Bifidobacterium boum (DSM 102857, WCA-130-P53-4B)

Name: Bifidobacterium boum (DSM 102857, WCA-130-P53-4B)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158888

Type strain

Strain Designation WCA-130-P53-4B

Culture col. no. DSM 102857 WCA-130-P53-4B

NCBI tax ID(s) 78343

Special Collections DSMZ Pig DZIF

History <- D. Wylensek, TU Munich, Freising-Weihenstephan, Germany; WCA-130-P53-4B

Links

Bifidobacterium boum WCA-130-P53-4B is a bacterium that was isolated from feces; pig, 25 month old, genotype: P53R167H/+ referring to protein p53.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 405288

DSM 102857

@ref 20215

Last LPSN update 2026-02-09 11:38:27

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Bifidobacteriales

Family Bifidobacteriaceae

Genus Bifidobacterium

Species Bifidobacterium boum

Full scientific name Bifidobacterium boum Scardovi et al. 1979 (Approved Lists 1980)

BacDive ID	Other strains from **Bifidobacterium boum** (2)	Type strain
1694	B. boum RU917, DSM 20432, ATCC 27917, JCM 1211, BCRC ... (type strain)
161179	B. boum JCM 11659, CGMCC 1.3004

Morphology

Cell morphology

@ref	Gram stain	Confidence	Motility
125439	positive	94.1
125438		93

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
65710	BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58)		Medium recipe at MediaDive	Name: BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58) Composition: Glucose 10.0 g/l Casein peptone 10.0 g/l Bacto Soytone 5.0 g/l Meat extract 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l MnSO4 x H2O 0.05 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Tween 80 Resazurin Distilled water
65710	WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339)		Medium recipe at MediaDive	Name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) Composition: dehydrated Wilkins-Chalgren medium 33.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
65710	positive	growth	37

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		90.2
125438		93.266

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Host	#Mammals	#Suidae (Pig,Swine)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
65710	feces; pig, 25 month old, genotype: P53R167H/+ referring to protein p53	Kranzberg (Bavaria)	Germany	DEU	Europe

Taxonmaps

69479

Global distribution of 16S sequence MN537459 (>99% sequence identity) for Bifidobacterium boum subclade from Microbeatlas

Aquatic Samples	200
Soil Samples	313
Animal Samples	18077
Plant Samples	125
Total Samples	18715

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
65710	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM1284408v1 assembly for Bifidobacterium boum WCA-130-P53-4B	contig	GCA_012844085	78343.10	78343	74.25

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
65710	Bifidobacterium boum strain DSM 102857 16S ribosomal RNA gene, partial sequence	MN537459	1487		78343

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Bifidobacterium boum WCA-130-P53-4B
NCBI: GCA_012844085

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	90.20	no
125439	motility	BacteriaNetⓘ	no	83.90	no
125439	gram_stain	BacteriaNetⓘ	positive	94.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	microaerophile	79.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Bifidobacterium boum WCA-130-P53-4B
NCBI: GCA_012844085.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	85.93	no
125438	anaerobic	anaerobicⓘ	yes	86.04	no
125438	aerobic	aerobicⓘ	no	93.78	no
125438	spore-forming	spore-formingⓘ	no	93.27	no
125438	thermophilic	thermophileⓘ	no	92.99	yes
125438	flagellated	motile2+ⓘ	no	93.00	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65710	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 102857
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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