Name: Treponema denticola JCM 8225
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 165774

Type strain:

Species: Treponema denticola

Culture col. no.: JCM 8225, ATCC 33520, CIP 103917

Strain history: T. Mitsuoka <-- ATCC 33520 <-- R. K. Nauman W.

NCBI tax ID(s): 999428 (strain), 158 (species)

SI-ID 92963

ATCC 33520, CIP 103917, JCM 8225

Special Collections

Other strains from Treponema denticola

Section

Treponema denticola JCM 8225 is an anaerobe, Gram-negative bacterium that was isolated from Human oral cavity.

Gram-negative
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Spirochaetota*
	Class	*Spirochaetia*
	Order	*Spirochaetales*
	Family	*Treponemataceae*
	Genus	*Treponema*
	Species	**Treponema denticola**
	Full Scientific Name (LPSN)	Treponema denticola (ex Flügge 1886) Chan et al. 1993

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

anaerobe Confidence in %91.773

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Human oral cavity
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AB910736 (>99% sequence identity) for Treponema denticola from Microbeatlas

Aquatic Samples	521
Soil Samples	517
Animal Samples	28134
Plant Samples	223
Total Samples	29395

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Treponema denticola II:11:33520 16S ribosomal RNA gene, complete sequence	M71236	1509	GenBank ENA	83342 tax ID
[Ref.: #67770]	Treponema denticola gene for 16S ribosomal RNA, partial sequence	AB910736	1506	GenBank ENA	158 tax ID
[Ref.: #124043]	Treponema denticola genomic RNA for 16S ribosomal RNA.	D85438	1376	GenBank ENA	999428 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Treponema denticola ATCC 33520	GCA_000338615	scaffold	GenBank ENA	999428 tax ID
[Ref.: #66792]	Treponema denticola ATCC 33520	999428.3	wgs	PATRIC	999428 tax ID	*
[Ref.: #66792]	Treponema denticola ATCC 33520	2558860188	draft	JGI IMG/M	999428 tax ID	*

[Ref.: #67770]

GC-content

38 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Treponema denticola ATCC 33520 PATRIC: 999428.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Treponema denticola ATCC 33520 PATRIC: 999428.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	84.162	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	91.773	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	96.293	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	77.862	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	87.946	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	58.065	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 8225, ATCC 33520, CIP 103917

[Ref.: #114599]

SI-ID 92963

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	The influence of cholesterol, progesterone, 4-androstenedione and testosterone on the growth of Treponema denticola ATCC 33520 in batch cultures.	Clark DT, Soory M	Anaerobe	10.1016/j.anaerobe.2006.08.002	2006	*
Pathogenicity	Complementation of a Treponema denticola flgE mutant with a novel coumermycin A1-resistant T. denticola shuttle vector system.	Chi B, Limberger RJ, Kuramitsu HK	Infect Immun	10.1128/IAI.70.4.2233-2237.2002	2002	*
Metabolism	[Collagen-binding proteins of human oral spirochetes].	Li M, Liu Z, Umemoto T	Zhonghua Kou Qiang Yi Xue Za Zhi		1999	*
Cultivation	Environmental effects on the growth and proteolysis of Treponema denticola ATCC 33520.	Mikx FH	Oral Microbiol Immunol	10.1111/j.1399-302x.1997.tb00387.x	1997	*
Enzymology	Adherence of human oral spirochetes by collagen-binding proteins.	Umemoto T, Li M, Namikawa I	Microbiol Immunol	10.1111/j.1348-0421.1997.tb01950.x	1997	*
Phylogeny	Identity of 1:2:1 and 2:4:2 subgingival spirochetes by DNA hybridization.	Olsen I, Fiehn NE, Johnson JL	Oral Microbiol Immunol	10.1111/j.1399-302x.1995.tb00170.x	1995	*
Enzymology	Physical map of the Treponema denticola circular chromosome.	MacDougall J, Saint Girons I	J Bacteriol	10.1128/jb.177.7.1805-1811.1995	1995	*
Pathogenicity	Distribution and characterization of plasmids in oral anaerobic spirochetes.	Caudry S, Klitorinos A, Gharbia SE, Pssara N, Siboo R, Keng T, Chan EC	Oral Microbiol Immunol	10.1111/j.1399-302x.1995.tb00111.x	1995	*
Metabolism	Effect of iron regulation on expression and hemin-binding function of outer-sheath proteins from Treponema denticola.	Chu L, Song M, Holt SC	Microb Pathog	10.1006/mpat.1994.1033	1994	*
Enzymology	Outer membrane antigens of oral Treponema species.	Tall BD, Nauman RK	J Med Microbiol	10.1099/00222615-40-1-62	1994	*
Metabolism	Fibronectin-binding proteins of a human oral spirochete Treponema denticola.	Umemoto T, Nakatani Y, Nakamura Y, Namikawa I	Microbiol Immunol	10.1111/j.1348-0421.1993.tb03182.x	1993	*
Enzymology	Cloning and expression of the aspartate carbamoyltransferase gene from Treponema denticola.	Ishihara K, Ishihara M, Takazoe I, Okuda K	Appl Environ Microbiol	10.1128/aem.58.10.3399-3403.1992	1992	*
Cultivation	Cell-bound peptidase activities of Treponema denticola ATCC 33520 in continuous culture.	Mikx FH, Jacobs F, Satumalay C	J Gen Microbiol	10.1099/00221287-138-9-1837	1992	*
Cultivation	Hemagglutination activity of Treponema denticola grown in serum-free medium in continuous culture.	Mikx FH, Keulers RA	Infect Immun	10.1128/iai.60.5.1761-1766.1992	1992	*
Enzymology	Cloning and expression of protease genes from Treponema denticola in Escherichia coli.	MacDougall JH, Beighton D, Russell RR	Oral Microbiol Immunol	10.1111/j.1399-302x.1991.tb00490.x	1991	*
Phylogeny	Characterization of monoclonal antibodies to two Treponema denticola serotypes by the indirect fluorescent-antibody assay.	Kearns EA, Simonson LG, Schutt RW, Johnson MJ, Neil LC	Microbios		1991	*
Metabolism	Tip-oriented adherence of Treponema denticola to fibronectin.	Dawson JR, Ellen RP	Infect Immun	10.1128/iai.58.12.3924-3928.1990	1990	*
Enzymology	Antigenic and structural analysis of Treponema denticola.	Cockayne A, Sanger R, Ivic A, Strugnell RA, MacDougall JH, Russell RR, Penn CW	J Gen Microbiol	10.1099/00221287-135-12-3209	1989	*
Enzymology	A major antigen on the outer envelope of a human oral spirochete, Treponema denticola.	Umemoto T, Namikawa I, Suido H, Asai S	Infect Immun	10.1128/iai.57.8.2470-2474.1989	1989	*
Metabolism	Dentilisin involvement in coaggregation between Treponema denticola and Tannerella forsythia.	Sano Y, Okamoto-Shibayama K, Tanaka K, Ito R, Shintani S, Yakushiji M, Ishihara K	Anaerobe	10.1016/j.anaerobe.2014.08.008	2014	*
Enzymology	Disruption of a type II endonuclease (TDE0911) enables Treponema denticola ATCC 35405 to accept an unmethylated shuttle vector.	Bian J, Li C	Appl Environ Microbiol	10.1128/AEM.00417-11	2011	*
Metabolism	Steroid 5alpha-reductase activity of Treponema denticola.	Clark DT, Soory M	Oral Microbiol Immunol	10.1111/j.1399-302X.2007.00364.x	2007	*
Metabolism	Multiple functions of the leucine-rich repeat protein LrrA of Treponema denticola.	Ikegami A, Honma K, Sharma A, Kuramitsu HK	Infect Immun	10.1128/IAI.72.8.4619-4627.2004	2004	*
Enzymology	Multiple forms of the major phenylalanine specific protease in Treponema denticola.	Rosen G, Naor R, Sela MN	J Periodontal Res	10.1111/j.1600-0765.1999.tb02253.x	1999	*
Pathogenicity	Characterization of hemolysis and hemoxidation activities by Treponema denticola.	Chu L, Kennell W, Holt SC	Microb Pathog	10.1006/mpat.1994.1019	1994	*
Pathogenicity	Common and specific antigens of several treponemes detected by polyclonal antisera against major cellular proteins.	Nakamura Y, Umemoto T, Nakatani Y, Namikawa I, Wadood A	Oral Microbiol Immunol	10.1111/j.1399-302x.1993.tb00576.x	1993	*
Enzymology	Antigenic behaviors of two axial flagellar proteins detected in Treponema denticola.	Umemoto T, Wadood A, Nakamura Y, Nakatani Y, Namikawa I	Microbiol Immunol	10.1111/j.1348-0421.1993.tb03194.x	1993	*
	Effects of a mixed infection with Porphyromonas gingivalis and Treponema denticola on abscess formation and immune responses in mice.	Washizu M, Ishihara K, Honma K, Okuda K	Bull Tokyo Dent Coll	10.2209/tdcpublication.44.141	2003	*
	Homology among Treponema denticola plasmids.	Reedy E, Simonson L, Zablen L	Oral Microbiol Immunol	10.1111/j.1399-302x.1994.tb00076.x	1994	*
	Involvement of treponemal surface-located protein and carbohydrate moieties in the attachment of Treponema denticola ATCC 33520 to cultured rat palatal epithelial cells.	Keulers RA, Maltha JC, Mikx FH, Wolters-Lutgerhorst JM	Oral Microbiol Immunol	10.1111/j.1399-302x.1993.tb00566.x	1993	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#114599

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID92963.1 )

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

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Treponema denticola ATCC 33520

Treponema denticola ATCC 33520

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