Name: Streptomyces niveus DSM 40088
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 16448

Type strain:

Species: Streptomyces niveus

Culture col. no.: DSM 40088, AS 4.1370, ATCC 19793, CBS 545.68, ETH 28497, IFO 12804, ISP 5088, JCM 4251, JCM 4599, KCC S-0251, KCC S-0599, NBRC 12804, NCIB 9219, NRRL 2466, RIA 1072, BCRC 11514, CCUG 11108, CGMCC 4.1370, IFM 1181, IMET 43503, LMG 19395, LMG 5980, MTCC 2525, NCIMB 9219

Strain history: KCC S-0251 <-- NRRL 2466.

NCBI tax ID(s): 193462 (species)

SI-ID 13856

LMG 5980, ATCC 19793, DSM 40088, IFO 12804, IMET 43503, JCM 4251, JCM 4599, LMG 19395, NCIB 9219, NRRL 2466, CCRC 11514, CCUG 11108, NCIMB 9219, NRRL B-2466, CBS 545.68, CBS 426.61, NBRC 12804, AS 4.1370, BCRC 11514, NCIM 2502, CGMCC 4.1370

Special Collections

Other strains from Streptomyces niveus

Section

Streptomyces niveus DSM 40088 is a spore-forming bacterium that was isolated from soil.

spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces niveus**
	Full Scientific Name (LPSN)	Streptomyces niveus Smith et al. 1956 (Approved Lists 1980)

	Synonym	Streptomyces spheroides
	Synonym	Streptomyces laceyi

Information on morphological and physiological properties Morphology

Multimedia content

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Caption:

Medium 65 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

ISP 5 MEDIUM (DSMZ Medium 993)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #9300]			growth	28 °C
[Ref.: #67770]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

aerobe Confidence in %91.659

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Ability of spore formation

yes Confidence in %100

[Ref.: #9300]	Name of produced compound	novobiocin
[Ref.: #20216]	Name of produced compound	Novobiocin (Albamycin, Biotexin, Cathocin, Cathomycin, Crystallinic acid, Griseoflavin)

	Metabolite production	Metabolite	Production
[Ref.: #67770]		novobiocin ChEBI	yes

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9300]	Sample type/isolated from	soil
[Ref.: #9300]	Country	USA
[Ref.: #9300]	Country ISO 3 Code	USA
[Ref.: #9300]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Actinoalloteichus caeruleus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4599	D44256	120	GenBank ENA	65497 tax ID	*
[Ref.: #20218]	Actinoalloteichus caeruleus gene for 16S rRNA, partial sequence, strain: NBRC 12804	AB184160	1475	GenBank ENA	65497 tax ID	*
[Ref.: #20218]	Streptomyces caeruleus strain NRRL 2466T 16S ribosomal RNA gene, partial sequence	DQ442532	1468	GenBank ENA	193462 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces niveus NRRL 2466	GCA_001723055	scaffold	GenBank ENA	193462 tax ID
[Ref.: #66792]	Streptomyces niveus strain NRRL 2466	193462.3	wgs	PATRIC	193462 tax ID	*
[Ref.: #66792]	Streptomyces niveus NCIMB 9219	2563366693	draft	JGI IMG/M	193462 tax ID	*
[Ref.: #66792]	Streptomyces niveus NRRL 2466	2811995186	draft	JGI IMG/M	193462 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces niveus strain NRRL 2466 PATRIC: 193462.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces niveus strain NRRL 2466 PATRIC: 193462.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	88.422	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.393	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	86.994	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	91.659	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95.5	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	88.5	no

Availability in culture collections External links

[Ref.: #9300]

Culture collection no.

DSM 40088, AS 4.1370, ATCC 19793, CBS 545.68, ETH 28497, IFO 12804, ISP 5088, JCM 4251, JCM 4599, KCC S-0251, KCC S-0599, NBRC 12804, NCIB 9219, NRRL 2466, RIA 1072, BCRC 11514, CCUG 11108, CGMCC 4.1370, IFM 1181, IMET 43503, LMG 19395, LMG 5980, MTCC 2525, NCIMB 9219

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SI-ID 13856

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	The search for synonyms among streptomycetes by using SDS-PAGE of whole-cell proteins. Emendation of the species Streptomyces aurantiacus, Streptomyces cacaoi subsp. cacaoi, Streptomyces caeruleus and Streptomyces violaceus.	Lanoot B, Vancanneyt M, Cleenwerck I, Wang L, Li W, Liu Z, Swings J	Int J Syst Evol Microbiol	10.1099/00207713-52-3-823	2002	*
Phylogeny	Streptomyces corynorhini sp. nov., isolated from Townsend's big-eared bats (Corynorhinus townsendii).	Hamm PS, Caimi NA, Northup DE, Valdez EW, Buecher DC, Dunlap CA, Labeda DP, Porras-Alfaro A	Antonie Van Leeuwenhoek	10.1007/s10482-019-01261-z	2019	*
Phylogeny	Streptomyces camponoticapitis sp. nov., an actinomycete isolated from the head of an ant (Camponotus japonicus Mayr).	Li Y, Ye L, Wang X, Zhao J, Ma Z, Yan K, Xiang W, Liu C	Int J Syst Evol Microbiol	10.1099/ijsem.0.001276	2016	*
Metabolism	High frequency transformation of Streptomyces niveus protoplasts by plasmid DNA.	Hussain HA, Ritchie DA	J Appl Bacteriol	10.1111/j.1365-2672.1991.tb03811.x	1991	*
Enzymology	Genetic instability in Streptomyces niveus plasmid pSN2: in vivo formation of deletion derivatives.	Hussain HA, Mitchell JI, Ritchie DA	Arch Microbiol	10.1007/BF00245235	1990	*

References

#9300

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40088

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20216

Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85485

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID13856.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces niveus strain NRRL 2466

Streptomyces niveus strain NRRL 2466

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