Strain identifier
BacDive ID: 16448
Type strain:
Species: Streptomyces niveus
Strain history: KCC S-0251 <-- NRRL 2466.
NCBI tax ID(s): 193462 (species)
General
@ref: 9300
BacDive-ID: 16448
DSM-Number: 40088
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic
description: Streptomyces niveus DSM 40088 is a spore-forming, mesophilic bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 193462
- Matching level: species
strain history
@ref | history |
---|---|
9300 | <- E.B. Shirling, ISP <- NRRL |
67770 | KCC S-0251 <-- NRRL 2466. |
doi: 10.13145/bacdive16448.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces niveus
- full scientific name: Streptomyces niveus Smith et al. 1956 (Approved Lists 1980)
synonyms
@ref synonym 20215 Streptomyces spheroides 20215 Streptomyces laceyi
@ref: 9300
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces niveus
full scientific name: Streptomyces niveus Smith et al. 1956
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain |
---|---|---|---|
69480 | no | 93.882 | |
69480 | 100 | positive |
multimedia
- @ref: 9300
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_40088.jpg
- caption: Medium 65 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
9300 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
9300 | ISP 5 MEDIUM (DSMZ Medium 993) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium993.pdf |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
9300 | positive | growth | 28 | mesophilic |
67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | yes | 100 |
69480 | yes | 100 |
compound production
@ref | compound |
---|---|
9300 | novobiocin |
20216 | Novobiocin (Albamycin, Biotexin, Cathocin, Cathomycin, Crystallinic acid, Griseoflavin) |
metabolite production
- @ref: 67770
- Chebi-ID: 28368
- metabolite: novobiocin
- production: yes
Isolation, sampling and environmental information
isolation
- @ref: 9300
- sample type: soil
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Safety information
risk assessment
- @ref: 9300
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Actinoalloteichus cyanogriseus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4599 | D44256 | 120 | ena | 65497 |
20218 | Actinoalloteichus cyanogriseus gene for 16S rRNA, partial sequence, strain: NBRC 12804 | AB184160 | 1475 | ena | 65497 |
20218 | Streptomyces caeruleus strain NRRL 2466T 16S ribosomal RNA gene, partial sequence | DQ442532 | 1468 | ena | 193462 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Streptomyces niveus strain NRRL 2466 | 193462.3 | wgs | patric | 193462 |
66792 | Streptomyces niveus NCIMB 9219 | 2563366693 | draft | img | 193462 |
66792 | Streptomyces niveus NRRL 2466 | 2811995186 | draft | img | 193462 |
67770 | Streptomyces niveus NRRL 2466 | GCA_001723055 | scaffold | ncbi | 193462 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | yes | 100 | no |
motile | no | 94.059 | no |
gram-positive | yes | 86.184 | no |
anaerobic | no | 99.032 | no |
aerobic | yes | 92.917 | no |
halophile | no | 92.96 | no |
spore-forming | yes | 93.516 | no |
glucose-util | yes | 89.485 | no |
flagellated | no | 97.3 | no |
thermophile | no | 98.595 | yes |
glucose-ferment | no | 88.281 | no |
External links
@ref: 9300
culture collection no.: DSM 40088, AS 4.1370, ATCC 19793, CBS 545.68, ETH 28497, IFO 12804, ISP 5088, JCM 4251, JCM 4599, KCC S-0251, KCC S-0599, NBRC 12804, NCIB 9219, NRRL 2466, RIA 1072, BCRC 11514, CCUG 11108, CGMCC 4.1370, IFM 1181, IMET 43503, LMG 19395, LMG 5980, MTCC 2525, NCIMB 9219
straininfo link
- @ref: 85485
- straininfo: 13856
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Metabolism | 1761435 | High frequency transformation of Streptomyces niveus protoplasts by plasmid DNA. | Hussain HA, Ritchie DA | J Appl Bacteriol | 10.1111/j.1365-2672.1991.tb03811.x | 1991 | DNA, Bacterial/*genetics, Novobiocin/biosynthesis, *Plasmids, Protoplasts/*physiology, Streptomyces/*genetics/metabolism, *Transformation, Bacterial | |
Enzymology | 2256784 | Genetic instability in Streptomyces niveus plasmid pSN2: in vivo formation of deletion derivatives. | Hussain HA, Mitchell JI, Ritchie DA | Arch Microbiol | 10.1007/BF00245235 | 1990 | Chromosome Deletion, Cloning, Molecular, DNA, Bacterial/*analysis, Drug Resistance, Microbial, Electrophoresis, Agar Gel, Nucleic Acid Hybridization, Phenotype, *Plasmids, Protoplasts, Restriction Mapping, Streptomyces/drug effects/*genetics, Thiostrepton/pharmacology, Transformation, Bacterial | Phylogeny |
Phylogeny | 12054245 | The search for synonyms among streptomycetes by using SDS-PAGE of whole-cell proteins. Emendation of the species Streptomyces aurantiacus, Streptomyces cacaoi subsp. cacaoi, Streptomyces caeruleus and Streptomyces violaceus. | Lanoot B, Vancanneyt M, Cleenwerck I, Wang L, Li W, Liu Z, Swings J | Int J Syst Evol Microbiol | 10.1099/00207713-52-3-823 | 2002 | Bacterial Proteins/*analysis, Bacterial Typing Techniques, Electrophoresis, Polyacrylamide Gel, Nucleic Acid Hybridization, Phenotype, Species Specificity, Streptomyces/*chemistry/*classification/genetics | Enzymology |
Phylogeny | 27381566 | Streptomyces camponoticapitis sp. nov., an actinomycete isolated from the head of an ant (Camponotus japonicus Mayr). | Li Y, Ye L, Wang X, Zhao J, Ma Z, Yan K, Xiang W, Liu C | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001276 | 2016 | Animals, Ants/*microbiology, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Phylogeny | 30993571 | Streptomyces corynorhini sp. nov., isolated from Townsend's big-eared bats (Corynorhinus townsendii). | Hamm PS, Caimi NA, Northup DE, Valdez EW, Buecher DC, Dunlap CA, Labeda DP, Porras-Alfaro A | Antonie Van Leeuwenhoek | 10.1007/s10482-019-01261-z | 2019 | Animals, Bacterial Typing Techniques, Base Composition, Chiroptera/*microbiology, Metabolic Networks and Pathways/genetics, Microscopy, Electron, Scanning, Multilocus Sequence Typing, New Mexico, Nucleic Acid Hybridization, Phylogeny, Spores, Bacterial/ultrastructure, Streptomyces/*classification/genetics/*isolation & purification/physiology, Whole Genome Sequencing | Enzymology |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
9300 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40088) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-40088 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20216 | Curators of the HKI | http://www.leibniz-hki.de/de/ | Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
85485 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID13856.1 | StrainInfo: A central database for resolving microbial strain identifiers |