Strain identifier

BacDive ID: 165774

Type strain: No

Species: Treponema denticola

Strain history: T. Mitsuoka <-- ATCC 33520 <-- R. K. Nauman W.

NCBI tax ID(s): 999428 (strain), 158 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
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General

@ref: 67770

BacDive-ID: 165774

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, Gram-negative

description: Treponema denticola JCM 8225 is an anaerobe, Gram-negative bacterium that was isolated from Human oral cavity.

NCBI tax id

NCBI tax idMatching level
999428strain
158species

strain history

  • @ref: 67770
  • history: T. Mitsuoka <-- ATCC 33520 <-- R. K. Nauman W.

doi: 10.13145/bacdive165774.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/spirochaetota
  • domain: Bacteria
  • phylum: Spirochaetota
  • class: Spirochaetia
  • order: Spirochaetales
  • family: Treponemataceae
  • genus: Treponema
  • species: Treponema denticola
  • full scientific name: Treponema denticola (ex Flügge 1886) Chan et al. 1993

@ref: 67770

domain: Bacteria

phylum: Spirochaetes

class: Spirochaetia

order: Spirochaetales

family: Treponemataceae

genus: Treponema

species: Treponema denticola

full scientific name: Treponema denticola Chan et al. 1993

type strain: no

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 37

Physiology and metabolism

oxygen tolerance

  • @ref: 69480
  • oxygen tolerance: anaerobe
  • confidence: 91.773

spore formation

  • @ref: 69481
  • spore formation: no
  • confidence: 100

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Human oral cavity

taxonmaps

  • @ref: 69479
  • File name: preview.99_1355.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_67;96_784;97_913;98_1070;99_1355&stattab=map
  • Last taxonomy: Treponema denticola
  • 16S sequence: AB910736
  • Sequence Identity:
  • Total samples: 29395
  • soil counts: 517
  • aquatic counts: 521
  • animal counts: 28134
  • plant counts: 223

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
67770Treponema denticola gene for 16S ribosomal RNA, partial sequenceAB9107361506nuccore158
67770Treponema denticola II:11:33520 16S ribosomal RNA gene, complete sequenceM712361509nuccore83342
124043Treponema denticola genomic RNA for 16S ribosomal RNA.D854381376nuccore999428

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Treponema denticola ATCC 33520999428.3wgspatric999428
66792Treponema denticola ATCC 335202558860188draftimg999428
67770Treponema denticola ATCC 33520GCA_000338615scaffoldncbi999428

GC content

  • @ref: 67770
  • GC-content: 38
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69481spore-formingspore-formingAbility to form endo- or exosporesno100no
69480gram-positivegram-positivePositive reaction to Gram-stainingno84.162no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)yes91.773no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no96.293no
69480spore-formingspore-formingAbility to form endo- or exosporesno77.862no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno87.946yes
69480flagellatedmotile2+Ability to perform flagellated movementyes58.065no

External links

@ref: 67770

culture collection no.: JCM 8225, ATCC 33520, CIP 103917

straininfo link

  • @ref: 114599
  • straininfo: 92963

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Cultivation1402787Cell-bound peptidase activities of Treponema denticola ATCC 33520 in continuous culture.Mikx FH, Jacobs F, Satumalay CJ Gen Microbiol10.1099/00221287-138-9-18371992Aminopeptidases/*metabolism, Culture Media, Hydrogen-Ion Concentration, Treponema/*enzymologyMetabolism
Enzymology1444372Cloning and expression of the aspartate carbamoyltransferase gene from Treponema denticola.Ishihara K, Ishihara M, Takazoe I, Okuda KAppl Environ Microbiol10.1128/aem.58.10.3399-3403.19921992Amino Acid Sequence, Aspartate Carbamoyltransferase/*genetics, Base Sequence, *Cloning, Molecular, Escherichia coli/enzymology/genetics, *Gene Expression Regulation, Bacterial, Molecular Sequence Data, Promoter Regions, Genetic, Treponema/enzymology/*geneticsGenetics
Cultivation1563762Hemagglutination activity of Treponema denticola grown in serum-free medium in continuous culture.Mikx FH, Keulers RAInfect Immun10.1128/iai.60.5.1761-1766.19921992Animals, Bacterial Adhesion, Blood Physiological Phenomena, Cattle, Culture Media, *Hemagglutination, Hemagglutination Inhibition Tests, Horses, Humans, Rabbits, Treponema/*physiologyPathogenicity
Enzymology1840314Cloning and expression of protease genes from Treponema denticola in Escherichia coli.MacDougall JH, Beighton D, Russell RROral Microbiol Immunol10.1111/j.1399-302x.1991.tb00490.x1991Aminopeptidases/*genetics, Bacterial Proteins/genetics, Bacteriophage lambda, *Cloning, Molecular, DNA, Bacterial/genetics, Enzyme Activation, Escherichia coli/*enzymology, Gene Library, Genetic Vectors, Serine Endopeptidases/*genetics, Treponema/*enzymology/genetics
Phylogeny2030646Characterization of monoclonal antibodies to two Treponema denticola serotypes by the indirect fluorescent-antibody assay.Kearns EA, Simonson LG, Schutt RW, Johnson MJ, Neil LCMicrobios1991Antibodies, Bacterial/*immunology, Antibodies, Monoclonal/*immunology, Antibody Specificity, Cross Reactions, Enzyme-Linked Immunosorbent Assay, Fluorescent Antibody Technique, Humans, Periodontal Diseases/*microbiology, Serotyping, Species Specificity, Treponema/*immunology/isolation & purificationPathogenicity
Metabolism2254019Tip-oriented adherence of Treponema denticola to fibronectin.Dawson JR, Ellen RPInfect Immun10.1128/iai.58.12.3924-3928.19901990*Bacterial Adhesion, Collagen/metabolism, Fibronectins/*metabolism, Humans, Laminin/metabolism, Temperature, Treponema/*physiologyPathogenicity
Enzymology2636257Antigenic and structural analysis of Treponema denticola.Cockayne A, Sanger R, Ivic A, Strugnell RA, MacDougall JH, Russell RR, Penn CWJ Gen Microbiol10.1099/00221287-135-12-32091989Antigens, Bacterial/*analysis, Bacterial Proteins/immunology, Blotting, Western, Electrophoresis, Polyacrylamide Gel, Flagella/ultrastructure, Membrane Proteins/immunology, Microscopy, Electron, Molecular Weight, Peptides/analysis, Subcellular Fractions/analysis/ultrastructure, Treponema/*immunology/ultrastructure
Enzymology2744855A major antigen on the outer envelope of a human oral spirochete, Treponema denticola.Umemoto T, Namikawa I, Suido H, Asai SInfect Immun10.1128/iai.57.8.2470-2474.19891989Agglutination Tests, Antibodies, Bacterial, Antibodies, Monoclonal, Antibody Specificity, Antigens, Bacterial/immunology/*isolation & purification, Antigens, Surface/immunology/*isolation & purification, Humans, Immunohistochemistry, Microscopy, Electron, Periodontal Diseases/microbiology/pathology, Treponema/*immunology/ultrastructurePhylogeny
Pathogenicity7644276Distribution and characterization of plasmids in oral anaerobic spirochetes.Caudry S, Klitorinos A, Gharbia SE, Pssara N, Siboo R, Keng T, Chan ECOral Microbiol Immunol10.1111/j.1399-302x.1995.tb00111.x1995Bacterial Typing Techniques, Base Sequence, Blotting, Southern, DNA Primers, DNA, Bacterial/*analysis, Fluorescent Antibody Technique, Humans, Molecular Sequence Data, Mouth/*microbiology, Plasmids/*analysis, Polymerase Chain Reaction, Polymorphism, Restriction Fragment Length, Restriction Mapping, Sequence Homology, Nucleic Acid, Treponema/*classification/*geneticsGenetics
7808774Homology among Treponema denticola plasmids.Reedy E, Simonson L, Zablen LOral Microbiol Immunol10.1111/j.1399-302x.1994.tb00076.x1994Blotting, Southern, DNA, Bacterial/*genetics, DNA, Single-Stranded/genetics, Plasmids/genetics, Restriction Mapping, Sequence Homology, Nucleic Acid, Treponema/*genetics
Metabolism7815916Effect of iron regulation on expression and hemin-binding function of outer-sheath proteins from Treponema denticola.Chu L, Song M, Holt SCMicrob Pathog10.1006/mpat.1994.103319942,2'-Dipyridyl/pharmacology, Amino Acid Sequence, Animals, Antibodies/immunology, Bacterial Outer Membrane Proteins/genetics/immunology/isolation & purification/*metabolism, Carrier Proteins/genetics/immunology/isolation & purification/*metabolism, Chelating Agents/*pharmacology, Culture Media/pharmacology, Edetic Acid/*analogs & derivatives/pharmacology, Gene Expression Regulation, Bacterial/*drug effects, Heme-Binding Proteins, Hemeproteins/genetics/immunology/isolation & purification/*metabolism, Hemin/*metabolism, Iron/*pharmacology, Iron-Binding Proteins, Molecular Sequence Data, Protein Binding/drug effects, Rabbits, Sequence Homology, Amino Acid, Transferrin-Binding Proteins, Treponema/*drug effects/geneticsEnzymology
Enzymology7896704Physical map of the Treponema denticola circular chromosome.MacDougall J, Saint Girons IJ Bacteriol10.1128/jb.177.7.1805-1811.19951995Base Sequence, *Chromosome Mapping, *Chromosomes, Bacterial, Electrophoresis, Gel, Pulsed-Field, Molecular Sequence Data, Nucleic Acid Hybridization, RNA, Ribosomal/genetics, Treponema/*geneticsGenetics
Pathogenicity8090077Characterization of hemolysis and hemoxidation activities by Treponema denticola.Chu L, Kennell W, Holt SCMicrob Pathog10.1006/mpat.1994.10191994Erythrocytes/*metabolism/ultrastructure, Hemolysis/drug effects/*physiology, Humans, In Vitro Techniques, Iron/physiology, Oxidation-Reduction, Sulfur/physiology, Treponema/drug effects/*physiologyMetabolism
8247611Involvement of treponemal surface-located protein and carbohydrate moieties in the attachment of Treponema denticola ATCC 33520 to cultured rat palatal epithelial cells.Keulers RA, Maltha JC, Mikx FH, Wolters-Lutgerhorst JMOral Microbiol Immunol10.1111/j.1399-302x.1993.tb00566.x1993Analysis of Variance, Animals, Bacterial Adhesion/immunology/*physiology, Bacterial Proteins/*physiology, Cell Line, Epithelial Cells, Epithelium/microbiology, Membrane Glycoproteins/*physiology, Polysaccharides, Bacterial/*physiology, Rats, Rats, Sprague-Dawley, Treponema/*physiology
Pathogenicity8265202Common and specific antigens of several treponemes detected by polyclonal antisera against major cellular proteins.Nakamura Y, Umemoto T, Nakatani Y, Namikawa I, Wadood AOral Microbiol Immunol10.1111/j.1399-302x.1993.tb00576.x1993Animals, Antibodies, Bacterial, Antigens, Bacterial/*analysis, Bacterial Outer Membrane Proteins/analysis, Bacterial Proteins/*analysis, Flagella/immunology, Humans, Immunoblotting, Mice, Microscopy, Immunoelectron, Treponema/*immunology/ultrastructure
Enzymology8289216Outer membrane antigens of oral Treponema species.Tall BD, Nauman RKJ Med Microbiol10.1099/00222615-40-1-621994Adsorption, Animals, Antibodies, Bacterial/immunology, Antigens, Bacterial/*analysis/immunology, Bacterial Outer Membrane Proteins/*analysis/immunology, Cell Membrane/immunology, Centrifugation, Density Gradient, Electrophoresis, Polyacrylamide Gel, Humans, Immunoblotting, Immunohistochemistry, Microscopy, Electron, Mouth/microbiology, Treponema/*immunology/ultrastructurePathogenicity
Metabolism8474361Fibronectin-binding proteins of a human oral spirochete Treponema denticola.Umemoto T, Nakatani Y, Nakamura Y, Namikawa IMicrobiol Immunol10.1111/j.1348-0421.1993.tb03182.x1993*Adhesins, Bacterial, Amino Acid Sequence, Antigens, Bacterial/chemistry/metabolism, Bacterial Adhesion/physiology, Bacterial Outer Membrane Proteins/chemistry/immunology/*metabolism, *Bacterial Proteins, Binding Sites, *Carrier Proteins, Fibronectins/chemistry/metabolism, Humans, Immunoblotting, In Vitro Techniques, Molecular Sequence Data, Molecular Weight, Mouth/microbiology, Oligopeptides/chemistry/metabolism/pharmacology, Treponema/immunology/isolation & purification/*metabolismPathogenicity
Enzymology8502179Antigenic behaviors of two axial flagellar proteins detected in Treponema denticola.Umemoto T, Wadood A, Nakamura Y, Nakatani Y, Namikawa IMicrobiol Immunol10.1111/j.1348-0421.1993.tb03194.x1993Antigens, Bacterial/*immunology, Bacterial Proteins/*immunology, Cross Reactions, Electrophoresis, Polyacrylamide Gel, Flagella/*immunology/ultrastructure, Humans, Immunoblotting, Microscopy, Immunoelectron, Treponema/*immunology/ultrastructurePathogenicity
Phylogeny8602347Identity of 1:2:1 and 2:4:2 subgingival spirochetes by DNA hybridization.Olsen I, Fiehn NE, Johnson JLOral Microbiol Immunol10.1111/j.1399-302x.1995.tb00170.x1995Bacterial Typing Techniques, Base Composition, Cytosine/analysis, DNA Fingerprinting, DNA, Bacterial/genetics, Dental Plaque/microbiology, Guanine/analysis, Nucleic Acid Hybridization, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Treponema/*classificationTranscriptome
Cultivation9467395Environmental effects on the growth and proteolysis of Treponema denticola ATCC 33520.Mikx FHOral Microbiol Immunol10.1111/j.1399-302x.1997.tb00387.x1997Culture Media, Hydrogen, Hydrogen-Ion Concentration, Oxidation-Reduction, Oxygen, Peptide Hydrolases/metabolism, Periodontal Pocket/microbiology, Treponema/*enzymology/growth & developmentMetabolism
Enzymology9492176Adherence of human oral spirochetes by collagen-binding proteins.Umemoto T, Li M, Namikawa IMicrobiol Immunol10.1111/j.1348-0421.1997.tb01950.x1997*Bacterial Adhesion, Bacterial Outer Membrane Proteins/*analysis/immunology/isolation & purification/metabolism, Carrier Proteins/*analysis/metabolism, Collagen/*metabolism, Electrophoresis, Polyacrylamide Gel, Hot Temperature, Humans, Immunoblotting, Microscopy, Electron, Peptides/analysis, Protein Binding, Treponema/*chemistry/immunology/*physiologyMetabolism
Enzymology10567950Multiple forms of the major phenylalanine specific protease in Treponema denticola.Rosen G, Naor R, Sela MNJ Periodontal Res10.1111/j.1600-0765.1999.tb02253.x1999Actins/metabolism, Bacterial Proteins, Blotting, Western/methods/statistics & numerical data, Chymotrypsin/*analysis/isolation & purification/metabolism, Electrophoresis, Polyacrylamide Gel/methods/statistics & numerical data, Humans, Keratins/metabolism, Peptide Hydrolases, Periodontal Pocket/microbiology, Phenylalanine/*metabolism, Treponema/*enzymology/isolation & purificationMetabolism
Metabolism11776931[Collagen-binding proteins of human oral spirochetes].Li M, Liu Z, Umemoto TZhonghua Kou Qiang Yi Xue Za Zhi1999Bacterial Adhesion, Bacterial Proteins/metabolism, Collagen Type I/metabolism, Collagen Type IV/metabolism, Collagen Type V/metabolism, Humans, Integrins/*metabolism, Mouth/microbiology, Protein Binding, Receptors, Collagen, Species Specificity, Spirochaetales/*chemistry/physiology, Treponema/chemistry/physiologyPathogenicity
Pathogenicity11895994Complementation of a Treponema denticola flgE mutant with a novel coumermycin A1-resistant T. denticola shuttle vector system.Chi B, Limberger RJ, Kuramitsu HKInfect Immun10.1128/IAI.70.4.2233-2237.20022002Aminocoumarins, Bacterial Proteins/*genetics, Coumarins/*pharmacology, DNA Gyrase/*genetics, Drug Resistance, Bacterial, Enzyme Inhibitors/*pharmacology, Genetic Complementation Test, *Genetic Vectors, Mutation, Plasmids, *Topoisomerase II Inhibitors, Transformation, Bacterial, Treponema/drug effects/*genetics/pathogenicity, Virulence
14694829Effects of a mixed infection with Porphyromonas gingivalis and Treponema denticola on abscess formation and immune responses in mice.Washizu M, Ishihara K, Honma K, Okuda KBull Tokyo Dent Coll10.2209/tdcpublication.44.1412003Abscess/immunology/*microbiology, Animals, Antigens, Bacterial/immunology, Bacteroidaceae Infections/immunology/*microbiology, Disease Models, Animal, Hypersensitivity, Delayed/immunology, Immunoglobulin G/blood/immunology, Male, Mice, Mice, Inbred BALB C, Porphyromonas gingivalis/immunology/*physiology, Rupture, Spontaneous, Skin Diseases, Infectious/immunology/*microbiology, Time Factors, Treponema/immunology/*physiology, Treponemal Infections/immunology/*microbiology
Metabolism15271922Multiple functions of the leucine-rich repeat protein LrrA of Treponema denticola.Ikegami A, Honma K, Sharma A, Kuramitsu HKInfect Immun10.1128/IAI.72.8.4619-4627.20042004Amino Acid Sequence, Bacterial Adhesion, Bacterial Proteins/chemistry/genetics/metabolism, Base Sequence, Cell Line, Cloning, Molecular, Humans, Leucine-Rich Repeat Proteins, Molecular Sequence Data, Movement, Proteins/chemistry/genetics/*metabolism, Recombinant Proteins/genetics/metabolism, Repetitive Sequences, Amino Acid, Sequence Analysis, DNA, Treponema/genetics/metabolism/pathogenicity/*physiologyEnzymology
Pathogenicity17011804The influence of cholesterol, progesterone, 4-androstenedione and testosterone on the growth of Treponema denticola ATCC 33520 in batch cultures.Clark DT, Soory MAnaerobe10.1016/j.anaerobe.2006.08.0022006Cholesterol/*pharmacology, Colony Count, Microbial, Culture Media/chemistry, Gonadal Steroid Hormones/*pharmacology, Humans, Periodontal Diseases/microbiology, Treponema denticola/*drug effects/growth & developmentCultivation
Metabolism17803630Steroid 5alpha-reductase activity of Treponema denticola.Clark DT, Soory MOral Microbiol Immunol10.1111/j.1399-302X.2007.00364.x20073-Oxo-5-alpha-Steroid 4-Dehydrogenase/*metabolism, Androstenedione/metabolism, Buffers, Carbon Radioisotopes, Cholestanol/metabolism, Cholesterol/metabolism, Chromatography, Thin Layer, Coenzymes, Corticosterone/metabolism, Enzyme Inhibitors/pharmacology, Ethanol/pharmacology, Humans, Hydrogen-Ion Concentration, NADP/metabolism, Progesterone/metabolism, Radiopharmaceuticals, Subcellular Fractions/enzymology, Substrate Specificity, Testosterone/metabolism, Time Factors, Treponema denticola/*enzymologyEnzymology
Enzymology21602384Disruption of a type II endonuclease (TDE0911) enables Treponema denticola ATCC 35405 to accept an unmethylated shuttle vector.Bian J, Li CAppl Environ Microbiol10.1128/AEM.00417-112011DNA Restriction Enzymes/genetics/*metabolism, DNA, Bacterial/genetics/*metabolism, *Gene Knockout Techniques, Genetic Vectors, *Transformation, Bacterial, Treponema denticola/*enzymology/geneticsMetabolism
Metabolism25152229Dentilisin involvement in coaggregation between Treponema denticola and Tannerella forsythia.Sano Y, Okamoto-Shibayama K, Tanaka K, Ito R, Shintani S, Yakushiji M, Ishihara KAnaerobe10.1016/j.anaerobe.2014.08.0082014*Bacterial Adhesion, Bacterial Proteins, Bacteroidetes/metabolism/*physiology, Chymotrypsin/*metabolism, Optical Imaging, Peptide Hydrolases, Protein Binding, Proteolysis, Spectrophotometry, Treponema denticola/metabolism/*physiology

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
114599Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID92963.1
124043Dr. Isabel Schober, Dr. Julia KoblitzData extracted from sequence databases, automatically matched based on designation and taxonomy