Name: Thermococcus fumicolans ST557
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 16879

Type strain:

Species: Thermococcus fumicolans

Strain Designation: ST557

Culture col. no.: DSM 12820, CIP 104690, JCM 10128

Strain history: CIP 104690 <-- A. Godfroy ST557.

NCBI tax ID(s): 46540 (species)

SI-ID 49368

DSM 12820, CIP 104690, JCM 10128

Special Collections

Section

Thermococcus fumicolans ST557 is an anaerobe archaeon that was isolated from deep-sea hydrothermal vent.

anaerobe
16S sequence
Archaea

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Thermococci*
	Order	*Thermococcales*
	Family	*Thermococcaceae*
	Genus	*Thermococcus*
	Species	**Thermococcus fumicolans**
	Full Scientific Name (LPSN)	Thermococcus fumicolans Godfroy and Meunier 1996

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4835]

Culture medium

MARINE THERMOCOCCUS MEDIUM (DSMZ Medium 760)

[Ref.: #4835]

Culture medium growth

[Ref.: #4835]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4835]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #4835]			growth	85 °C
[Ref.: #67770]			growth	85 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #4835]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4835]	Sample type/isolated from	deep-sea hydrothermal vent
[Ref.: #4835]	Geographic location (country and/or sea, region)	North Fiji Basin
[Ref.: #4835]	Country	Fiji
[Ref.: #4835]	Country ISO 3 Code	FJI
[Ref.: #4835]	Continent	Australia and Oceania

[Ref.: #67770]	Sample type/isolated from	Deep-sea hydrothermal vent in the Northern Fiji Basin
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Hydrothermal vent
#Environmental	#Aquatic	#Marine
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4835]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #4835]	T.fumicolans 16S ribosomal RNA	Z70250	1309	GenBank ENA	46540 tax ID
[Ref.: #4835]	Thermococcus fumicolans strain ST557 16S ribosomal RNA gene, partial sequence	AY099176	1441	GenBank ENA	46540 tax ID
[Ref.: #20218]	Thermococcus fumicolans strain ST557 16S-23S ribosomal RNA intergenic spacer region, complete sequence	AY099212	183	GenBank ENA	46540 tax ID	*
[Ref.: #20218]	Thermococcus fumicolans gene for 16S rRNA, partial sequence, strain:JCM 10128	AB055122	1422	GenBank ENA	46540 tax ID	*
[Ref.: #20218]	Thermococcus fumicolans gene for 16S rRNA, partial sequence, strain:ST557	AB055128	1422	GenBank ENA	46540 tax ID	*

[Ref.: #4835]	GC-content	54 mol%	high performance liquid chromatography (HPLC)
[Ref.: #4835]	GC-content	55 mol%	thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #4835]

Culture collection no.

DSM 12820, CIP 104690, JCM 10128

[Ref.: #85887]

SI-ID 49368

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Thermococcus fumicolans sp. nov., a new hyperthermophilic archaeon isolated from a deep-sea hydrothermal vent in the north Fiji Basin.	Godfroy A, Meunier JR, Guezennec J, Lesongeur F, Raguenes G, Rimbault A, Barbier G	Int J Syst Bacteriol	10.1099/00207713-46-4-1113	1996	*

References

#4835

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 12820

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#85887

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID49368.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Thermococcus fumicolans in external resources:
SILVA
BRENDA
PANGAEA
GBIF