[Ref.: #8808] |
Sample type/isolated from |
bovine rumen |
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[Ref.: #67770] |
Sample type/isolated from |
Rumen of cattle |
* marker position based on {}
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Isolation sources categories |
#Host |
#Mammals |
#Bovinae (Cow, Cattle) |
#Host Body-Site |
#Organ |
#Rumen |
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Information on genomic background e.g. entries in nucleic sequence databass Sequence information
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16S Sequence information: |
Only first 5 entries are displayed. Click here to see all.Click here to see only first 5 entries. |
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Sequence accession description |
Seq. accession number |
Sequence length (bp) |
Sequence database |
Associated NCBI tax ID |
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[Ref.: #67770] |
Bifidobacterium boum gene for 16S ribosomal RNA, partial sequence, strain: JCM 1211 |
LC071799 |
1421 |
|
78343 tax ID |
[Ref.: #20218] |
Bifidobacterium boum strain DSM 20432 16S ribosomal RNA gene, partial sequence |
GQ487635 |
141 |
|
78343 tax ID |
* |
[Ref.: #20218] |
Bifidobacterium boum culture-collection DSM:20432 16S-23S ribosomal RNA intergenic spacer, partial sequence |
JQ363654 |
421 |
|
78343 tax ID |
* |
[Ref.: #20218] |
Bifidobacterium boum gene for 16S rRNA, partial sequence, strain: JCM 1211 |
AB116287 |
479 |
|
78343 tax ID |
* |
[Ref.: #20218] |
Bifidobacterium boum gene for 16S rRNA, partial sequence, strain: JCM 1211 |
AB507082 |
669 |
|
78343 tax ID |
* |
[Ref.: #20218] |
Bifidobacterium boum gene for 16S rRNA, partial sequence, strain: JCM 1211 |
D86190 |
1517 |
|
78343 tax ID |
* |
[Ref.: #20218] |
Bifidobacterium boum strain KCTC 3227 16S ribosomal RNA gene, partial sequence |
GU361814 |
1481 |
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78343 tax ID |
* |
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Availability in culture collections External links
[Ref.: #8808] |
Culture collection no. |
DSM 20432, ATCC 27917, JCM 1211, BCRC 14677, CCUG 24608, CGMCC 1.2272, KCTC 3227, LMG 10736 |
[Ref.: #71341] |
SI-ID 1242
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* |
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Literature: |
|
Topic |
Title |
Authors |
Journal |
DOI |
Year |
|
Phylogeny |
Bifidobacterium apri sp. nov., a thermophilic actinobacterium isolated from the digestive tract of wild pigs (Sus scrofa). |
Pechar R, Killer J, Salmonova H, Geigerova M, Svejstil R, Svec P, Sedlacek I, Rada V, Benada O |
Int J Syst Evol Microbiol |
10.1099/ijsem.0.001956 |
2017 |
* |
Phylogeny |
Species identification of genus Bifidobacterium based on partial HSP60 gene sequences and proposal of Bifidobacterium thermacidophilum subsp. porcinum subsp. nov. |
Zhu L, Li W, Dong X |
Int J Syst Evol Microbiol |
10.1099/ijs.0.02617-0 |
2003 |
* |
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- References
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#8808 |
Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ;
DSM 20432
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#66794 |
Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg:
BRENDA, the ELIXIR core data resource in 2021: new developments and updates.
Nucleic Acids Res. 49:
D498 - D508
2020 (
DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
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#67770 |
Japan Collection of Microorganism (JCM) ; Curators of the JCM;
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#68371 |
Automatically annotated from API 50CH acid .
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#69479 |
João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.:
MicrobeAtlas 1.0 beta
.
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#71341 |
Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.:
StrainInfo: A central database for resolving microbial strain identifiers
.
(
DOI 10.60712/SI-ID1242.1 )
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- * These data were automatically processed and therefore are not curated
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