Name: Thermococcus zilligii AN1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 16878

Type strain:

Species: Thermococcus zilligii

Strain Designation: AN1

Culture col. no.: DSM 2770, JCM 10554, ATCC 700529

Strain history: DSM 2770 <-- H. Morgan AN1.

NCBI tax ID(s): 54076 (species)

SI-ID 43983

ATCC 700529, DSM 2770, JCM 10554

Special Collections

DSMZ
JCM

Section

When using BacDive for research please cite our paper

Thermococcus zilligii AN1 is an anaerobe, thermophilic archaeon that was isolated from anaerobic mud from alkaline hot spring.

anaerobe
thermophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Archaea*
	Phylum	*Methanobacteriota*
	Class	*Thermococci*
	Order	*Thermococcales*
	Family	*Thermococcaceae*
	Genus	*Thermococcus*
	Species	**Thermococcus zilligii**
	Full Scientific Name (LPSN)	Thermococcus zilligii Ronimus et al. 1999

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1216]

Culture medium

AN1 MEDIUM (DSMZ Medium 376)

[Ref.: #1216]

Culture medium growth

[Ref.: #1216]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1216]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #1216]			growth	75 °C
[Ref.: #67770]			growth	75 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #1216]	Oxygen tolerance	anaerobe
[Ref.: #125439]	Oxygen tolerance	anaerobe Confidence in %99.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1216]	Sample type/isolated from	anaerobic mud from alkaline hot spring
[Ref.: #1216]	Geographic location (country and/or sea, region)	Rotorua, Kuirau Park
[Ref.: #1216]	Country	New Zealand
[Ref.: #1216]	Country ISO 3 Code	NZL
[Ref.: #1216]	Continent	Australia and Oceania

[Ref.: #67770]	Sample type/isolated from	Thermal pool at Kuirau Park
[Ref.: #67770]	Geographic location (country and/or sea, region)	Rotorua
[Ref.: #67770]	Country	New Zealand
[Ref.: #67770]	Country ISO 3 Code	NZL
[Ref.: #67770]	Continent	Australia and Oceania
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Mud (Sludge)
#Condition	#Alkaline	-
#Condition	#Anoxic (anaerobic)	-
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence U76534 (>99% sequence identity) for Thermococcus from Microbeatlas

Aquatic Samples	41
Soil Samples
Animal Samples
Plant Samples
Total Samples	41

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1216]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #1216]	Thermococcus sp. AN1 16S ribosomal RNA gene, partial sequence	U76534	1451	GenBank ENA	1151117 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Thermococcus zilligii AN1	GCA_000258515	contig	GenBank ENA	1151117 tax ID
[Ref.: #66792]	Thermococcus zilligii AN1	2547132157	draft	JGI IMG/M	1151117 tax ID	*
[Ref.: #66792]	Thermococcus zilligii AN1	1151117.4	wgs	PATRIC	1151117 tax ID	*

[Ref.: #67770]	GC-content	54.48 mol%	genome sequence analysis
[Ref.: #67770]	GC-content	46.2 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Thermococcus zilligii AN1 NCBI: GCA_000258515
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	anaerobe	99.6
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	51.7
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	64
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	68.2

Availability in culture collections External links

[Ref.: #1216]

Culture collection no.

DSM 2770, JCM 10554, ATCC 700529

[Ref.: #85886]

SI-ID 43983

Literature:

Topic	Title	Authors	Journal	DOI	Year
Enzymology	The first description of an archaeal hemicellulase: the xylanase from Thermococcus zilligii strain AN1.	Uhl AM, Daniel RM	Extremophiles	10.1007/s007920050126	1999	*
Phylogeny	The phylogenetic position of the Thermococcus isolate AN1 based on 16S rRNA gene sequence analysis: a proposal that AN1 represents a new species, Thermococcus zilligii sp. nov.	Ronimus RS, Reysenbach A, Musgrave DR, Morgan HW	Arch Microbiol	10.1007/s002030050495	1997	*

References

#1216

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 2770

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#85886

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID43983.1 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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