Streptomyces niveus (DSM 40088, AS 4.1370, ATCC 19793)

Name: Streptomyces niveus (DSM 40088, AS 4.1370, ATCC 19793)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 16448

Type strain

Culture col. no. DSM 40088 AS 4.1370 ATCC 19793 CBS 545.68 ETH 28497 19 more

NCBI tax ID(s) 193462

Special Collections DSMZ CCUG JCM

History <- E.B. Shirling, ISP <- NRRL KCC S-0251 <-- NRRL 2466.

Links

Streptomyces niveus DSM 40088 is a bacterium that was isolated from soil.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 13856

LMG 5980,ATCC 19793,DSM 40088,IFO 12804,IMET 43503,JCM 4251,JCM 4599,LMG 19395,NCIB 9219,NRRL 2466,CCRC 11514,CCUG 11108,NCIMB 9219,NRRL B-2466,CBS 545.68,CBS 426.61,NBRC 12804,AS 4.1370,BCRC 11514,NCIM 2502,CGMCC 4.1370

@ref 20215

Last LPSN update 2026-02-09 11:21:58

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptomyces

Species Streptomyces niveus

Full scientific name Streptomyces niveus Smith et al. 1956 (Approved Lists 1980)

Synonyms (2)

Streptomyces laceyi
Streptomyces spheroides

BacDive ID	Other strains from **Streptomyces niveus** (6)	Type strain
16449	S. niveus MA-319, DSM 40292, ATCC 23965, CBS 491.62, ...
16450	S. niveus C7655, DSM 41786
16451	S. niveus C765, DSM 41787
16452	S. niveus C7654, DSM 41788, AS 4.1832, JCM 12606, NBRC ...
127963	S. niveus ST028267(HKI), FSU-4039, Schmiedeknecht 491,
127964	S. niveus SF004039(FSU),

Morphology

Cell morphology

@ref	Gram stain	Confidence	Motility
125439	positive	99.8
125439		91.7

Multimedia

@ref:	9300
multimedia content:	DSM_40088.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_40088.jpg
caption:	Medium 65 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

@ref:	9300
multimedia content:	DSM_40088-1.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_40088-1.jpg
caption:	Medium 65 28°C
intellectual property rights:	Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
9300	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
9300	ISP 5 MEDIUM (DSMZ Medium 993)		Medium recipe at MediaDive	Name: ISP 5 MEDIUM (DSMZ Medium 993) Composition: Agar 20.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l L-Asparagine 1.0 g/l FeSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l ZnSO4 x 7 H2O 0.001 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
9300	positive	growth	28
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	aerobe	91.659
125439	obligate aerobe	98.4

Compound production

@ref	Compound
9300	novobiocin
20216	Novobiocin (Albamycin, Biotexin, Cathocin, Cathomycin, Crystallinic acid, Griseoflavin)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
67770	28368 ChEBI	novobiocin

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
9300	soil	USA	USA	North America

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
9300	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	Streptomyces niveus NCIMB 9219	complete			2563366693	193462	91.72
67770	ASM172305v1 assembly for Streptomyces niveus NRRL 2466	scaffold	GCA_001723055	193462.3	2811995186	193462

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Actinoalloteichus caeruleus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4599	D44256	120	65497
20218	Actinoalloteichus caeruleus gene for 16S rRNA, partial sequence, strain: NBRC 12804	AB184160	1475	65497
20218	Streptomyces caeruleus strain NRRL 2466T 16S ribosomal RNA gene, partial sequence	DQ442532	1468	193462

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Streptomyces niveus NRRL 2466
NCBI: GCA_001723055

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	87.90	no
125439	motility	BacteriaNetⓘ	no	91.70	no
125439	gram_stain	BacteriaNetⓘ	positive	99.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptomyces niveus strain NRRL 2466
PATRIC: 193462.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	88.42	no
125438	anaerobic	anaerobicⓘ	no	96.39	no
125438	spore-forming	spore-formingⓘ	yes	86.99	no
125438	aerobic	aerobicⓘ	yes	91.66	no
125438	thermophilic	thermophileⓘ	no	95.50	yes
125438	flagellated	motile2+ⓘ	no	88.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Draft Genome Sequence of Streptomyces niveus NCIMB 11891, Producer of the Aminocoumarin Antibiotic Novobiocin.	Flinspach K, Ruckert C, Kalinowski J, Heide L, Apel AK.	Genome Announc	10.1128/genomea.01146-13	2014
Enzymology	Actinobacteria associated with the marine sponges Cinachyra sp., Petrosia sp., and Ulosa sp. and their culturability.	Khan ST, Takagi M, Shin-ya K.	Microbes Environ	10.1264/jsme2.me11270	2012
Biotechnology	Novel endophytic actinomycetes species Streptomyces panacea of Panax sokpayensis produce antimicrobial compounds against multidrug resistant Staphylococcus aureus	Rai S, Singh L, Liriina K, Jeyaram K, Parija T, Sahoo D.	Sci Rep		2025
Phylogeny	Phylogenetic and Functional Characterization of Culturable Endophytic Actinobacteria Associated With Camellia spp. for Growth Promotion in Commercial Tea Cultivars.	Borah A, Thakur D.	Front Microbiol	10.3389/fmicb.2020.00318	2020
	Invisible Inhabitants of Plants and a Sustainable Planet: Diversity of Bacterial Endophytes and their Potential in Sustainable Agriculture.	Alam M, Pandit B, Moin A, Iqbal UN.	Indian J Microbiol	10.1007/s12088-024-01225-6	2024
Phylogeny	Diversity of Culturable Bacteria Isolated from Highland Barley Cultivation Soil in Qamdo, Tibet Autonomous Region.	Pan HU, Zhou J, Dawa Z, Dai Y, Zhang Y, Yang H, Wang C, Liu H, Zhou H, Lu X, Tian Y.	Pol J Microbiol	10.33073/pjm-2021-008	2021
	Harnessing Bacterial Endophytes for Promotion of Plant Growth and Biotechnological Applications: An Overview.	Eid AM, Fouda A, Abdel-Rahman MA, Salem SS, Elsaied A, Oelmuller R, Hijri M, Bhowmik A, Elkelish A, Hassan SE.	Plants (Basel)	10.3390/plants10050935	2021
Metabolism	Antimicrobial potentiality of actinobacteria isolated from two microbiologically unexplored forest ecosystems of Northeast India.	Das R, Romi W, Das R, Sharma HK, Thakur D.	BMC Microbiol	10.1186/s12866-018-1215-7	2018
Metabolism	The pcd gene encoding piperideine-6-carboxylate dehydrogenase involved in biosynthesis of alpha-aminoadipic acid is located in the cephamycin cluster of Streptomyces clavuligerus.	Perez-Llarena FJ, Rodriguez-Garcia A, Enguita FJ, Martin JF, Liras P.	J Bacteriol	10.1128/jb.180.17.4753-4756.1998	1998
Phylogeny	The search for synonyms among streptomycetes by using SDS-PAGE of whole-cell proteins. Emendation of the species Streptomyces aurantiacus, Streptomyces cacaoi subsp. cacaoi, Streptomyces caeruleus and Streptomyces violaceus.	Lanoot B, Vancanneyt M, Cleenwerck I, Wang L, Li W, Liu Z, Swings J	Int J Syst Evol Microbiol	10.1099/00207713-52-3-823	2002
Metabolism	High frequency transformation of Streptomyces niveus protoplasts by plasmid DNA.	Hussain HA, Ritchie DA	J Appl Bacteriol	10.1111/j.1365-2672.1991.tb03811.x	1991
Enzymology	Genetic instability in Streptomyces niveus plasmid pSN2: in vivo formation of deletion derivatives.	Hussain HA, Mitchell JI, Ritchie DA	Arch Microbiol	10.1007/BF00245235	1990
Phylogeny	Streptomyces corynorhini sp. nov., isolated from Townsend's big-eared bats (Corynorhinus townsendii).	Hamm PS, Caimi NA, Northup DE, Valdez EW, Buecher DC, Dunlap CA, Labeda DP, Porras-Alfaro A	Antonie Van Leeuwenhoek	10.1007/s10482-019-01261-z	2019
Phylogeny	Streptomyces camponoticapitis sp. nov., an actinomycete isolated from the head of an ant (Camponotus japonicus Mayr).	Li Y, Ye L, Wang X, Zhao J, Ma Z, Yan K, Xiang W, Liu C	Int J Syst Evol Microbiol	10.1099/ijsem.0.001276	2016

References

#9300	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40088
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20216	Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) . Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI):
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Streptomyces niveus (DSM 40088, AS 4.1370, ATCC 19793)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Compound production

Metabolite production

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001723055

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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