Name: Stygiolobus azoricus FC6
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 16648

Type strain:

Species: Stygiolobus azoricus

Strain Designation: FC6

Culture col. no.: DSM 6296, JCM 9021

Strain history: DSM 6296 <-- A. Segerer and K. O. Stetter FC6.

NCBI tax ID(s): 1313299 (strain), 41675 (species)

SI-ID 48145

DSM 6296, JCM 9021

Special Collections

DSMZ
JCM

Section

Stygiolobus azoricus FC6 is an anaerobe, spore-forming, Gram-negative archaeon that was isolated from hot spring.

Gram-negative
spore-forming
anaerobe
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Thermoproteota*
	Class	*Thermoprotei*
	Order	*Sulfolobales*
	Family	*Sulfolobaceae*
	Genus	*Stygiolobus*
	Species	**Stygiolobus azoricus**
	Full Scientific Name (LPSN)	Stygiolobus azoricus Segerer et al. 1991

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Motility	no Confidence in %91

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2580]

Culture medium

ACIDIANUS MEDIUM (ANAEROBIC) (DSMZ Medium 358a)

[Ref.: #2580]

Culture medium growth

[Ref.: #2580]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2580]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #2580]			growth	80 °C
[Ref.: #67770]			growth	80 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #2580]

Oxygen tolerance

anaerobe

[Ref.: #69480]	Ability of spore formation	no Confidence in %90.621
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #2580]	Sample type/isolated from	hot spring
[Ref.: #2580]	Geographic location (country and/or sea, region)	Sao Miguel island, Furnas
[Ref.: #2580]	Country	Azores
[Ref.: #2580]	Country ISO 3 Code	PRT

[Ref.: #67770]	Sample type/isolated from	Furnas Caldeiras
[Ref.: #67770]	Geographic location (country and/or sea, region)	São Miguel Island
[Ref.: #67770]	Country	Azores
[Ref.: #67770]	Country ISO 3 Code	PRT
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Thermal spring
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2580]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #2580]	Stygiolobus azoricus 16S rRNA gene, almost full-length sequence	D85520	1457	GenBank ENA	41675 tax ID
[Ref.: #20218]	S.azoricus DNA for 16S ribosomal RNA gene	X90480	1416	GenBank ENA	41675 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Stygiolobus azoricus FC6	GCA_009729035	complete	GenBank ENA	41675 tax ID	*

[Ref.: #2580]	GC-content	38.0 mol%
[Ref.: #67770]	GC-content	38 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Stygiolobus azoricus FC6 NCBI: GCA_009729035.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Stygiolobus azoricus FC6 NCBI: GCA_009729035.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	75.636	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	82.357	yes
[Ref.: #69480]	aerobic	aerobicⓘ	no	74.824	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	90.621	no
[Ref.: #69480]	thermophilic	thermophileⓘ	yes	80.806	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	91	no

Availability in culture collections External links

[Ref.: #2580]

Culture collection no.

DSM 6296, JCM 9021

[Ref.: #85669]

SI-ID 48145

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Stygiolobus caldivivus sp. nov., a facultatively anaerobic hyperthermophilic archaeon isolated from the Unzen hot spring in Japan.	Sakai HD, Nakamura K, Kurosawa N	Int J Syst Evol Microbiol	10.1099/ijsem.0.005486	2022	*

References

#2580

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 6296

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85669

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID48145.1 )

* These data were automatically processed and therefore are not curated

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