Bifidobacterium boum RU917 | Type strain | DSM 20432, ATCC 27917

Strain identifier

BacDive ID: 1694

Type strain:

Species: Bifidobacterium boum

Strain Designation: RU917

Culture col. no.: DSM 20432, ATCC 27917

Section

Name and taxonomic classification
Morphology and physiology
Culture and growth conditions
Isolation, sampling and environmental information
Application and interaction
Molecular biology
Strain availability

External links

Information on the name and the taxonomic classification.Name and taxonomic classification

[Ref.: #8808]	Domain	Bacteria
[Ref.: #8808]	Phylum	Actinobacteria
[Ref.: #8808]	Class	Actinobacteria
[Ref.: #8808]	Order	Bifidobacteriales
[Ref.: #8808]	Family	Bifidobacteriaceae
[Ref.: #8808]	Genus	Bifidobacterium
[Ref.: #8808]	Species	Bifidobacterium boum
[Ref.: #8808]	Full Scientific Name	Bifidobacterium boum Scardovi et al. 1979
[Ref.: #8808]	Strain Designation	RU917
[Ref.: #8808]	Type strain

		Prokaryotic Nomenclature Up-to-date (PNU)	Taxonomical status	Literature reference
[Ref.: #20215]	Domain	Bacteria
[Ref.: #20215]	Phylum	Actinobacteria
[Ref.: #20215]	Class	Actinobacteria		Int. J. Syst. Bacteriol. 47:483*
[Ref.: #20215]	Family	Bifidobacteriaceae		Int. J. Syst. Bacteriol. 47:487*
[Ref.: #20215]	Genus	Bifidobacterium	genus (AL)	Int. J. Syst. Bacteriol. 30:225
[Ref.: #20215]	Species	Bifidobacterium boum	species (AL)	Int. J. Syst. Bacteriol. 30:225
[Ref.: #20215]	Full Scientific Name	Bifidobacterium boum Scardovi et al. 1979

Information on morphological and physiological propertiesMorphology and physiology

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #8808]	2668	-	-	-	-	-	-	-	-	-	-	+	+	+	-	-	-	-	-	-	-	-	+	-	-	-	+	-	-	+	-	+	+	-	-	-	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-

[Ref.: #8808]	Murein short key	A11.38
[Ref.: #8808]	Murein types	A4alpha L-Lys-D-Ser-D-Glu

[Ref.: #8808]

Oxygen tolerance

anaerobe

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #8808]

Culture medium

BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58), 37°C, anaerobic

[Ref.: #8808]

Culture medium growth

[Ref.: #8808]

Culture medium link

medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #8808]			growth	37 ̊C

[Ref.: #8808]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #8808]

Sample type/isolated from

bovine rumen

Isolation sources categories

#Host	#Mammals	#Bovinae (Cow, Cattle)
#Host Body-Site	#Organ	#Rumen

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsApplication and interaction

[Ref.: #8808]

Biosafety level

Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassMolecular biology

[Ref.: #8808]

GC-content

60.0 mol%

Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence database	Sequence accession description	Sequence accession number	Sequence length (bp)	Associated NCBI tax ID
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium boum strain KCTC 3227 RNA polymerase beta subunit (rpoB) gene, partial cds	EU780711	315	78343	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium boum strain BCRC14677 Tuf (tuf) gene, partial cds	FJ549342	770	78343	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium boum strain DSM 20432 putative xylulose 5-phosphate/fructose 6-phosphate phosphoketolase (xfp) gene, partial cds	AY377399	503	78343	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium boum strain DSM 20432 16S ribosomal RNA gene, partial sequence	GQ487635	141	78343	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium boum culture-collection DSM:20432 chaperone protein DnaK (dnaK) gene, partial cds	JQ363626	631	78343	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium boum culture-collection DSM:20432 16S-23S ribosomal RNA intergenic spacer, partial sequence	JQ363654	421	78343	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Bifidobacterium boum gene for 16S rRNA, partial sequence, strain: JCM 1211	AB116287	479	78343	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Bifidobacterium boum gene for 16S rRNA, partial sequence, strain: JCM 1211	AB507082	669	78343	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium boum heat shock protein 60 (hsp60) gene, partial cds	AY004285	590	78343	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Bifidobacterium boum gene for 16S rRNA, partial sequence, strain: JCM 1211	D86190	1517	78343	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium boum strain KCTC 3227 16S ribosomal RNA gene, partial sequence	GU361814	1481	78343	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium boum strain KCTC 3227 heat shock protein 60 (hsp60) gene, partial cds	GU361837	604	78343	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium boum RpoC (rpoC) gene, partial cds	DQ198417	695	78343	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium boum strain LMG 10736 DnaB (dnaB) gene, partial cds	DQ234341	207	78343	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium boum strain LMG 10736 DnaG (dnaG) gene, partial cds	DQ234381	370	78343	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium boum strain LMG 10736 PurF (purF) gene, partial cds	DQ234429	446	78343	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium boum strain LMG 10736 ClpC (clpC) gene, partial cds	DQ238033	561	78343	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium boum DnaJ1 (dnaJ1) gene, partial cds	DQ256119	395	78343	*
[Ref.: #8808]	INSDC (WGS)	Bifidobacterium boum DSM 20432, whole genome shotgun sequencing project	JHWO00000000	26	1410645

Availability in culture collectionsStrain availability

[Ref.: #8808]

Culture collection no.

DSM 20432, ATCC 27917

[Ref.: #8808]

Strain history

<- ATCC <- V. Scardovi, RU917

[Ref.: #20218]

Associated Passport(s) in StrainInfo

5422, 5419

References

#8808

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20432

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

* These References are textmined

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