseinase	+	3.4.21.50
116806	catalase	-	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
116806	DNase	-
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	-		from API zym
116806	gelatinase	-
116806	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
116806	lipase	-
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
116806	oxidase	-
116806	protease	-
68382	trypsin	-	3.4.21.4	from API zym
116806	tween esterase	-
116806	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
116806	-	-	-	-	-	+	-	-	-	-	-	-	+	+	-	+	-	+	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
8828	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+
8828	-	-	-	-	-	-	-	-	-	-	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
8828	-	-	-	-	-	-	-	-	-	-	+	+	+	+/-	+/-	-	-	-	-	-	-	-	-	-	-	+	-	-	+/-	+	+	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
8828	-	-	-	-	-	-	-	-	-	-	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
8828	-	-	-	-	-	-	-	-	-	-	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
8828	-	-	-	-	-	-	-	-	-	-	+/-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+/-
116806	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+/-	-	-	-	-	-	-	+/-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
116806	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	#Child
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

Isolation

@ref	Sample type
8828	stool of breast-fed infant
67770	Feces of a breast-fed infant
116806	Human, Child, feces

Taxonmaps

69479

Global distribution of 16S sequence U25952 (>99% sequence identity) for Bifidobacterium bifidum subclade from Microbeatlas

Aquatic Samples	6270
Soil Samples	1947
Animal Samples	178528
Plant Samples	742
Total Samples	187487

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
8828	1	Risk group (German classification) According to TRBA 466
116806	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM102513v1 assembly for Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456	complete	GCA_001025135	500634.6	2848061456	500634	98.5
66792	48450_G02 assembly for Bifidobacterium bifidum NCTC13001	complete	GCA_900637095	1681.149	8117993186	1681	98.26
67770	Bifbif assembly for Bifidobacterium bifidum LMG 11041	contig	GCA_000741085	1681.23	2597490229	1681	78.19
67770	DSM-20456 assembly for Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456	contig	GCA_000771485	500634.4	2700989374	500634	68.91
67770	ASM46652v1 assembly for Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456	scaffold	GCA_000466525	500634.3	2541047090	500634	68.08
66792	NZ_Bifidobacterium_bifidum_MC1 assembly for Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456	scaffold	GCA_901212485	500634.12	8119569245	500634	55.58

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Bifidobacterium bifidum (ATCC 29521) 16S ribosomal RNA gene, partial	M84777	642	1681
20218	Bifidobacterium bifidum DSM 20456 16S ribosomal RNA gene, partial sequence	HM007578	1344	500634
20218	Bifidobacterium bifidum DSM 20456 = JCM 1255 16S ribosomal RNA gene and 16S-23S ribosomal RNA intergenic spacer, partial sequence	JQ347252	742	500634
20218	16S rRNA [Bifidobacterium bifidum, DSM 20456T, Genomic, 1532 nt]	S83624	1532	1681
20218	Bifidobacterium bifidum gene for 16S rRNA, partial sequence, strain: JCM 1255	AB116283	477	500634
20218	Bifidobacterium bifidum gene for 16S rRNA, partial sequence, strain: JCM 1255	AB507078	668	500634
20218	Bifidobacterium bifidum strain KCTC 3202 16S ribosomal RNA gene, partial sequence	GU361813	1480	1681
20218	Bifidobacterium bifidum strain KCTC 3202 16S ribosomal RNA gene, partial sequence	U25951	1488	1681
20218	Bifidobacterium bifidum KCTC 3202 16S rRNA gene	U25952	1488	1681
20218	Bifidobacterium bifidum gene for 16S rRNA, partial sequence, strain: NBRC 100015	AB681129	1453	1681
67770	Bifidobacterium bifidum gene for 16S ribosomal RNA, partial sequence	AB437356	1519	1681
67770	B.bifidum small subunit ribosomal RNA gene	M38018	1532	500634
124043	Bifidobacterium bifidum gene for 16S ribosomal RNA, partial sequence, strain: JCM 1255.	LC071804	1422	500634

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Bifidobacterium bifidum NCTC13001
NCBI: GCA_900637095

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	94.90	no
125439	motility	BacteriaNetⓘ	no	51.80	no
125439	gram_stain	BacteriaNetⓘ	positive	78.20	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	76.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456 JCM 1255
NCBI: GCA_001025135.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	86.12	no
125438	anaerobic	anaerobicⓘ	yes	77.39	no
125438	aerobic	aerobicⓘ	no	91.03	no
125438	spore-forming	spore-formingⓘ	no	87.82	no
125438	thermophilic	thermophileⓘ	no	94.97	yes
125438	flagellated	motile2+ⓘ	no	93.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Quantitative Analysis of Lactobionic Acid in Bioreactor Cultures and Selected Biological Activities.	Goderska K, Juzwa W, Karpinski TM.	Molecules	10.3390/molecules29225400	2024
	Evaluation of alginate-based coatings enriched with postbiotics from Bifidobacterium spp. on the quality and safety of Turkey meat.	Kaynakci EC.	Sci Rep	10.1038/s41598-025-09913-z	2025
	Probiotic Bifidobacterium bifidum strains desialylate MUC13 and increase intestinal epithelial barrier function.	Segui-Perez C, Huang LZX, Paganelli FL, Lievens E, Strijbis K.	Sci Rep	10.1038/s41598-025-92125-2	2025
	Uncovering the Probiotic Supplement Landscape: Market Offerings, Sales Patterns, and Future Forecasts Using Machine Learning Approach - A Case Study of Montenegro.	Andela M, Ivan M, Mora D, Arioli S.	Probiotics Antimicrob Proteins	10.1007/s12602-024-10400-6	2025
	Viability-PCR for the selective detection of Lactobacillus acidophilus and Bifidobacterium bifidum in live bacteria-containing products.	Catone S, Iannantuono S, Genovese D, Von Hunolstein C, Franciosa G.	Front Microbiol	10.3389/fmicb.2024.1400529	2024
Metabolism	The antioxidant and prebiotic properties of lactobionic acid.	Goderska K.	Appl Microbiol Biotechnol	10.1007/s00253-019-09754-7	2019
	Emerging perspectives in the gut-muscle axis: The gut microbiota and its metabolites as important modulators of meat quality.	Wen C, Wang Q, Gu S, Jin J, Yang N.	Microb Biotechnol	10.1111/1751-7915.14361	2024
	Growth of Bifidobacterium species is inhibited by free fatty acids and bile salts but not by glycerides.	Perez-Burillo S, Rajakaruna S, Paliy O.	AIMS Microbiol	10.3934/microbiol.2022005	2022
	Probiotics in Experimental Ulcerative Colitis: Mast Cell Density and Neuronal Hypertrophy.	Hizay A, Keles Celik N, Acar N, Comak Gocer EM, Sekerci R, Oz N, Golal E, Elpek GO.	Turk J Gastroenterol	10.5152/tjg.2022.21550	2022
Metabolism	Structural Identity of Galactooligosaccharide Molecules Selectively Utilized by Single Cultures of Probiotic Bacterial Strains.	Boger M, van Leeuwen SS, Lammerts van Bueren A, Dijkhuizen L.	J Agric Food Chem	10.1021/acs.jafc.9b05968	2019
	Bifidobacterium beta-Glucosidase Activity and Fermentation of Dietary Plant Glucosides Is Species and Strain Specific.	Modrackova N, Vlkova E, Tejnecky V, Schwab C, Neuzil-Bunesova V.	Microorganisms	10.3390/microorganisms8060839	2020
	Prebiotic Potential of a New Sweetener Based on Galactooligosaccharides and Modified Mogrosides.	Munoz-Labrador A, Lebron-Aguilar R, Quintanilla-Lopez JE, Galindo-Iranzo P, Azcarate SM, Kolida S, Kachrimanidou V, Garcia-Canas V, Methven L, Rastall RA, Moreno FJ, Hernandez-Hernandez O.	J Agric Food Chem	10.1021/acs.jafc.2c01363	2022
	Fermented Oats as a Novel Functional Food.	Djorgbenoo R, Hu J, Hu C, Sang S.	Nutrients	10.3390/nu15163521	2023
	A novel pathway of levodopa metabolism by commensal Bifidobacteria.	Cirstea MS, Creus-Cuadros A, Lo C, Yu AC, Serapio-Palacios A, Neilson S, Appel-Cresswell S, Finlay BB.	Sci Rep	10.1038/s41598-023-45953-z	2023
Pathogenicity	Effect of the standard herbal preparation, STW5, treatment on dysbiosis induced by dextran sodium sulfate in experimental colitis.	Mohamed SS, Abdeltawab NF, Wadie W, Ahmed LA, Ammar RM, Rabini S, Abdel-Aziz H, Khayyal MT.	BMC Complement Med Ther	10.1186/s12906-021-03337-8	2021
Enzymology	A new insight into the physiological role of bile salt hydrolase among intestinal bacteria from the genus Bifidobacterium.	Jarocki P, Podlesny M, Glibowski P, Targonski Z.	PLoS One	10.1371/journal.pone.0114379	2014
Genetics	A genomic perspective on the potential of termite-associated Cellulosimicrobium cellulans MP1 as producer of plant biomass-acting enzymes and exopolysaccharides.	Vu NT, Quach TN, Dao XT, Le HT, Le CP, Nguyen LT, Le LT, Ngo CC, Hoang H, Chu HH, Phi QT.	PeerJ	10.7717/peerj.11839	2021
Enzymology	Genetic diversity of bile salt hydrolases among human intestinal bifidobacteria.	Jarocki P, Targonski Z.	Curr Microbiol	10.1007/s00284-013-0362-1	2013
	Quantitative Detection of Bifidobacterium longum Strains in Feces Using Strain-Specific Primers.	Xiao Y, Wang C, Zhao J, Zhang H, Chen W, Zhai Q.	Microorganisms	10.3390/microorganisms9061159	2021
	The effect of yogurt culture on the survival of probiotic bacteria in oat-based, non-dairy products	Martensson O, Oste R, Holst O.	Food Res Int	10.1016/s0963-9969(02)00074-1	2002
	Correlating Infant Fecal Microbiota Composition and Human Milk Oligosaccharide Consumption by Microbiota of 1-Month-Old Breastfed Infants.	Borewicz K, Gu F, Saccenti E, Arts ICW, Penders J, Thijs C, van Leeuwen SS, Lindner C, Nauta A, van Leusen E, Schols HA, Smidt H.	Mol Nutr Food Res	10.1002/mnfr.201801214	2019
Metabolism	Fucosyllactose and L-fucose utilization of infant Bifidobacterium longum and Bifidobacterium kashiwanohense.	Bunesova V, Lacroix C, Schwab C.	BMC Microbiol	10.1186/s12866-016-0867-4	2016
Metabolism	Hydrolytic fate of deoxynivalenol-3-glucoside during digestion.	Berthiller F, Krska R, Domig KJ, Kneifel W, Juge N, Schuhmacher R, Adam G.	Toxicol Lett	10.1016/j.toxlet.2011.08.006	2011
Cultivation	A new selective medium for Bifidobacterium spp.	Nebra Y, Blanch AR.	Appl Environ Microbiol	10.1128/aem.65.11.5173-5176.1999	1999
	Characterization of GH2 and GH42 beta-galactosidases derived from bifidobacterial infant isolates.	Ambrogi V, Bottacini F, O'Sullivan J, O'Connell Motherway M, Linqiu C, Schoemaker B, Schoterman M, van Sinderen D.	AMB Express	10.1186/s13568-019-0735-3	2019
Metabolism	Bifidobacterium species associated with breastfeeding produce aromatic lactic acids in the infant gut.	Laursen MF, Sakanaka M, von Burg N, Morbe U, Andersen D, Moll JM, Pekmez CT, Rivollier A, Michaelsen KF, Molgaard C, Lind MV, Dragsted LO, Katayama T, Frandsen HL, Vinggaard AM, Bahl MI, Brix S, Agace W, Licht TR, Roager HM.	Nat Microbiol	10.1038/s41564-021-00970-4	2021
Pathogenicity	Inhibitory activity spectrum of reuterin produced by Lactobacillus reuteri against intestinal bacteria.	Cleusix V, Lacroix C, Vollenweider S, Duboux M, Le Blay G.	BMC Microbiol	10.1186/1471-2180-7-101	2007
	Trophic Interactions of Infant Bifidobacteria and Eubacterium hallii during L-Fucose and Fucosyllactose Degradation.	Schwab C, Ruscheweyh HJ, Bunesova V, Pham VT, Beerenwinkel N, Lacroix C.	Front Microbiol	10.3389/fmicb.2017.00095	2017
Metabolism	Two routes of metabolic cross-feeding between Bifidobacterium adolescentis and butyrate-producing anaerobes from the human gut.	Belenguer A, Duncan SH, Calder AG, Holtrop G, Louis P, Lobley GE, Flint HJ.	Appl Environ Microbiol	10.1128/aem.72.5.3593-3599.2006	2006
Enzymology	Identification, detection, and enumeration of human bifidobacterium species by PCR targeting the transaldolase gene.	Requena T, Burton J, Matsuki T, Munro K, Simon MA, Tanaka R, Watanabe K, Tannock GW.	Appl Environ Microbiol	10.1128/aem.68.5.2420-2427.2002	2002
	Mucin glycan foraging in the human gut microbiome.	Tailford LE, Crost EH, Kavanaugh D, Juge N.	Front Genet	10.3389/fgene.2015.00081	2015
Enzymology	Actinomycetes for marine drug discovery isolated from mangrove soils and plants in China.	Hong K, Gao AH, Xie QY, Gao H, Zhuang L, Lin HP, Yu HP, Li J, Yao XS, Goodfellow M, Ruan JS.	Mar Drugs	10.3390/md7010024	2009
	In Vitro Probiotic Modulation of Specific Dietary Complex Sugar Consumption in Fecal Cultures in Infants.	Mollova D, Baev V, Iliev I.	Microorganisms	10.3390/microorganisms13102352	2025
	The Effect of Probiotics on Gut Microbiota Modulation and Its Role in Mitigating Diabetes-Induced Hepatic Damage in Wistar Rats.	Qumsani AT.	Biology (Basel)	10.3390/biology14040323	2025
	Development of Chitosan-Polyacrylic Acid Complex Systems for Enhanced Oral Delivery of Lactobacillus Gasseri and Bifidobacterium Bifidum Probiotics.	Al-Fawares O, Alshweiat A, Abuawad A.	Drug Des Devel Ther	10.2147/dddt.s478925	2025
	Maillard reaction products from Tilapia (Oreochromis mossambicus) scale collagen peptides conjugated with Galactooligosaccharides of different purities: Characterization, antioxidant activity, and impact on the growth of probiotics.	Liu Z, Chen B, Wang S, Xiao Z, Guo H, Wang Z, Qi X, Dong S, Zhao Z.	Food Chem X	10.1016/j.fochx.2025.102733	2025
Genetics	Highly accurate prophage island detection with PIDE.	Gao H, Li B, Guo Z, Zheng L, Chen J, Liang G.	Genome Biol	10.1186/s13059-025-03733-0	2025
	Evaluation of the Effect of Probiotic Supplementation on Intestinal Barrier Integrity and Epithelial Damage in Colitis Disease: A Systematic Review.	Sivri D, Seref B, Sare Bulut M, Gezmen Karadag M.	Nutr Rev	10.1093/nutrit/nuae180	2025
	Facile and efficient chemical synthesis of gluco-oligosaccharides (GlcOS) with diverse glycosidic linkages as potential prebiotics to promote the growth of probiotic bacteria	Zeng M, Li N, Astmann T, Oh JH, van Pijkeren JP, Pan X.	Food Research International.		2023
Pathogenicity	Metabiotic extracted from Bifidobacterium bifidum modulates antioxidant capacity and inflammatory responses during peptic ulcer healing in male wistar rats: a preliminary study.	Almasyan R, Jafari P, Farjanikish G, Noorbazargan H.	Iran J Microbiol	10.18502/ijm.v15i1.11924	2023
	US/MR Bimodal Imaging-Guided Bio-Targeting Synergistic Agent for Tumor Therapy.	Jiang F, Wang L, Tang Y, Wang Y, Li N, Wang D, Zhang Z, Lin L, Du Y, Ou X, Zou J.	Int J Nanomedicine	10.2147/ijn.s363645	2022
	Evaluation of MENAQUINONE-7 and fat-soluble vitamin production by starter cultures during fermentation in dairy products using RPLC method.	Altuncu V, Kaymaz A, Ertekin Filiz B, Cubuk Demiralay E, Kok Tas T.	Food Sci Nutr	10.1002/fsn3.4474	2024
	Facile and efficient chemical synthesis of gluco-oligosaccharides (GlcOS) with diverse glycosidic linkages as potential prebiotics to promote the growth of probiotic bacteria.	Zeng M, Li N, Astmann T, Oh JH, van Pijkeren JP, Pan X.	Food Res Int	10.1016/j.foodres.2022.112436	2023
	Assessment of the bifidogenic and antibacterial activities of xylooligosaccharide.	Sun Z, Yue Z, Liu E, Li X, Li C.	Front Nutr	10.3389/fnut.2022.858949	2022
	Probiotic Microorganisms in Inflammatory Bowel Diseases: Live Biotherapeutics as Food.	Santos EN, Magalhaes-Guedes KT, Borges FEM, Ferreira DD, da Silva DF, Conceicao PCG, Lima AKC, Cardoso LG, Umsza-Guez MA, Ramos CL.	Foods	10.3390/foods13244097	2024
	Generation of novel prebiotic oligosaccharide pools from fiber drives biological insight in bacterial glycan metabolism.	Masarweh C, Maldonado-Gomez M, Paviani B, Bhattacharya M, Weng C-Y, Suarez C, Ehlers-Cheang S, Stacy A, Castillo J, Krishnakumar N, Kalanetra KA, Barile D, German JB, Lebrilla CB, Mills DA.	Appl Environ Microbiol	10.1128/aem.02077-24	2025
	Sustained in-ovo and in-feed probiotic supplementation promotes embryo development and post-hatch performance in broilers.	Ren Y, Muyyarikkandy MS, Gao M, Lu S, Reddyvari R, Mathew E, Kuttappan D, Kosuri P, Amalaradjou MA.	Poult Sci	10.1016/j.psj.2025.105395	2025
	Bacterial metabolites influence the autofluorescence of Clostridioides difficile.	Ticer TD, Tingler AM, Glover JS, Dooley SA, Kendrick J, Zackular JP, Devkota S, Wu GD, Mahalak K, Engevik A, Engevik MA.	Front Microbiol	10.3389/fmicb.2024.1459795	2024
	Inhibitory effects of postbiotic consisting sonication-killed Bifidobacterium bifidum on experimental triple negative breast neoplasm in mice: a preliminary study.	Nazari F, Jafari P, Nomanpour B, Varmira K, Raissi F.	Iran J Microbiol	10.18502/ijm.v14i5.10964	2022
	Unveiling the impact of SUMOylation at K298 site of heat shock factor 1 on glioblastoma malignant progression.	Li X, Wang Z, Gao B, Dai K, Wu J, Shen K, Li G, Niu X, Wu X, Li L, Shen H, Li H, Yu Z, Wang Z, Chen G.	Neoplasia	10.1016/j.neo.2024.101055	2024
	Production and characterization of nondairy gluten-free fermented beverage based on buckwheat and lentil.	Mousavi MH, Gharekhani M, Alirezalu K, Roufegarinejad L, Azadmard-Damirchi S.	Food Sci Nutr	10.1002/fsn3.3095	2023
	Postbiotics against Pathogens Commonly Involved in Pediatric Infectious Diseases.	Mantziari A, Salminen S, Szajewska H, Malagon-Rojas JN.	Microorganisms	10.3390/microorganisms8101510	2020
	Antioxidant Therapy in Inflammatory Bowel Diseases: How Far Have We Come and How Close Are We?	Xavier LEMDS, Reis TCG, Martins ASDP, Santos JCF, Bueno NB, Goulart MOF, Moura FA.	Antioxidants (Basel)	10.3390/antiox13111369	2024
	Characterizing the mucin-degrading capacity of the human gut microbiota.	Glover JS, Ticer TD, Engevik MA.	Sci Rep	10.1038/s41598-022-11819-z	2022
	The Effect of Bifidobacterium Bifidum Supernatant and Cell Mass on the Proliferation Potential of Rat Bone Marrow-Derived Stromal Cells.	Saberian M, Shahidi Delshad E, Habibi M.	Iran J Med Sci	10.30476/ijms.2019.45772	2020
	Potential of jackfruit inner skin fibre for encapsulation of probiotics on their stability against adverse conditions.	Petsong K, Kaewthong P, Kingwascharapong P, Nilsuwan K, Karnjanapratum S, Tippayawat P.	Sci Rep	10.1038/s41598-023-38319-y	2023
Genetics	Viability and Composition Validation of Commercial Probiotic Products by Selective Culturing Combined with Next-Generation Sequencing.	Ullah M, Raza A, Ye L, Yu Z.	Microorganisms	10.3390/microorganisms7070188	2019
	Productive performance, fertility and hatchability, blood indices and gut microbial load in laying quails as affected by two types of probiotic bacteria.	Nour MA, El-Hindawy MM, Abou-Kassem DE, Ashour EA, Abd El-Hack ME, Mahgoub S, Aboelenin SM, Soliman MM, El-Tarabily KA, Abdel-Moneim AE.	Saudi J Biol Sci	10.1016/j.sjbs.2021.07.030	2021
	Optimization of Pectin Extraction from Melon Peel as a New Source of Pectin and Pectin Hydrolysate with Prebiotic Potential.	Bilraheem S, Srinuanpan S, Cheirsilp B, Upaichit A, Kawai F, Thumarat U.	Foods	10.3390/foods13162554	2024
	Significant difference in gut microbiota Bifidobacterium species but not Lactobacillus species in colorectal cancer patients in comparison with healthy volunteers using quantitative real-time PCR.	Esfandiari F, Bakhshi B, Shahbazi T, Derakhshan-Nezhad E, Bahroudi M, Minaeeian S, Boustanshenas M, Alborzi F, Behboudi B, Fazeli MS.	PLoS One	10.1371/journal.pone.0294053	2024
	Growth, carcass characteristics, meat quality, and microbial aspects of growing quail fed diets enriched with two different types of probiotics (Bacillus toyonensis and Bifidobacterium bifidum).	Abou-Kassem DE, Elsadek MF, Abdel-Moneim AE, Mahgoub SA, Elaraby GM, Taha AE, Elshafie MM, Alkhawtani DM, Abd El-Hack ME, Ashour EA.	Poult Sci	10.1016/j.psj.2020.04.019	2021
Pathogenicity	Exploring the role of IL-1beta in inflammatory bowel disease pathogenesis.	Aggeletopoulou I, Kalafateli M, Tsounis EP, Triantos C.	Front Med (Lausanne)	10.3389/fmed.2024.1307394	2024
	Materials Used for the Microencapsulation of Probiotic Bacteria in the Food Industry.	Kowalska E, Ziarno M, Ekielski A, Zelazinski T.	Molecules	10.3390/molecules27103321	2022
	Maternal Intake of Probiotics to Program Offspring Health.	Cuinat C, Stinson SE, Ward WE, Comelli EM.	Curr Nutr Rep	10.1007/s13668-022-00429-w	2022
	Releasing Bioactive Compounds from Brown Seaweed with Novel Cold-Adapted Alginate Lyase and Alcalase.	Jiang J, Jiang Z, Yan Q, Han S, Yang S.	Mar Drugs	10.3390/md21040208	2023
	Nitrogen-Doped Carbon Dots: A New Powerful Fluorescent Dye with Substantial Effect on Bacterial Cell Labeling.	Lee SJ, Zheng YY, Chen WM, Hsueh YH.	ACS Omega	10.1021/acsomega.4c04273	2024
	Probiotic butter: Stability, free fatty acid composition and some quality parameters during refrigerated storage	Erkaya T, Urkek B, Dogru U, Cetin B, Sengul M.	Int Dairy J	10.1016/j.idairyj.2015.04.011	2015
	Cyclovirobuxine D ameliorates cardiomyocyte senescence in diabetic cardiomyopathy mice by enhancing mitochondrial function via sirtuin 3-ATP5O signal axis.	An JF, Su H, Wang XT, Zhang GQ, Xiao CD, Wollenberga B, Chen YX, Yang H, Luo H, Yang L, Fu LY, Xu YN, Tao L, Shen XC.	Chin Med	10.1186/s13020-025-01254-3	2025
Pathogenicity	Effect of Probiotic Yogurt and Xylitol-Containing Chewing Gums on Salivary S Mutans Count.	Ghasemi E, Mazaheri R, Tahmourespour A.	J Clin Pediatr Dent	10.17796/1053-4628-41.4.257	2017
Genetics	MEGAnnotator2: a pipeline for the assembly and annotation of microbial genomes.	Lugli GA, Fontana F, Tarracchini C, Milani C, Mancabelli L, Turroni F, Ventura M.	Microbiome Res Rep	10.20517/mrr.2022.21	2023
	Featured Prebiotic Agent: The Roles and Mechanisms of Direct and Indirect Prebiotic Activities of Lactoferrin and Its Application in Disease Control.	Liu ZS, Chen PW.	Nutrients	10.3390/nu15122759	2023
	Enteric VIP-producing neurons maintain gut microbiota homeostasis through regulating epithelium fucosylation.	Lei C, Sun R, Xu G, Tan Y, Feng W, McClain CJ, Deng Z.	Cell Host Microbe	10.1016/j.chom.2022.09.001	2022
	Effects of Bifidobacterium bifidum in Mice Infected with Citrobacter rodentium.	Wen B, Taibi A, Villa CR, Lee SH, Sagaidak S, Comelli EM.	Microorganisms	10.3390/microorganisms7020051	2019
	In Vitro Antidiabetic, Antioxidant Activity, and Probiotic Activities of Lactiplantibacillus plantarum and Lacticaseibacillus paracasei Strains.	Won G, Choi SI, Park N, Kim JE, Kang CH, Kim GH.	Curr Microbiol	10.1007/s00284-021-02588-5	2021
	The Synergistic Effect of Quince Fruit and Probiotics (Lactobacillus and Bifidobacterium) on Reducing Oxidative Stress and Inflammation at the Intestinal Level and Improving Athletic Performance during Endurance Exercise.	Herrera-Rocha KM, Manjarrez-Juanes MM, Larrosa M, Barrios-Payan JA, Rocha-Guzman NE, Macias-Salas A, Gallegos-Infante JA, Alvarez SA, Gonzalez-Laredo RF, Moreno-Jimenez MR.	Nutrients	10.3390/nu15224764	2023
Metabolism	Commensal segmented filamentous bacteria-derived retinoic acid primes host defense to intestinal infection.	Woo V, Eshleman EM, Hashimoto-Hill S, Whitt J, Wu SE, Engleman L, Rice T, Karns R, Qualls JE, Haslam DB, Vallance BA, Alenghat T.	Cell Host Microbe	10.1016/j.chom.2021.09.010	2021
	The strategic role of biotics in dental caries prevention: A scoping review.	Banakar M, Fernandes GVO, Etemad-Moghadam S, Frankenberger R, Pourhajibagher M, Mehran M, Yazdi MH, Haghgoo R, Alaeddini M.	Food Sci Nutr	10.1002/fsn3.4473	2024
	Gut microbiota composition and type 2 diabetes: Are these subjects linked Together?	Razavi S, Amirmozafari N, Zahedi Bialvaei A, Navab-Moghadam F, Khamseh ME, Alaei-Shahmiri F, Sedighi M.	Heliyon	10.1016/j.heliyon.2024.e39464	2024
	Assessing probiotic viability in mixed species yogurt using a novel propidium monoazide (PMAxx)-quantitative PCR method.	Marole TA, Sibanda T, Buys EM.	Front Microbiol	10.3389/fmicb.2024.1325268	2024
	Synthetic microbial consortia for the treatment of Clostridioides difficile infection in mice model.	Liu J, Zhu W, Lessing DJ, Chu W.	Microb Biotechnol	10.1111/1751-7915.14333	2023
	Effects of Pine Pollen Polysaccharides and Sulfated Polysaccharides on Ulcerative Colitis in Mice by Regulating Th17/Treg.	Wang Z, Li Z, Wang H, Wu Q, Geng Y.	Foods	10.3390/foods13193183	2024
	A postbiotic consisting of heat-treated lactobacilli has a bifidogenic effect in pure culture and in human fermented faecal communities.	Warda AK, Clooney AG, Ryan F, de Almeida Bettio PH, Di Benedetto G, Ross RP, Hill C.	Appl Environ Microbiol	10.1128/aem.02459-20	2021
	How microbial glycosyl hydrolase activity in the gut mucosa initiates microbial cross-feeding.	Berkhout MD, Plugge CM, Belzer C.	Glycobiology	10.1093/glycob/cwab105	2022
Enzymology	Selection, Characterization and Interaction Studies of a DNA Aptamer for the Detection of Bifidobacterium bifidum.	Hu L, Wang L, Lu W, Zhao J, Zhang H, Chen W.	Int J Mol Sci	10.3390/ijms18050883	2017
	Survival of Lactobacillus casei, Lactobacillus plantarum and Bifidobacterium bifidum in free and microencapsulated forms on Iranian white cheese produced by ultrafiltration	ZOMORODI S, ASL AK, ROHANI SMR, MIRAGHAEI S.	International journal of dairy technology.	10.1111/j.1471-0307.2010.00638.x	2011
Pathogenicity	Gut microbiota, intestinal permeability, and systemic inflammation: a narrative review.	Di Vincenzo F, Del Gaudio A, Petito V, Lopetuso LR, Scaldaferri F.	Intern Emerg Med	10.1007/s11739-023-03374-w	2024
Pathogenicity	Alleviation Effects of Bifidobacterium animalis subsp. lactis XLTG11 on Dextran Sulfate Sodium-Induced Colitis in Mice.	Wang N, Wang S, Xu B, Liu F, Huo G, Li B.	Microorganisms	10.3390/microorganisms9102093	2021
	Fermentation of xylo-oligosaccharides obtained from wheat bran and Bengal gram husk by lactic acid bacteria and bifidobacteria.	Madhukumar MS, Muralikrishna G.	J Food Sci Technol	10.1007/s13197-010-0226-7	2012
	The Effects of Agave Fructans in a Functional Food Consumed by Patients with Irritable Bowel Syndrome with Constipation: A Randomized, Double-Blind, Placebo-Controlled Trial.	Camacho-Diaz BH, Arenas-Ocampo ML, Osorio-Diaz P, Jimenez-Aparicio AR, Alvarado-Jasso GM, Saavedra-Briones EV, Valdovinos-Diaz MA, Gomez-Reyes E.	Nutrients	10.3390/nu15163526	2023
	Prebiotic potential of Agave angustifolia Haw fructans with different degrees of polymerization.	Velazquez-Martinez JR, Gonzalez-Cervantes RM, Hernandez-Gallegos MA, Mendiola RC, Aparicio AR, Ocampo ML.	Molecules	10.3390/molecules190812660	2014
	Therapeutic effects of orally administration of viable and inactivated probiotic strains against murine urinary tract infection.	Van VTH, Liu ZS, Hsieh YJ, Shiu WC, Chen BY, Ku YW, Chen PW.	J Food Drug Anal	10.38212/2224-6614.3474	2023
Pathogenicity	Targeted discovery of gut microbiome-remodeling compounds for the treatment of systemic inflammatory response syndrome.	Liu L, Ma L, Liu H, Zhao F, Li P, Zhang J, Lu X, Zhao X, Yi Y.	mSystems	10.1128/msystems.00788-24	2024
Phylogeny	Identification of species belonging to the Bifidobacterium genus by PCR-RFLP analysis of a hsp60 gene fragment.	Baffoni L, Stenico V, Strahsburger E, Gaggia F, Di Gioia D, Modesto M, Mattarelli P, Biavati B.	BMC Microbiol	10.1186/1471-2180-13-149	2013
Metabolism	Unraveling the Leloir pathway of Bifidobacterium bifidum: significance of the uridylyltransferases.	De Bruyn F, Beauprez J, Maertens J, Soetaert W, De Mey M.	Appl Environ Microbiol	10.1128/aem.02460-13	2013
	Modified dietary fiber from cassava pulp affects the cecal microbial population, short-chain fatty acid, and ammonia production in broiler chickens.	Okrathok S, Sirisopapong M, Mermillod P, Khempaka S.	Poult Sci	10.1016/j.psj.2022.102265	2023
	Cell-Free Spent Media Obtained from Bifidobacterium bifidum and Bifidobacterium crudilactis Grown in Media Supplemented with 3'-Sialyllactose Modulate Virulence Gene Expression in Escherichia coli O157:H7 and Salmonella Typhimurium.	Bondue P, Crevecoeur S, Brose F, Daube G, Seghaye MC, Griffiths MW, LaPointe G, Delcenserie V.	Front Microbiol	10.3389/fmicb.2016.01460	2016
Genetics	The Integrated Probiotic Database: a genomic compendium of bifidobacterial health-promoting strains.	Tarracchini C, Viglioli M, Lugli GA, Mancabelli L, Fontana F, Alessandri G, Turroni F, Ventura M, Milani C.	Microbiome Res Rep	10.20517/mrr.2021.13	2022
	In Vitro Selective Growth-Inhibitory Activities of Phytochemicals, Synthetic Phytochemical Analogs, and Antibiotics against Diarrheagenic/Probiotic Bacteria and Cancer/Normal Intestinal Cells.	Kudera T, Doskocil I, Salmonova H, Petrtyl M, Skrivanova E, Kokoska L.	Pharmaceuticals (Basel)	10.3390/ph13090233	2020
	The interplay between probiotics and host autophagy: mechanisms of action and emerging insights.	Sadeghloo Z, Nabavi-Rad A, Zali MR, Klionsky DJ, Yadegar A.	Autophagy	10.1080/15548627.2024.2403277	2025
	The Tetracycline Resistance Gene, tet(W) in Bifidobacterium animalis subsp. lactis Follows Phylogeny and Differs From tet(W) in Other Species.	Nohr-Meldgaard K, Struve C, Ingmer H, Agerso Y.	Front Microbiol	10.3389/fmicb.2021.658943	2021
	Stronger gut microbiome modulatory effects by postbiotics than probiotics in a mouse colitis model.	Zhang T, Zhang W, Feng C, Kwok LY, He Q, Sun Z.	NPJ Sci Food	10.1038/s41538-022-00169-9	2022
	Friend or Foe? Impacts of Dietary Xylans, Xylooligosaccharides, and Xylanases on Intestinal Health and Growth Performance of Monogastric Animals.	Baker JT, Duarte ME, Holanda DM, Kim SW.	Animals (Basel)	10.3390/ani11030609	2021
	The Possibility of Using Sulphur Shelf Fungus (Laetiporus sulphureus) in the Food Industry and in Medicine-A Review.	Adamska I.	Foods	10.3390/foods12071539	2023
Pathogenicity	The botanical origin and antioxidant, anti-BACE1 and antiproliferative properties of bee pollen from different regions of South Korea.	Zou Y, Hu J, Huang W, Zhu L, Shao M, Dordoe C, Ahn YJ, Wang D, Zhao Y, Xiong Y, Wang X.	BMC Complement Med Ther	10.1186/s12906-020-03023-1	2020
	Progress in Probiotic Science: Prospects of Functional Probiotic-Based Foods and Beverages.	Abdul Manan M.	Int J Food Sci	10.1155/ijfo/5567567	2025
Metabolism	Bifidobacteria shape host neural circuits during postnatal development by promoting synapse formation and microglial function.	Luck B, Engevik MA, Ganesh BP, Lackey EP, Lin T, Balderas M, Major A, Runge J, Luna RA, Sillitoe RV, Versalovic J.	Sci Rep	10.1038/s41598-020-64173-3	2020
	Sheep's Butter and Correspondent Buttermilk Produced with Sweet Cream and Cream Fermented by Aromatic Starter, Kefir and Probiotic Culture.	Silva T, Pires A, Gomes D, Viegas J, Pereira-Dias S, Pintado ME, Henriques M, Pereira CD.	Foods	10.3390/foods12020331	2023
Metabolism	Gut commensals expand vitamin A metabolic capacity of the mammalian host.	Bonakdar M, Czuba LC, Han G, Zhong G, Luong H, Isoherranen N, Vaishnava S.	Cell Host Microbe	10.1016/j.chom.2022.06.011	2022
	Impact of Ag Nanoparticles (AgNPs) and Multimicrobial Preparation (EM) on the Carcass, Mineral, and Fatty Acid Composition of Cornu aspersum aspersum Snails.	Niemiec T, Lozicki A, Pietrasik R, Paweta S, Rygalo-Galewska A, Matusiewicz M, Zglinska K.	Animals (Basel)	10.3390/ani11071926	2021
	Prebiotic Activity of Purified Xylobiose Obtained from Ragi (Eleusine coracana, Indaf-15) Bran.	Manisseri C, Gudipati M.	Indian J Microbiol	10.1007/s12088-011-0176-4	2012
	Biomarkers and Utility of the Antioxidant Potential of Probiotic Lactobacilli and Bifidobacteria as Representatives of the Human Gut Microbiota.	Averina OV, Poluektova EU, Marsova MV, Danilenko VN.	Biomedicines	10.3390/biomedicines9101340	2021
	Autometa: automated extraction of microbial genomes from individual shotgun metagenomes.	Miller IJ, Rees ER, Ross J, Miller I, Baxa J, Lopera J, Kerby RL, Rey FE, Kwan JC.	Nucleic Acids Res	10.1093/nar/gkz148	2019
	Prebiotics from Seaweeds: An Ocean of Opportunity?	Cherry P, Yadav S, Strain CR, Allsopp PJ, McSorley EM, Ross RP, Stanton C.	Mar Drugs	10.3390/md17060327	2019
Pathogenicity	In Vitro and In Vivo Activities of DS-2969b, a Novel GyrB Inhibitor, against Clostridium difficile.	Mathur T, Barman TK, Kumar M, Singh D, Kumar R, Khera MK, Yamada M, Inoue SI, Upadhyay DJ, Masuda N.	Antimicrob Agents Chemother	10.1128/aac.02157-17	2018
	Survival of probiotics in pea protein-alginate microcapsules with or without chitosan coating during storage and in a simulated gastrointestinal environment.	Varankovich N, Martinez MF, Nickerson MT, Korber DR.	Food Sci Biotechnol	10.1007/s10068-017-0025-2	2017
	Intracellular Fusobacterium nucleatum infection attenuates antitumor immunity in esophageal squamous cell carcinoma.	Li Y, Xing S, Chen F, Li Q, Dou S, Huang Y, An J, Liu W, Zhang G.	Nat Commun	10.1038/s41467-023-40987-3	2023
	The Effect of Ag Nanoparticles and Multimicrobial Preparation as Factors Stabilizing the Microbiological Homeostasis of Feed Tables for Cornu aspersum (Müller) Snails on Snail Growth and Quality Parameters of Carcasses and Shells.	Lozicki A, Niemiec T, Pietrasik R, Paweta S, Rygalo-Galewska A, Zglinska K.	Animals (Basel)	10.3390/ani10122260	2020
Enzymology	Cloning and characterization of the bile salt hydrolase genes (bsh) from Bifidobacterium bifidum strains.	Kim GB, Miyamoto CM, Meighen EA, Lee BH.	Appl Environ Microbiol	10.1128/aem.70.9.5603-5612.2004	2004
Genetics	Genome-Wide Assessment of Stress-Associated Genes in Bifidobacteria.	Schopping M, Vesth T, Jensen K, Franzen CJ, Zeidan AA.	Appl Environ Microbiol	10.1128/aem.02251-21	2022
Pathogenicity	Growth-Inhibiting and morphostructural effects of constituents identified in Asarum heterotropoides root on human intestinal bacteria.	Perumalsamy H, Jung MY, Hong SM, Ahn YJ.	BMC Complement Altern Med	10.1186/1472-6882-13-245	2013
Metabolism	b-type dihydroorotate dehydrogenase is purified as a H2O2-forming NADH oxidase from Bifidobacterium bifidum.	Kawasaki S, Satoh T, Todoroki M, Niimura Y.	Appl Environ Microbiol	10.1128/aem.02111-08	2009
	Relationship between total phenolic contents and biological properties of propolis from 20 different regions in South Korea.	Wang X, Sankarapandian K, Cheng Y, Woo SO, Kwon HW, Perumalsamy H, Ahn YJ.	BMC Complement Altern Med	10.1186/s12906-016-1043-y	2016
	Effect of Multi-Microbial Probiotic Formulation Bokashi on Pro- and Anti-Inflammatory Cytokines Profile in the Serum, Colostrum and Milk of Sows, and in a Culture of Polymorphonuclear Cells Isolated from Colostrum.	Laskowska E, Jarosz L, Gradzki Z.	Probiotics Antimicrob Proteins	10.1007/s12602-017-9380-9	2019
	Rapid PCR Detection of Mycoplasma hominis, Ureaplasma urealyticum, and Ureaplasma parvum.	Cunningham SA, Mandrekar JN, Rosenblatt JE, Patel R.	Int J Bacteriol	10.1155/2013/168742	2013
	Impact of Environmental Microbes on the Composition of the Gut Microbiota of Adult BALB/c Mice.	Bai Z, Zhang H, Li N, Bai Z, Zhang L, Xue Z, Jiang H, Song Y, Zhou D.	PLoS One	10.1371/journal.pone.0160568	2016
Metabolism	An ATP Binding Cassette Transporter Mediates the Uptake of alpha-(1,6)-Linked Dietary Oligosaccharides in Bifidobacterium and Correlates with Competitive Growth on These Substrates.	Ejby M, Fredslund F, Andersen JM, Vujicic Zagar A, Henriksen JR, Andersen TL, Svensson B, Slotboom DJ, Abou Hachem M.	J Biol Chem	10.1074/jbc.m116.746529	2016
Pathogenicity	In Vitro Antibacterial Properties of Cefiderocol, a Novel Siderophore Cephalosporin, against Gram-Negative Bacteria.	Ito A, Sato T, Ota M, Takemura M, Nishikawa T, Toba S, Kohira N, Miyagawa S, Ishibashi N, Matsumoto S, Nakamura R, Tsuji M, Yamano Y.	Antimicrob Agents Chemother	10.1128/aac.01454-17	2018
	Impact of the Exposome on the Epigenome in Inflammatory Bowel Disease Patients and Animal Models.	Vieujean S, Caron B, Haghnejad V, Jouzeau JY, Netter P, Heba AC, Ndiaye NC, Moulin D, Barreto G, Danese S, Peyrin-Biroulet L.	Int J Mol Sci	10.3390/ijms23147611	2022
	Postnatal colonization with human "infant-type" Bifidobacterium species alters behavior of adult gnotobiotic mice.	Luk B, Veeraragavan S, Engevik M, Balderas M, Major A, Runge J, Luna RA, Versalovic J.	PLoS One	10.1371/journal.pone.0196510	2018
	The current trends and future perspectives of prebiotics research: a review	Patel S, Goyal A.	3 Biotech	10.1007/s13205-012-0044-x	2012
	2'-O-Methylation within Bacterial RNA Acts as Suppressor of TLR7/TLR8 Activation in Human Innate Immune Cells.	Rimbach K, Kaiser S, Helm M, Dalpke AH, Eigenbrod T.	J Innate Immun	10.1159/000375460	2015
Metabolism	Nursing our microbiota: molecular linkages between bifidobacteria and milk oligosaccharides.	Sela DA, Mills DA.	Trends Microbiol	10.1016/j.tim.2010.03.008	2010
	Bifidobacteria isolated from infants and cultured on human milk oligosaccharides affect intestinal epithelial function.	Chichlowski M, De Lartigue G, German JB, Raybould HE, Mills DA.	J Pediatr Gastroenterol Nutr	10.1097/mpg.0b013e31824fb899	2012
	Molecular characterization of the fecal microbiota in patients with nonalcoholic steatohepatitis--a longitudinal study.	Wong VW, Tse CH, Lam TT, Wong GL, Chim AM, Chu WC, Yeung DK, Law PT, Kwan HS, Yu J, Sung JJ, Chan HL.	PLoS One	10.1371/journal.pone.0062885	2013
Metabolism	Catabolism of glucose and lactose in Bifidobacterium animalis subsp. lactis, studied by 13C Nuclear Magnetic Resonance.	Gonzalez-Rodriguez I, Gaspar P, Sanchez B, Gueimonde M, Margolles A, Neves AR.	Appl Environ Microbiol	10.1128/aem.02529-13	2013
Enzymology	Rapid and sensitive detection of Shiga toxin-producing Escherichia coli from nonenriched stool specimens by real-time PCR in comparison to enzyme immunoassay and culture.	Grys TE, Sloan LM, Rosenblatt JE, Patel R.	J Clin Microbiol	10.1128/jcm.02013-08	2009
Enzymology	Specific identification and targeted characterization of Bifidobacterium lactis from different environmental isolates by a combined multiplex-PCR approach.	Ventura M, Reniero R, Zink R.	Appl Environ Microbiol	10.1128/aem.67.6.2760-2765.2001	2001
Enzymology	Species-specific oligonucleotide probes for five Bifidobacterium species detected in human intestinal microflora.	Yamamoto T, Morotomi M, Tanaka R.	Appl Environ Microbiol	10.1128/aem.58.12.4076-4079.1992	1992
Metabolism	Diversity, ecology and intestinal function of bifidobacteria.	Bottacini F, Ventura M, van Sinderen D, O'Connell Motherway M.	Microb Cell Fact	10.1186/1475-2859-13-s1-s4	2014
Enzymology	Localization of propionibacterium acnes in granulomas supports a possible etiologic link between sarcoidosis and the bacterium.	Negi M, Takemura T, Guzman J, Uchida K, Furukawa A, Suzuki Y, Iida T, Ishige I, Minami J, Yamada T, Kawachi H, Costabel U, Eishi Y.	Mod Pathol	10.1038/modpathol.2012.80	2012
Phylogeny	Bifidobacterium lactis DSM 10140: identification of the atp (atpBEFHAGDC) operon and analysis of its genetic structure, characteristics, and phylogeny.	Ventura M, Canchaya C, van Sinderen D, Fitzgerald GF, Zink R.	Appl Environ Microbiol	10.1128/aem.70.5.3110-3121.2004	2004
Enzymology	Bifidobacterial diversity in human feces detected by genus-specific PCR and denaturing gradient gel electrophoresis.	Satokari RM, Vaughan EE, Akkermans AD, Saarela M, de Vos WM.	Appl Environ Microbiol	10.1128/aem.67.2.504-513.2001	2001
Pathogenicity	In vitro model of colonization resistance by the enteric microbiota: effects of antimicrobial agents used in food-producing animals.	Wagner RD, Johnson SJ, Cerniglia CE.	Antimicrob Agents Chemother	10.1128/aac.00852-07	2008
Enzymology	Quantification of intestinal bacterial populations by real-time PCR with a universal primer set and minor groove binder probes: a global approach to the enteric flora.	Ott SJ, Musfeldt M, Ullmann U, Hampe J, Schreiber S.	J Clin Microbiol	10.1128/jcm.42.6.2566-2572.2004	2004
Phylogeny	Quantification of different Eubacterium spp. in human fecal samples with species-specific 16S rRNA-targeted oligonucleotide probes.	Schwiertz A, Le Blay G, Blaut M.	Appl Environ Microbiol	10.1128/aem.66.1.375-382.2000	2000
	Denaturing gradient gel electrophoresis analysis of 16S ribosomal DNA amplicons to monitor changes in fecal bacterial populations of weaning pigs after introduction of Lactobacillus reuteri strain MM53.	Simpson JM, McCracken VJ, Gaskins HR, Mackie RI.	Appl Environ Microbiol	10.1128/aem.66.11.4705-4714.2000	2000
Phylogeny	Phylogenetic analysis of the bacterial communities in marine sediments.	Gray JP, Herwig RP.	Appl Environ Microbiol	10.1128/aem.62.11.4049-4059.1996	1996
	Safety and efficacy of Sacox^® microGranulate (salinomycin sodium) for chickens for fattening and chickens reared for laying.	EFSA Panel on Additives and Products or Substances used in Animal Feed (FEEDAP), Rychen G, Aquilina G, Azimonti G, Bampidis V, de Lourdes Bastos M, Bories G, Chesson A, Cocconcelli PS, Flachowsky G, Kolar B, Kouba M, Puente SL, Lopez-Alonso M, Mayo B, Ramos F, Saarela M, Villa RE, Wallace RJ, Wester P, Brantom P, Halle I, van Beelen P, Holczknecht O, Vettori MV, Gropp J.	EFSA J	10.2903/j.efsa.2017.4670	2017
	Safety and efficacy of Monimax^® (monensin sodium and nicarbazin) for turkeys for fattening.	EFSA Panel on Additives and Products or Substances used in Animal Feed (FEEDAP), Rychen G, Aquilina G, Azimonti G, Bampidis V, Bastos ML, Bories G, Chesson A, Cocconcelli PS, Flachowsky G, Kolar B, Kouba M, Lopez-Alonso M, Lopez Puente S, Mantovani A, Mayo B, Ramos F, Ramos F, Saarela M, Villa RE, Wallace RJ, Wester P, Brantom P, Halle I, van Beelen P, Holczknecht O, Vettori MV, Gropp J.	EFSA J	10.2903/j.efsa.2017.5094	2017
	Bifidobacterium breve DSM 32583 and Limosilactobacillus fermentum CECT5716 postbiotics attenuate S. aureus and IL-33-induced Th2 responses.	Amar Y, Grube J, Koberle M, Schaubeck M, Biedermann T, Volz T.	Microbiol Res	10.1016/j.micres.2024.127913	2024
	Improving the physicochemical and antioxidative properties of fermented goat milk using carob molasses and some probiotic strains.	El-Sayed MI, Aly E, El-Deeb AM.	Food Sci Biotechnol	10.1007/s10068-023-01382-2	2024
Genetics	Draft genome sequence of Bifidobacterium breve DSM 32583, isolated from human milk.	Kujawska M, Schaubeck M, Hall LJ, Neuhaus K.	Microbiol Resour Announc	10.1128/mra.00412-23	2023
	Species- and Age/Generation-Dependent Adherence of Bifidobacterium bifidum to Human Intestinal Mucus In Vitro.	Harata G, Yoda K, Wang R, Miyazawa K, Sato M, He F, Endo A.	Microorganisms	10.3390/microorganisms9030542	2021
	Exploring the Potential Probiotic Properties of Bifidobacterium breve DSM 32583-A Novel Strain Isolated from Human Milk.	Kujawska M, Neuhaus K, Huptas C, Jimenez E, Arboleya S, Schaubeck M, Hall LJ.	Probiotics Antimicrob Proteins	10.1007/s12602-024-10346-9	2025
	Effects of Probiotics on Nonalcoholic Fatty Liver Disease in Obese Children and Adolescents.	Famouri F, Shariat Z, Hashemipour M, Keikha M, Kelishadi R.	J Pediatr Gastroenterol Nutr	10.1097/mpg.0000000000001422	2017
	The Infant-Derived Bifidobacterium bifidum Strain CNCM I-4319 Strengthens Gut Functionality.	Martin R, Bottacini F, Egan M, Chamignon C, Tondereau V, Moriez R, Knol J, Langella P, Eutamene H, Smokvina T, van Sinderen D.	Microorganisms	10.3390/microorganisms8091313	2020
	Potential Health Benefits of Ropy Exopolysaccharides Produced by Lactobacillus plantarum.	Yilmaz T, Simsek O.	Molecules	10.3390/molecules25143293	2020
	Enzymatic Adaptation of Bifidobacterium bifidum to Host Glycans, Viewed from Glycoside Hydrolyases and Carbohydrate-Binding Modules.	Katoh T, Ojima MN, Sakanaka M, Ashida H, Gotoh A, Katayama T.	Microorganisms	10.3390/microorganisms8040481	2020
	A Phylogenetic and Functional Perspective on Volatile Organic Compound Production by Actinobacteria.	Choudoir M, Rossabi S, Gebert M, Helmig D, Fierer N.	mSystems	10.1128/msystems.00295-18	2019
	Lactococcus lactis KA-FF 1-4 reduces vancomycin-resistant enterococci and impacts the human gut microbiome.	Plupjeen SN, Chawjiraphan W, Charoensiddhi S, Nitisinprasert S, Nakphaichit M.	3 Biotech	10.1007/s13205-020-02282-6	2020
	In vitro fermentation of copra meal hydrolysate by chicken microbiota.	Prayoonthien P, Nitisinprasert S, Keawsompong S.	3 Biotech	10.1007/s13205-017-1058-1	2018
Metabolism	Comparative transcriptomics reveals key differences in the response to milk oligosaccharides of infant gut-associated bifidobacteria.	Garrido D, Ruiz-Moyano S, Lemay DG, Sela DA, German JB, Mills DA.	Sci Rep	10.1038/srep13517	2015
	Protective Efficacy of Streptococcus Thermophilus Against Acute Cadmium Toxicity in Mice.	G Allam N, M Ali EM, Shabanna S, Abd-Elrahman E.	Iran J Pharm Res		2018
	Characterization of the Biological Activities of a New Polyphenol-Rich Extract from Cinnamon Bark on a Probiotic Consortium and Its Action after Enzymatic and Microbial Fermentation on Colorectal Cell Lines.	De Giani A, Pagliari S, Zampolli J, Forcella M, Fusi P, Bruni I, Campone L, Di Gennaro P.	Foods	10.3390/foods11203202	2022
Metabolism	Phylotype-Level Profiling of Lactobacilli in Highly Complex Environments by Means of an Internal Transcribed Spacer-Based Metagenomic Approach.	Milani C, Duranti S, Mangifesta M, Lugli GA, Turroni F, Mancabelli L, Viappiani A, Anzalone R, Alessandri G, Ossiprandi MC, van Sinderen D, Ventura M.	Appl Environ Microbiol	10.1128/aem.00706-18	2018
Metabolism	Characterization of the lactose transport system in the strain Bifidobacterium bifidum DSM 20082.	Krzewinski F, Brassart C, Gavini F, Bouquelet S.	Curr Microbiol	10.1007/s002849900054	1996
	Clinical effectiveness of adding probiotics to a low FODMAP diet: Randomized double-blind placebo-controlled study.	Turan B, Bengi G, Cehreli R, Akpinar H, Soyturk M.	World J Clin Cases	10.12998/wjcc.v9.i25.7417	2021
Pathogenicity	In vitro activity of tomopenem (CS-023/RO4908463) against anaerobic bacteria.	Tanaka K, Mikamo H, Nakao K, Ichiishi T, Goto T, Yamagishi Y, Watanabe K.	Antimicrob Agents Chemother	10.1128/aac.00595-08	2009
Metabolism	Hydrogen peroxide-forming NADH oxidase belonging to the peroxiredoxin oxidoreductase family: existence and physiological role in bacteria.	Nishiyama Y, Massey V, Takeda K, Kawasaki S, Sato J, Watanabe T, Niimura Y.	J Bacteriol	10.1128/jb.183.8.2431-2438.2001	2001
Metabolism	A versatile and scalable strategy for glycoprofiling bifidobacterial consumption of human milk oligosaccharides.	Locascio RG, Ninonuevo MR, Kronewitter SR, Freeman SL, German JB, Lebrilla CB, Mills DA.	Microb Biotechnol	10.1111/j.1751-7915.2008.00072.x	2009
	Gene structure and transcriptional organization of the dnaK operon of Bifidobacterium breve UCC 2003 and application of the operon in bifidobacterial tracing.	Ventura M, Zink R, Fitzgerald GF, van Sinderen D.	Appl Environ Microbiol	10.1128/aem.71.1.487-500.2005	2005
Phylogeny	Use of PCR and sodium dodecyl sulfate-polyacrylamide gel electrophoresis techniques for differentiation of Prevotella intermedia sensu stricto and Prevotella nigrescens.	Premaraj T, Kato N, Fukui K, Kato H, Watanabe K.	J Clin Microbiol	10.1128/jcm.37.4.1057-1061.1999	1999
	Characterization of the groEL and groES loci in Bifidobacterium breve UCC 2003: genetic, transcriptional, and phylogenetic analyses.	Ventura M, Canchaya C, Zink R, Fitzgerald GF, van Sinderen D.	Appl Environ Microbiol	10.1128/aem.70.10.6197-6209.2004	2004
Pathogenicity	Neoteric Biofilms Applied to Enhance the Safety Characteristics of Ras Cheese during Ripening.	Ibrahim RA, Abd El-Salam BA, Alsulami T, Ali HS, Hoppe K, Badr AN.	Foods	10.3390/foods12193548	2023
Pathogenicity	Microbial dipeptidyl peptidases of the S9B family as host-microbe isozymes.	Aljumaah MR, Roach J, Hu Y, Gunstad J, Azcarate-Peril MA.	Sci Adv	10.1126/sciadv.ads5721	2025
	Probiotic Bacteria and their Supernatants Protect Enterocyte Cell Lines from Enteroinvasive Escherichia coli (EIEC) Invasion.	Khodaii Z, Ghaderian SMH, Natanzi MM.	Int J Mol Cell Med	10.22088/acadpub.bums.6.3.183	2017
	Mucosa-associated bacterial diversity in relation to human terminal ileum and colonic biopsy samples.	Ahmed S, Macfarlane GT, Fite A, McBain AJ, Gilbert P, Macfarlane S.	Appl Environ Microbiol	10.1128/aem.01143-07	2007
Phylogeny	Characterization of bacterial communities in feces from healthy elderly volunteers and hospitalized elderly patients by using real-time PCR and effects of antibiotic treatment on the fecal microbiota.	Bartosch S, Fite A, Macfarlane GT, McMurdo ME.	Appl Environ Microbiol	10.1128/aem.70.6.3575-3581.2004	2004
	Fermented rice bran supplementation ameliorates obesity via gut microbiota and metabolism modification in female mice.	Tochitani S, Maehara Y, Kawase T, Tsukahara T, Shimizu R, Watanabe T, Maehara K, Asaoka K, Matsuzaki H.	J Clin Biochem Nutr	10.3164/jcbn.21-96	2022
	Prospects of Probiotic Adjuvant Drugs in Clinical Treatment.	Ren Z, Hong Y, Huo Y, Peng L, Lv H, Chen J, Wu Z, Wan C.	Nutrients	10.3390/nu14224723	2022
Metabolism	Probiotics in human gut microbiota can degrade host glycosaminoglycans.	Kawai K, Kamochi R, Oiki S, Murata K, Hashimoto W.	Sci Rep	10.1038/s41598-018-28886-w	2018
	Disclosing alpha-lactalbumin impact on the intestinal and vaginal microbiota of women suffering from polycystic ovary syndrome.	Alessandri G, Mancabelli L, Fontana F, Lepore E, Forte G, Burratti M, Ventura M, Turroni F.	Microb Biotechnol	10.1111/1751-7915.14540	2024
	The role of teichoic acids of bifidobacteria in driving the interaction with the human host.	Longhi G, Vergna LM, Lugli GA, Bianchi MG, Tarracchini C, Milani C, Turroni F, Bussolati O, van Sinderen D, Ventura M.	Front Microbiol	10.3389/fmicb.2025.1616397	2025
	Cocktails of probiotics pre-adapted to multiple stress factors are more robust under simulated gastrointestinal conditions than their parental counterparts and exhibit enhanced antagonistic capabilities against Escherichia coli and Staphylococcus aureus.	Mathipa MG, Thantsha MS.	Gut Pathog	10.1186/s13099-015-0053-5	2015
	Bifidobacterial beta-Galactosidase-Mediated Production of Galacto-Oligosaccharides: Structural and Preliminary Functional Assessments.	Ambrogi V, Bottacini F, Mac Sharry J, van Breen J, O'Keeffe E, Walsh D, Schoemaker B, Cao L, Kuipers B, Lindner C, Jimeno ML, Doyaguez EG, Hernandez-Hernandez O, Moreno FJ, Schoterman M, van Sinderen D.	Front Microbiol	10.3389/fmicb.2021.750635	2021
Genetics	Exploring Amino Acid Auxotrophy in Bifidobacterium bifidum PRL2010.	Ferrario C, Duranti S, Milani C, Mancabelli L, Lugli GA, Turroni F, Mangifesta M, Viappiani A, Ossiprandi MC, van Sinderen D, Ventura M.	Front Microbiol	10.3389/fmicb.2015.01331	2015
Phylogeny	Investigation of the evolutionary development of the genus Bifidobacterium by comparative genomics.	Lugli GA, Milani C, Turroni F, Duranti S, Ferrario C, Viappiani A, Mancabelli L, Mangifesta M, Taminiau B, Delcenserie V, van Sinderen D, Ventura M.	Appl Environ Microbiol	10.1128/aem.02004-14	2014
Pathogenicity	Exploring the Ecology of Bifidobacteria and Their Genetic Adaptation to the Mammalian Gut.	Duranti S, Longhi G, Ventura M, van Sinderen D, Turroni F.	Microorganisms	10.3390/microorganisms9010008	2020
Metabolism	Ability of bifidobacteria to metabolize chitin-glucan and its impact on the gut microbiota.	Alessandri G, Milani C, Duranti S, Mancabelli L, Ranjanoro T, Modica S, Carnevali L, Statello R, Bottacini F, Turroni F, Ossiprandi MC, Sgoifo A, van Sinderen D, Ventura M.	Sci Rep	10.1038/s41598-019-42257-z	2019
	Prevalence of Antibiotic Resistance Genes among Human Gut-Derived Bifidobacteria.	Duranti S, Lugli GA, Mancabelli L, Turroni F, Milani C, Mangifesta M, Ferrario C, Anzalone R, Viappiani A, van Sinderen D, Ventura M.	Appl Environ Microbiol	10.1128/aem.02894-16	2017
	DNA enrichment and tagmentation method for species-level identification and strain-level differentiation using ON-rep-seq.	Krych L, Castro-Mejia JL, Forero-Junco LM, Moesby DN, Mikkelsen MB, Rasmussen MA, Sykulski M, Nielsen DS.	Commun Biol	10.1038/s42003-019-0617-x	2019
	Sanitary impact evaluation of drinking water in storage reservoirs in Moroccan rural area.	Aziz F, Parrado Rubio J, Ouazzani N, Dary M, Manyani H, Rodriguez Morgado B, Mandi L.	Saudi J Biol Sci	10.1016/j.sjbs.2016.01.034	2017
	Identification of iron-regulated genes of Bifidobacterium breve UCC2003 as a basis for controlled gene expression.	Cronin M, Zomer A, Fitzgerald GF, van Sinderen D.	Bioeng Bugs	10.4161/bbug.18985	2012
	Concurrent Hydrolysis-Fermentation of Tenebrio molitor Protein by Lactobacillus plantarum KCCM13068P Attenuates Inflammation in RAW 264.7 Macrophages and Constipation in Loperamide-Induced Mice.	Jo HS, Song DB, Lee SH, Lee KS, Yang J, Hong SM.	Foods	10.3390/foods14111886	2025
	Apoptosis-Inducing Effects of Short-Chain Fatty Acids-Rich Fermented Pistachio Milk in Human Colon Carcinoma Cells.	Lim SJ, Kwon HC, Shin DM, Choi YJ, Han SG, Kim YJ, Han SG.	Foods	10.3390/foods12010189	2023
	Deciphering the anti-obesity mechanisms of pharmabiotic probiotics through advanced multiomics analysis.	Kim YR, Choi TR, Jo SH, Song WS, Kim T, Kim MG, Baek JH, Kwon SY, Choi BG, Seo SW, Jang CS, Yang YH, Kim YG.	iScience	10.1016/j.isci.2025.111890	2025
	Advances in research on the intestinal microbiota in the mechanism and prevention of colorectal cancer (Review).	Sun W, Ma S, Meng D, Wang C, Zhang J.	Mol Med Rep	10.3892/mmr.2025.13498	2025
	Effects of derivatization and probiotic transformation on the antioxidative activity of fruit polyphenols.	Wang Y, Wang C, Shi J, Zhang Y.	Food Chem X	10.1016/j.fochx.2024.101776	2024
Metabolism	Bacterial species involved in the conversion of dietary flavonoids in the human gut.	Braune A, Blaut M.	Gut Microbes	10.1080/19490976.2016.1158395	2016
Enzymology	Identification of one novel candidate probiotic Lactobacillus plantarum strain active against influenza virus infection in mice by a large-scale screening.	Kechaou N, Chain F, Gratadoux JJ, Blugeon S, Bertho N, Chevalier C, Le Goffic R, Courau S, Molimard P, Chatel JM, Langella P, Bermudez-Humaran LG.	Appl Environ Microbiol	10.1128/aem.03075-12	2013
	Xylo-Oligosaccharide Production from Wheat Straw Xylan Catalyzed by a Thermotolerant Xylanase from Rumen Metagenome and Assessment of Their Probiotic Properties.	Wu Y, Liu C, Qiu Q, Zhao X.	Microorganisms	10.3390/microorganisms13112602	2025
	A hybrid bacterium with tumor-associated macrophage polarization for enhanced photothermal-immunotherapy.	Zhao J, Huang H, Zhao J, Xiong X, Zheng S, Wei X, Zhou S.	Acta Pharm Sin B	10.1016/j.apsb.2021.10.019	2022
	Effect of a Diet Supplemented with Sphingomyelin and Probiotics on Colon Cancer Development in Mice.	Marzo F, Jauregui P, Barrenetxe J, Martinez-Penuela A, Ibanez FC, Milagro FI.	Probiotics Antimicrob Proteins	10.1007/s12602-022-09916-6	2022
	Viability of Probiotic Microorganisms and the Effect of Their Addition to Fruit and Vegetable Juices.	Maia MS, Domingos MM, de Sao Jose JFB.	Microorganisms	10.3390/microorganisms11051335	2023
	Potential of Persimmon Dietary Fiber Obtained from Byproducts as Antioxidant, Prebiotic and Modulating Agent of the Intestinal Epithelial Barrier Function.	Salazar-Bermeo J, Moreno-Chamba B, Martinez-Madrid MC, Saura D, Valero M, Marti N.	Antioxidants (Basel)	10.3390/antiox10111668	2021
Metabolism	Enhanced Antioxidant Activity for Apple Juice Fermented with Lactobacillus plantarum ATCC14917.	Li Z, Teng J, Lyu Y, Hu X, Zhao Y, Wang M.	Molecules	10.3390/molecules24010051	2018
	Isolation of Mycobacterium avium subspecies paratuberculosis reactive CD4 T cells from intestinal biopsies of Crohn's disease patients.	Olsen I, Tollefsen S, Aagaard C, Reitan LJ, Bannantine JP, Andersen P, Sollid LM, Lundin KE.	PLoS One	10.1371/journal.pone.0005641	2009
Metabolism	Superantigenic Staphylococcus aureus stimulates production of interleukin-17 from memory but not naive T cells.	Islander U, Andersson A, Lindberg E, Adlerberth I, Wold AE, Rudin A.	Infect Immun	10.1128/iai.00724-09	2010
	Conversion of Wheat Bran to Xylanases and Dye Adsorbent by Streptomyces thermocarboxydus.	Tran TN, Doan CT, Wang SL.	Polymers (Basel)	10.3390/polym13020287	2021
	Exopolysaccharide production of Lactobacillus salivarius BCRC 14759 and Bifidobacterium bifidum BCRC 14615	Liu CT, Hsu IT, Chou CC, Lo PR, Yu RC.	World J Microbiol Biotechnol	10.1007/s11274-009-9965-x	2009
	Therapeutic Anti-Depressant Potential of Microbial GABA Produced by Lactobacillus rhamnosus Strains for GABAergic Signaling Restoration and Inhibition of Addiction-Induced HPA Axis Hyperactivity.	Tette FM, Kwofie SK, Wilson MD.	Curr Issues Mol Biol	10.3390/cimb44040096	2022
	Application of probiotic bacteria in ginsenoside bioconversion and enhancing its health-promoting benefits: a review.	Vasquez R, Song JH, Park YS, Paik HD, Kang DK.	Food Sci Biotechnol	10.1007/s10068-024-01734-6	2025
Phylogeny	Effects of Pretreatment with Bifidobacterium bifidum Using 16S Ribosomal RNA Gene Sequencing in a Mouse Model of Acute Colitis Induced by Dextran Sulfate Sodium.	Weng YJ, Jiang DX, Liang J, Ye SC, Tan WK, Yu CY, Zhou Y	Med Sci Monit	10.12659/MSM.928478	2021
Metabolism	Utilization of Seafood Processing By-Products for Production of Proteases by Paenibacillus sp. TKU052 and Their Application in Biopeptides' Preparation.	Doan CT, Tran TN, Nguyen VB, Nguyen AD, Wang SL	Mar Drugs	10.3390/md18110574	2020
Metabolism	Inhibitory effect of Bifidobacterium bifidum ATCC 29521 on colitis and its mechanism.	Din AU, Hassan A, Zhu Y, Zhang K, Wang Y, Li T, Wang Y, Wang G	J Nutr Biochem	10.1016/j.jnutbio.2020.108353	2020
Pathogenicity	Analysis of hypoxia-associated dendritic cells in colitic mice and effects of probiotics on IL-10 production in inflammatory dendritic-cells under hypoxia.	Ogita T, Miyamoto J, Hirabayashi Y, Rossi M, Mazzarella G, Takahashi I, Tanabe S, Suzuki T	Benef Microbes	10.3920/BM2018.0171	2019
Metabolism	Purified thioredoxin reductase from O2-sensitive Bifidobacterium bifidum degrades H2O2 by interacting with alkyl hydroperoxide reductase.	Satoh T, Todoroki M, Kobayashi K, Niimura Y, Kawasaki S	Anaerobe	10.1016/j.anaerobe.2019.03.012	2019
	Promoting Probiotics Survival by Microencapsualtion with Hylon Starch and Genipin Cross-linked Coatings in Simulated Gastro-intestinal Condition and Heat Treatment.	Khosravi Zanjani MA, Ehsani MR, Ghiassi Tarzi B, Sharifan A	Iran J Pharm Res		2018
Metabolism	Preparation and prebiotic potential of pectin oligosaccharides obtained from citrus peel pectin.	Zhang S, Hu H, Wang L, Liu F, Pan S	Food Chem	10.1016/j.foodchem.2017.10.071	2017
Pathogenicity	Integration of genomic and proteomic data to identify candidate genes in HT-29 cells after incubation with Bifidobacterium bifidum ATCC 29521.	Wang BG, Wu Y, Qiu L, Shah NP, Xu F, Wei H	J Dairy Sci	10.3168/jds.2015-10577	2016
Pathogenicity	Effect of oligosaccharides on the adhesion of gut bacteria to human HT-29 cells.	Altamimi M, Abdelhay O, Rastall RA	Anaerobe	10.1016/j.anaerobe.2016.03.010	2016
Pathogenicity	Efficacy of oral Bifidobacterium bifidum ATCC 29521 on microflora and antioxidant in mice.	Wang BG, Xu HB, Xu F, Zeng ZL, Wei H	Can J Microbiol	10.1139/cjm-2015-0685	2015
Genetics	Complete genome sequence of Bifidobacterium bifidum JCM 1255(T) isolated from feces of a breast-fed infant.	Morita H, Toh H, Oshima K, Nakano A, Shindo C, Komiya K, Arakawa K, Suda W, Honda K, Hattori M	J Biotechnol	10.1016/j.jbiotec.2015.06.413	2015
	A Novel Lactobacillus casei LP1 Producing 1,4-Dihydroxy-2-Naphthoic Acid, a Bifidogenic Growth Stimulator.	Kang JE, Kim TJ, Moon GS	Prev Nutr Food Sci	10.3746/pnf.2015.20.1.78	2015
	Microencapsulation of Probiotics by Calcium Alginate-gelatinized Starch with Chitosan Coating and Evaluation of Survival in Simulated Human Gastro-intestinal Condition.	Khosravi Zanjani MA, Ghiassi Tarzi B, Sharifan A, Mohammadi N	Iran J Pharm Res		2014
Pathogenicity	Fourier transform infra-red spectroscopy and flow cytometric assessment of the antibacterial mechanism of action of aqueous extract of garlic (Allium sativum) against selected probiotic Bifidobacterium strains.	Booyens J, Thantsha MS	BMC Complement Altern Med	10.1186/1472-6882-14-289	2014
Pathogenicity	Influence of bovine lactoferrin on the growth of selected probiotic bacteria under aerobic conditions.	Chen PW, Ku YW, Chu FY	Biometals	10.1007/s10534-014-9758-z	2014
Metabolism	BopA does not have a major role in the adhesion of Bifidobacterium bifidum to intestinal epithelial cells, extracellular matrix proteins, and mucus.	Kainulainen V, Reunanen J, Hiippala K, Guglielmetti S, Vesterlund S, Palva A, Satokari R	Appl Environ Microbiol	10.1128/AEM.01993-13	2013
Metabolism	Antimicrobial potential for the combination of bovine lactoferrin or its hydrolysate with lactoferrin-resistant probiotics against foodborne pathogens.	Chen PW, Jheng TT, Shyu CL, Mao FC	J Dairy Sci	10.3168/jds.2012-6112	2013
	In vitro prebiotic evaluation of exopolysaccharides produced by marine isolated lactic acid bacteria.	Hongpattarakere T, Cherntong N, Wichienchot S, Kolida S, Rastall RA	Carbohydr Polym	10.1016/j.carbpol.2011.08.085	2011
Pathogenicity	Incorporation of citrus fibers in fermented milk containing probiotic bacteria.	Sendra E, Fayos P, Lario Y, Fernandez-Lopez J, Sayas-Barbera E, Perez-Alvarez JA	Food Microbiol	10.1016/j.fm.2007.09.003	2007
Pathogenicity	Basic characteristics of Sporolactobacillus inulinus BCRC 14647 for potential probiotic properties.	Huang HY, Huang SY, Chen PY, King VA, Lin YP, Tsen JH	Curr Microbiol	10.1007/s00284-006-0496-5	2007
Pathogenicity	Molecular properties and prebiotic effect of inulin obtained from artichoke (Cynara scolymus L.).	Lopez-Molina D, Navarro-Martinez MD, Rojas Melgarejo F, Hiner AN, Chazarra S, Rodriguez-Lopez JN	Phytochemistry	10.1016/j.phytochem.2005.04.003	2005
Enzymology	Molecular identification of monomeric aspartate racemase from Bifidobacterium bifidum.	Yamashita T, Ashiuchi M, Ohnishi K, Kato S, Nagata S, Misono H	Eur J Biochem	10.1111/j.1432-1033.2004.04445.x	2004
Transcriptome	Sequence analysis of 16S rRNA genes amplified from two ribosomal RNA gene clusters of Bifidobacterium bifidum.	Yoon JH, Yim DK, Goodfellow M, Park YH	Antonie Van Leeuwenhoek	10.1023/a:1002025100444	1999
Enzymology	Viability and enzymatic activity of bifidobacteria in milk.	Hughes DB, Hoover DG	J Dairy Sci	10.3168/jds.S0022-0302(95)76634-6	1995
Phylogeny	Phylogenetic evidence for the transfer of Eubacterium suis to the genus Actinomyces as Actinomyces suis comb. nov.	Ludwig W, Kirchhof G, Weizenegger M, Weiss N	Int J Syst Bacteriol	10.1099/00207713-42-1-161	1992
Metabolism	Binding of mutagens by fractions of the cell wall skeleton of lactic acid bacteria on mutagens.	Zhang XB, Ohta Y	J Dairy Sci	10.3168/jds.S0022-0302(91)78306-9	1991
Metabolism	In vitro binding of mutagenic pyrolyzates to lactic acid bacterial cells in human gastric juice.	Zhang XB, Ohta Y	J Dairy Sci	10.3168/jds.S0022-0302(91)78221-0	1991
	Evaluation of Microencapsulated Synbiotic Preparations Containing Lactobionic Acid.	Goderska K, Kozlowski P	Appl Biochem Biotechnol	10.1007/s12010-021-03622-9	2021
Metabolism	Comparison of mupirocin-based media for selective enumeration of bifidobacteria in probiotic supplements.	Bunesova V, Musilova S, Geigerova M, Pechar R, Rada V	J Microbiol Methods	10.1016/j.mimet.2014.12.016	2014
Metabolism	Role of extracellular transaldolase from Bifidobacterium bifidum in mucin adhesion and aggregation.	Gonzalez-Rodriguez I, Sanchez B, Ruiz L, Turroni F, Ventura M, Ruas-Madiedo P, Gueimonde M, Margolles A	Appl Environ Microbiol	10.1128/AEM.08024-11	2012
Phylogeny	Characterization of the phylogenetic diversity of two novel species belonging to the genus Bifidobacterium: Bifidobacterium cebidarum sp. nov. and Bifidobacterium leontopitheci sp. nov.	Duranti S, Lugli GA, Viappiani A, Mancabelli L, Alessandri G, Anzalone R, Longhi G, Milani C, Ossiprandi MC, Turroni F, Ventura M	Int J Syst Evol Microbiol	10.1099/ijsem.0.004032	2020
Phylogeny	Characterization of the phylogenetic diversity of five novel species belonging to the genus Bifidobacterium: Bifidobacterium castoris sp. nov., Bifidobacterium callimiconis sp. nov., Bifidobacterium goeldii sp. nov., Bifidobacterium samirii sp. nov. and Bifidobacterium dolichotidis sp. nov.	Duranti S, Lugli GA, Napoli S, Anzalone R, Milani C, Mancabelli L, Alessandri G, Turroni F, Ossiprandi MC, van Sinderen D, Ventura M	Int J Syst Evol Microbiol	10.1099/ijsem.0.003306	2019
Phylogeny	Bifidobacterium catulorum sp. nov., a novel taxon from the faeces of the baby common marmoset (Callithrix jacchus).	Modesto M, Michelini S, Oki K, Biavati B, Watanabe K, Mattarelli P	Int J Syst Evol Microbiol	10.1099/ijsem.0.002545	2018

References

#8828	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20456
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#35445	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#116806	Collection of Institut Pasteur ; Curators of the CIP; CIP 56.7
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Bifidobacterium bifidum (DSM 20456, ATCC 29521, JCM 1255)

Name and taxonomic classification

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Physiology and metabolism

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