Strain identifier
BacDive ID: 16879
Type strain: 
Species: Thermococcus fumicolans
Strain Designation: ST557
Strain history: CIP 104690 <-- A. Godfroy ST557.
NCBI tax ID(s): 46540 (species)
version 9 (current version)
General
@ref: 4835
BacDive-ID: 16879
DSM-Number: 12820
keywords: 16S sequence, Archaea, anaerobe
description: Thermococcus fumicolans ST557 is an anaerobe archaeon that was isolated from deep-sea hydrothermal vent.
NCBI tax id
- NCBI tax id: 46540
- Matching level: species
strain history
| @ref | history |
|---|---|
| 4835 | <- JCM <- CIP <- A. Godfroy (the strain designation CIP 104680 appears to be a printing error) |
| 67770 | CIP 104690 <-- A. Godfroy ST557. |
doi: 10.13145/bacdive16879.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Thermococci
- order: Thermococcales
- family: Thermococcaceae
- genus: Thermococcus
- species: Thermococcus fumicolans
- full scientific name: Thermococcus fumicolans Godfroy and Meunier 1996
@ref: 4835
domain: Archaea
phylum: Euryarchaeota
class: Thermococci
order: Thermococcales
family: Thermococcaceae
genus: Thermococcus
species: Thermococcus fumicolans
full scientific name: Thermococcus fumicolans Godfroy and Meunier 1996
strain designation: ST557
type strain: yes
Culture and growth conditions
culture medium
- @ref: 4835
- name: MARINE THERMOCOCCUS MEDIUM (DSMZ Medium 760)
- growth: yes
- link: https://mediadive.dsmz.de/medium/760
- composition: Name: MARINE THERMOCOCCUS MEDIUM (DSMZ Medium 760) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 4835 | positive | growth | 85 |
| 67770 | positive | growth | 85 |
Physiology and metabolism
oxygen tolerance
- @ref: 4835
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 4835 | deep-sea hydrothermal vent | North Fiji Basin | Fiji | FJI | Australia and Oceania |
| 67770 | Deep-sea hydrothermal vent in the Northern Fiji Basin |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Hydrothermal vent |
| #Environmental | #Aquatic | #Marine |
| #Condition | #Thermophilic (>45°C) |
Safety information
risk assessment
- @ref: 4835
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Thermococcus fumicolans gene for 16S rRNA, partial sequence, strain:JCM 10128 | AB055122 | 1422 | nuccore | 46540 |
| 20218 | Thermococcus fumicolans gene for 16S rRNA, partial sequence, strain:ST557 | AB055128 | 1422 | nuccore | 46540 |
| 20218 | Thermococcus fumicolans strain ST557 16S-23S ribosomal RNA intergenic spacer region, complete sequence | AY099212 | 183 | nuccore | 46540 |
| 4835 | T.fumicolans 16S ribosomal RNA | Z70250 | 1309 | nuccore | 46540 |
| 4835 | Thermococcus fumicolans strain ST557 16S ribosomal RNA gene, partial sequence | AY099176 | 1441 | nuccore | 46540 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 4835 | 54 | high performance liquid chromatography (HPLC) |
| 4835 | 55 | thermal denaturation, midpoint method (Tm) |
External links
@ref: 4835
culture collection no.: DSM 12820, CIP 104690, JCM 10128
straininfo link
- @ref: 85887
- straininfo: 49368
literature
- topic: Phylogeny
- Pubmed-ID: 8863444
- title: Thermococcus fumicolans sp. nov., a new hyperthermophilic archaeon isolated from a deep-sea hydrothermal vent in the north Fiji Basin.
- authors: Godfroy A, Meunier JR, Guezennec J, Lesongeur F, Raguenes G, Rimbault A, Barbier G
- journal: Int J Syst Bacteriol
- DOI: 10.1099/00207713-46-4-1113
- year: 1996
- mesh: Archaea/drug effects/growth & development/*isolation & purification, Base Sequence, DNA, Bacterial/analysis, Lipids/analysis, Molecular Sequence Data, RNA, Ribosomal, 16S/chemistry, Temperature, *Water Microbiology
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 4835 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 12820) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-12820 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 85887 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID49368.1 | StrainInfo: A central database for resolving microbial strain identifiers |