Name: Treponema denticola JCM 8226
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 165775

Type strain:

Species: Treponema denticola

Culture col. no.: JCM 8226, ATCC 33521, CIP 103917

Strain history: T. Mitsuoka <-- ATCC 33521 <-- R. K. Nauman 11.

NCBI tax ID(s): 999429 (strain), 158 (species)

SI-ID 92964

ATCC 33521, JCM 8226

Other strains from Treponema denticola

T. denticola DSM 14222, ATCC 35405, JCM 8153, ... (type strain)
T. denticola CIP 64.44
T. denticola JCM 8152, ATCC 35404, CIP 103920
T. denticola JCM 8225, ATCC 33520, CIP 103917

Section

Treponema denticola JCM 8226 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from Human oral cavity.

Gram-negative
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Spirochaetota*
	Class	*Spirochaetia*
	Order	*Spirochaetales*
	Family	*Treponemataceae*
	Genus	*Treponema*
	Species	**Treponema denticola**
	Full Scientific Name (LPSN)	Treponema denticola (ex Flügge 1886) Chan et al. 1993

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.467

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	37 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

anaerobe Confidence in %99.047

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.983
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Human oral cavity
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence LC007112 (>99% sequence identity) for Treponema denticola from Microbeatlas

Aquatic Samples	521
Soil Samples	517
Animal Samples	28134
Plant Samples	223
Total Samples	29395

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Treponema denticola gene for 16S ribosomal RNA, partial sequence, strain: JCM 8226	LC007112	1506	ENA	158 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Treponema denticola ATCC 33521	GCA_000338595	scaffold	GenBank	999429 tax ID
[Ref.: #66792]	Treponema denticola ATCC 33521	999429.3	wgs	PATRIC	999429 tax ID	*
[Ref.: #66792]	Treponema denticola ATCC 33521	2558860187	draft	JGI IMG/M	999429 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Treponema denticola ATCC 33521 ATCC 33521 NCBI: GCA_000338595.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Treponema denticola ATCC 33521 PATRIC: 999429.3
[Ref.: #69480]	motile	yes	84.33	no
[Ref.: #69480]	flagellated	no	88.562	no
[Ref.: #69480]	gram-positive	no	93.479	no
[Ref.: #69480]	anaerobic	yes	99.214	no
[Ref.: #69480]	halophile	no	84.24	no
[Ref.: #69480]	spore-forming	no	85.707	no
[Ref.: #69480]	thermophile	no	97.43	yes
[Ref.: #69480]	glucose-util	yes	82.558	no
[Ref.: #69480]	aerobic	no	98.73	no
[Ref.: #69480]	glucose-ferment	yes	68.402	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 8226, ATCC 33521, CIP 103917

[Ref.: #114600]

SI-ID 92964

Literature:

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Evidence for a new type of outer membrane lipid in oral spirochete Treponema denticola. Functioning permeation barrier without lipopolysaccharides.	Schultz CP, Wolf V, Lange R, Mertens E, Wecke J, Naumann D, Zahringer U	J Biol Chem	10.1074/jbc.273.25.15661	1998	*
Phylogeny	Characterization of monoclonal antibodies to two Treponema denticola serotypes by the indirect fluorescent-antibody assay.	Kearns EA, Simonson LG, Schutt RW, Johnson MJ, Neil LC	Microbios		1991	*
	Characterization of antisera raised against Treponema denticola (ATCC 33521) whole cell, outer sheath, protoplasmic cylinder, and axial flagella.	Wolf V, Lange R	Zentralbl Bakteriol	10.1016/s0934-8840(11)80594-3	1994	*
	Activation of bone marrow-derived dendritic cells and CD4(+) T cell differentiation by outer membrane vesicles of periodontal pathogens.	Lim Y, Kim HY, An SJ, Choi BK	J Oral Microbiol	10.1080/20002297.2022.2123550	2022	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#114600

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID92964.1 )

* These data were automatically processed and therefore are not curated

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Treponema denticola ATCC 33521 ATCC 33521

Treponema denticola ATCC 33521

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