Bifidobacterium bifidum Ti | Type strain | DSM 20456, ATCC 29521, JCM 1255

Strain identifier

BacDive ID: 1693

Type strain:

Species: Bifidobacterium bifidum

Strain Designation: Ti

Culture col. no.: DSM 20456, ATCC 29521, JCM 1255

Section

Name and taxonomic classification
Morphology and physiology
Culture and growth conditions
Isolation, sampling and environmental information
Application and interaction
Molecular biology
Strain availability

External links

Information on the name and the taxonomic classification.Name and taxonomic classification

[Ref.: #8828]	Domain	Bacteria
[Ref.: #8828]	Phylum	Actinobacteria
[Ref.: #8828]	Class	Actinobacteria
[Ref.: #8828]	Order	Bifidobacteriales
[Ref.: #8828]	Family	Bifidobacteriaceae
[Ref.: #8828]	Genus	Bifidobacterium
[Ref.: #8828]	Species	Bifidobacterium bifidum
[Ref.: #8828]	Full Scientific Name	Bifidobacterium bifidum (Tissier 1900) Orla-Jensen 1924
[Ref.: #8828]	Strain Designation	Ti
[Ref.: #8828]	Type strain

		Prokaryotic Nomenclature Up-to-date (PNU)	Taxonomical status	Literature reference
	Last PNU update	19-11-2019 (DD-MM-YYYY)
[Ref.: #20215]	Domain	Bacteria
[Ref.: #20215]	Phylum	Actinobacteria
[Ref.: #20215]	Class	Actinobacteria		Int. J. Syst. Bacteriol. 47:479*
[Ref.: #20215]	Family	Bifidobacteriaceae		Int. J. Syst. Bacteriol. 47:479*
[Ref.: #20215]	Genus	Bifidobacterium	genus (AL)	Int. J. Syst. Bacteriol. 30:225
[Ref.: #20215]	Species	Bifidobacterium bifidum	comb. nov. (VP)	Int. J. Syst. Evol. Microbiol. 9:2007
[Ref.: #20215]	Full Scientific Name	Bifidobacterium bifidum (Tissier 1900) Orla-Jensen 1924 emend. Nouioui et al. 2018

Information on morphological and physiological propertiesMorphology and physiology

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #8828]	4421	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+
[Ref.: #8828]	4420	-	-	-	-	-	-	-	-	-	-	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
[Ref.: #8828]	4419	-	-	-	-	-	-	-	-	-	-	+	+	+	+/-	+/-	-	-	-	-	-	-	-	-	-	-	+	-	-	+/-	+	+	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
[Ref.: #8828]	4418	-	-	-	-	-	-	-	-	-	-	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
[Ref.: #8828]	4417	-	-	-	-	-	-	-	-	-	-	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
[Ref.: #8828]	4416	-	-	-	-	-	-	-	-	-	-	+/-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+/-

[Ref.: #8828]	Murein short key	A21.07
[Ref.: #8828]	Murein types	A4ß L-Orn-D-Ser-D-Asp

[Ref.: #8828]

Oxygen tolerance

anaerobe

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #8828]

Culture medium

BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58), 37°C, anaerobic

[Ref.: #8828]

Culture medium growth

[Ref.: #8828]

Culture medium link

medium recipe provided by DSMZ

[Ref.: #35445]

Culture medium

MEDIUM 20 - for Anaerobic bacteria

[Ref.: #35445]

Culture medium growth

[Ref.: #35445]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #8828]			growth	37 ̊C
[Ref.: #35445]			growth	37 ̊C

[Ref.: #8828]	Temperature range	mesophilic
[Ref.: #35445]	Temperature range	mesophilic

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #8828]

Sample type/isolated from

stool of breast-fed infant

Isolation sources categories

#Host	#Human	#Child
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsApplication and interaction

[Ref.: #8828]

Biosafety level

Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassMolecular biology

Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence database	Sequence accession description	Sequence accession number	Sequence type	Sequence length (bp)	Associated NCBI tax ID
[Ref.: #8828]	whole genome shotgun sequence, Whole Genome Shotgun (WGS) Sequence INSDC	Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456, whole genome shotgun sequencing project	JDUM00000000		50	500634
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Bifidobacterium bifidum rpoB gene for RNA polymerase beta chain, partial cds, strain: ATCC 29521	AB198730		129	500634	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Bifidobacterium bifidum rpoB gene for RNA polymerase beta chain, partial cds, strain: ATCC 29521, rifaximin resistant clone	AB198731		129	500634	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium bifidum strain ATCC 29521 L-lactate dehydrogenase gene, partial cds	AF261671		312	500634	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium bifidum strain ATCC 29521 Tuf gene, partial cds	AY372041		988	500634	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium bifidum strain ATCC 29521 ATP synthase beta chain (atpD) gene, partial cds	AY487145		1120	500634	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium bifidum strain ATCC 29521 bile salt hydrolase (bsh) gene, complete cds	AY604517		951	500634	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium bifidum strain KCTC 3202 RNA polymerase beta subunit (rpoB) gene, partial cds	EU780710		315	1681	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium bifidum DSM 20456 strain ATCC 29521 23S ribosomal RNA gene, partial sequence	GQ340907		488	500634	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium bifidum UTP-monosaccharide-1-phosphate uridylyltransferase (ugpA) gene, complete cds	KC261357		1467	1681	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium bifidum UDP-glucose-hexose-1-phosphate uridylyltransferase (galT1) gene, complete cds	KC261358		1251	1681	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium bifidum UDP-glucose-hexose-1-phosphate uridylyltransferase (galT2) gene, complete cds	KC261359		1515	1681	*
[Ref.: #20218]	INSDC Sequence	B.bifidum small subunit ribosomal RNA gene	M38018		1532	500634	*
[Ref.: #20218]	INSDC Sequence	Bifidobacterium bifidum (ATCC 29521) 16S ribosomal RNA gene, partial	M84777	16S	642	1681	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium bifidum pyruvate kinase gene, partial cds	AF384982		337	1681	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium bifidum strain DSM 20456 transaldolase gene, partial cds	AF417533		301	500634	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium bifidum strain DSM 20456 transaldolase-like gene, partial sequence	AF417538		1090	500634	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium bifidum strain DSM 20456 putative xylulose 5-phosphate/fructose 6-phosphate phosphoketolase (xfp) gene, partial cds	AY377398		503	500634	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium bifidum DSM 20456 16S ribosomal RNA gene, partial sequence	HM007578	16S	1344	500634	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium bifidum DSM 20456 23S ribosomal RNA gene, partial sequence	HM007609		2558	500634	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium bifidum DSM 20456 = JCM 1255 16S ribosomal RNA gene and 16S-23S ribosomal RNA intergenic spacer, partial sequence	JQ347252	16S	742	500634	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium bifidum DSM 20456 = JCM 1255 bile salt hydrolase gene, partial cds	JQ696814		484	500634	*
[Ref.: #20218]	INSDC Sequence	Bifidobacterium bifidum 23S rRNA gene insertion sequence	M85095		105	1681	*
[Ref.: #20218]	INSDC Sequence	16S rRNA [Bifidobacterium bifidum, DSM 20456T, Genomic, 1532 nt]	S83624	16S	1532	1681	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium bifidum strain DSMZ 20456 S-ribosylhomocysteinase (luxS) gene, partial cds	EF042118		305	500634	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Bifidobacterium bifidum gene for 16S rRNA, partial sequence, strain: JCM 1255	AB116283	16S	477	500634	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Bifidobacterium bifidum gene for 16S rRNA, partial sequence, strain: JCM 1255	AB507078	16S	668	500634	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium bifidum heat shock protein 60 (hsp60) gene, partial cds	AY004280		590	500634	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium bifidum GroES gene, partial cds	AY585252		196	500634	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium bifidum JCM 1255 DnaK (dnaK) gene, partial cds	AY642868		535	500634	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium bifidum JCM 1255 GrpE (grpE) gene, partial cds	AY642888		177	500634	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium bifidum nonfunctional galacto-N-biose/lacto-N-biose I-binding protein (gltA) gene, complete cds	JF332150		1381	500634	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium bifidum strain KCTC 3202 16S ribosomal RNA gene, partial sequence	GU361813	16S	1480	1681	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium bifidum strain KCTC 3202 heat shock protein 60 (hsp60) gene, partial cds	GU361836		604	1681	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium bifidum strain KCTC 3202 16S ribosomal RNA gene, partial sequence	U25951	16S	1488	1681	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium bifidum KCTC 3202 16S rRNA gene	U25952	16S	1488	1681	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium bifidum RpoC (rpoC) gene, partial cds	DQ198389		695	1681	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium bifidum strain LMG 11041 DnaB (dnaB) gene, partial cds	DQ234313		207	1681	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium bifidum strain LMG 11041 DnaG (dnaG) gene, partial cds	DQ234355		370	1681	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium bifidum strain LMG 11041 PurF (purF) gene, partial cds	DQ234402		446	1681	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium bifidum DnaJ1 (dnaJ1) gene, partial cds	DQ256093		386	1681	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Bifidobacterium bifidum gene for 16S rRNA, partial sequence, strain: NBRC 100015	AB681129	16S	1453	1681	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Bifidobacterium bifidum mar gene for monomeric aspartate racemase, complete cds	AB179841		825	1681	*

Availability in culture collectionsStrain availability

[Ref.: #8828]

Culture collection no.

DSM 20456, ATCC 29521, JCM 1255

[Ref.: #8828]

Strain history

<- T. Mitsuoka <- Tissier, Ti

[Ref.: #20218]

Associated Passport(s) in StrainInfo

5383, 5377, 5385

References

#8828

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20456

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#35445 ; Curators of the CIP;
* These References are textmined

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