Strain identifier

BacDive ID: 16448

Type strain: Yes

Species: Streptomyces niveus

Strain history: KCC S-0251 <-- NRRL 2466.

NCBI tax ID(s): 193462 (species)

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General

@ref: 9300

BacDive-ID: 16448

DSM-Number: 40088

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic

description: Streptomyces niveus DSM 40088 is a spore-forming, mesophilic bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 193462
  • Matching level: species

strain history

@refhistory
9300<- E.B. Shirling, ISP <- NRRL
67770KCC S-0251 <-- NRRL 2466.

doi: 10.13145/bacdive16448.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces niveus
  • full scientific name: Streptomyces niveus Smith et al. 1956 (Approved Lists 1980)
  • synonyms

    @refsynonym
    20215Streptomyces spheroides
    20215Streptomyces laceyi

@ref: 9300

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces niveus

full scientific name: Streptomyces niveus Smith et al. 1956

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no93.882
69480100positive

multimedia

  • @ref: 9300
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_40088.jpg
  • caption: Medium 65 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9300GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
9300ISP 5 MEDIUM (DSMZ Medium 993)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium993.pdf

culture temp

@refgrowthtypetemperaturerange
9300positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481yes100
69480yes100

compound production

@refcompound
9300novobiocin
20216Novobiocin (Albamycin, Biotexin, Cathocin, Cathomycin, Crystallinic acid, Griseoflavin)

metabolite production

  • @ref: 67770
  • Chebi-ID: 28368
  • metabolite: novobiocin
  • production: yes

Isolation, sampling and environmental information

isolation

  • @ref: 9300
  • sample type: soil
  • country: USA
  • origin.country: USA
  • continent: North America

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

  • @ref: 9300
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Actinoalloteichus cyanogriseus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4599D44256120ena65497
20218Actinoalloteichus cyanogriseus gene for 16S rRNA, partial sequence, strain: NBRC 12804AB1841601475ena65497
20218Streptomyces caeruleus strain NRRL 2466T 16S ribosomal RNA gene, partial sequenceDQ4425321468ena193462

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces niveus strain NRRL 2466193462.3wgspatric193462
66792Streptomyces niveus NCIMB 92192563366693draftimg193462
66792Streptomyces niveus NRRL 24662811995186draftimg193462
67770Streptomyces niveus NRRL 2466GCA_001723055scaffoldncbi193462

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
motileno94.059no
gram-positiveyes86.184no
anaerobicno99.032no
aerobicyes92.917no
halophileno92.96no
spore-formingyes93.516no
glucose-utilyes89.485no
flagellatedno97.3no
thermophileno98.595yes
glucose-fermentno88.281no

External links

@ref: 9300

culture collection no.: DSM 40088, AS 4.1370, ATCC 19793, CBS 545.68, ETH 28497, IFO 12804, ISP 5088, JCM 4251, JCM 4599, KCC S-0251, KCC S-0599, NBRC 12804, NCIB 9219, NRRL 2466, RIA 1072, BCRC 11514, CCUG 11108, CGMCC 4.1370, IFM 1181, IMET 43503, LMG 19395, LMG 5980, MTCC 2525, NCIMB 9219

straininfo link

  • @ref: 85485
  • straininfo: 13856

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Metabolism1761435High frequency transformation of Streptomyces niveus protoplasts by plasmid DNA.Hussain HA, Ritchie DAJ Appl Bacteriol10.1111/j.1365-2672.1991.tb03811.x1991DNA, Bacterial/*genetics, Novobiocin/biosynthesis, *Plasmids, Protoplasts/*physiology, Streptomyces/*genetics/metabolism, *Transformation, Bacterial
Enzymology2256784Genetic instability in Streptomyces niveus plasmid pSN2: in vivo formation of deletion derivatives.Hussain HA, Mitchell JI, Ritchie DAArch Microbiol10.1007/BF002452351990Chromosome Deletion, Cloning, Molecular, DNA, Bacterial/*analysis, Drug Resistance, Microbial, Electrophoresis, Agar Gel, Nucleic Acid Hybridization, Phenotype, *Plasmids, Protoplasts, Restriction Mapping, Streptomyces/drug effects/*genetics, Thiostrepton/pharmacology, Transformation, BacterialPhylogeny
Phylogeny12054245The search for synonyms among streptomycetes by using SDS-PAGE of whole-cell proteins. Emendation of the species Streptomyces aurantiacus, Streptomyces cacaoi subsp. cacaoi, Streptomyces caeruleus and Streptomyces violaceus.Lanoot B, Vancanneyt M, Cleenwerck I, Wang L, Li W, Liu Z, Swings JInt J Syst Evol Microbiol10.1099/00207713-52-3-8232002Bacterial Proteins/*analysis, Bacterial Typing Techniques, Electrophoresis, Polyacrylamide Gel, Nucleic Acid Hybridization, Phenotype, Species Specificity, Streptomyces/*chemistry/*classification/geneticsEnzymology
Phylogeny27381566Streptomyces camponoticapitis sp. nov., an actinomycete isolated from the head of an ant (Camponotus japonicus Mayr).Li Y, Ye L, Wang X, Zhao J, Ma Z, Yan K, Xiang W, Liu CInt J Syst Evol Microbiol10.1099/ijsem.0.0012762016Animals, Ants/*microbiology, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny30993571Streptomyces corynorhini sp. nov., isolated from Townsend's big-eared bats (Corynorhinus townsendii).Hamm PS, Caimi NA, Northup DE, Valdez EW, Buecher DC, Dunlap CA, Labeda DP, Porras-Alfaro AAntonie Van Leeuwenhoek10.1007/s10482-019-01261-z2019Animals, Bacterial Typing Techniques, Base Composition, Chiroptera/*microbiology, Metabolic Networks and Pathways/genetics, Microscopy, Electron, Scanning, Multilocus Sequence Typing, New Mexico, Nucleic Acid Hybridization, Phylogeny, Spores, Bacterial/ultrastructure, Streptomyces/*classification/genetics/*isolation & purification/physiology, Whole Genome SequencingEnzymology

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9300Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40088)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40088
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20216Curators of the HKIhttp://www.leibniz-hki.de/de/Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI)
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
85485Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID13856.1StrainInfo: A central database for resolving microbial strain identifiers