Strain identifier
BacDive ID: 165775
Type strain: 
Species: Treponema denticola
Strain history: T. Mitsuoka <-- ATCC 33521 <-- R. K. Nauman 11.
NCBI tax ID(s): 999429 (strain), 158 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 165775
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-negative
description: Treponema denticola JCM 8226 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from Human oral cavity.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 158 | species |
| 999429 | strain |
strain history
- @ref: 67770
- history: T. Mitsuoka <-- ATCC 33521 <-- R. K. Nauman 11.
doi: 10.13145/bacdive165775.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/spirochaetota
- domain: Bacteria
- phylum: Spirochaetota
- class: Spirochaetia
- order: Spirochaetales
- family: Treponemataceae
- genus: Treponema
- species: Treponema denticola
- full scientific name: Treponema denticola (ex Flügge 1886) Chan et al. 1993
@ref: 67770
domain: Bacteria
phylum: Spirochaetes
class: Spirochaetia
order: Spirochaetales
family: Treponemataceae
genus: Treponema
species: Treponema denticola
full scientific name: Treponema denticola Chan et al. 1993
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.467
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 69480
- oxygen tolerance: anaerobe
- confidence: 99.047
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.983 |
| 69481 | no | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Human oral cavity
taxonmaps
- @ref: 69479
- File name: preview.99_1355.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_67;96_784;97_913;98_1070;99_1355&stattab=map
- Last taxonomy: Treponema denticola
- 16S sequence: LC007112
- Sequence Identity:
- Total samples: 29395
- soil counts: 517
- aquatic counts: 521
- animal counts: 28134
- plant counts: 223
Sequence information
16S sequences
- @ref: 67770
- description: Treponema denticola gene for 16S ribosomal RNA, partial sequence, strain: JCM 8226
- accession: LC007112
- length: 1506
- database: ena
- NCBI tax ID: 158
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Treponema denticola ATCC 33521 | 999429.3 | wgs | patric | 999429 |
| 66792 | Treponema denticola ATCC 33521 | 2558860187 | draft | img | 999429 |
| 67770 | Treponema denticola ATCC 33521 | GCA_000338595 | scaffold | ncbi | 999429 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | yes | 84.33 | no |
| flagellated | no | 88.562 | no |
| gram-positive | no | 93.479 | no |
| anaerobic | yes | 99.214 | no |
| halophile | no | 84.24 | no |
| spore-forming | no | 85.707 | no |
| thermophile | no | 97.43 | yes |
| glucose-util | yes | 82.558 | no |
| aerobic | no | 98.73 | no |
| glucose-ferment | yes | 68.402 | no |
External links
@ref: 67770
culture collection no.: JCM 8226, ATCC 33521, CIP 103917
straininfo link
- @ref: 114600
- straininfo: 92964
literature
| topic | Pubmed-ID | title | authors | journal | year | mesh | topic2 | DOI |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 2030646 | Characterization of monoclonal antibodies to two Treponema denticola serotypes by the indirect fluorescent-antibody assay. | Kearns EA, Simonson LG, Schutt RW, Johnson MJ, Neil LC | Microbios | 1991 | Antibodies, Bacterial/*immunology, Antibodies, Monoclonal/*immunology, Antibody Specificity, Cross Reactions, Enzyme-Linked Immunosorbent Assay, Fluorescent Antibody Technique, Humans, Periodontal Diseases/*microbiology, Serotyping, Species Specificity, Treponema/*immunology/isolation & purification | Pathogenicity | |
| 8167426 | Characterization of antisera raised against Treponema denticola (ATCC 33521) whole cell, outer sheath, protoplasmic cylinder, and axial flagella. | Wolf V, Lange R | Zentralbl Bakteriol | 1994 | Antibodies, Bacterial/*immunology, Antigens, Bacterial/*immunology, Enzyme-Linked Immunosorbent Assay, Flagella/immunology, *Immune Sera, Immunoblotting, Staphylococcal Protein A, Subcellular Fractions/immunology, Treponema/*immunology | 10.1016/s0934-8840(11)80594-3 | ||
| Enzymology | 9624160 | Evidence for a new type of outer membrane lipid in oral spirochete Treponema denticola. Functioning permeation barrier without lipopolysaccharides. | Schultz CP, Wolf V, Lange R, Mertens E, Wecke J, Naumann D, Zahringer U | J Biol Chem | 1998 | *Cell Membrane Permeability, *Conotoxins, Electrophoresis, Polyacrylamide Gel, Fatty Acids/analysis, Lipopolysaccharides/*chemistry, Mass Spectrometry, Membrane Fluidity, Membrane Lipids/*chemistry, Molecular Weight, Neuropeptides/*chemistry/*metabolism, Spectroscopy, Fourier Transform Infrared, Teichoic Acids/chemistry, Treponema/*chemistry/ultrastructure | Pathogenicity | 10.1074/jbc.273.25.15661 |
| 36312320 | Activation of bone marrow-derived dendritic cells and CD4(+) T cell differentiation by outer membrane vesicles of periodontal pathogens. | Lim Y, Kim HY, An SJ, Choi BK | J Oral Microbiol | 2022 | 10.1080/20002297.2022.2123550 |
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |
| 114600 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID92964.1 |