Streptomyces glauciniger (DSM 41867, AS 4.1858, JCM 12278)

Name: Streptomyces glauciniger (DSM 41867, AS 4.1858, JCM 12278)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 16410

Type strain

Strain Designation FXJ 14

Culture col. no. DSM 41867 AS 4.1858 JCM 12278 LMG 22082 NBRC 100913 3 more

NCBI tax ID(s) 235986

Special Collections DSMZ JCM Literature strains

History DSMZ <- Z. Liu; AS 4.1858 <- Y. Huang; FXJ 14 JCM <-- Y. Huang FXJ14.

Links

Streptomyces glauciniger FXJ 14 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from soil in a willow wood.

spore-forming Gram-positive aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 134446

AS 4.1858,JCM 12278,LMG 22082,NBRC 100913,DSM 41867,NRRL B-24320,CGMCC 4.1858

@ref 20215

Last LPSN update 2026-05-29 08:28:46

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptomyces

Species Streptomyces glauciniger

Full scientific name Streptomyces glauciniger Huang et al. 2004

Synonyms (1)

Actinacidiphila glaucinigra

Morphology

Cell morphology

@ref	Gram stain	Confidence
31264	positive
125439	positive	99.293
125439		92.561
125438	positive	90.09

Pigmentation

31264

Productionno

Multimedia

@ref:	10530
multimedia content:	DSM_41867.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_41867.jpg
caption:	Medium 65 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
10530	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
10530	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)	Medium recipe at MediaDive	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
10530	STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)	Medium recipe at MediaDive	Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
10530	positive	growth	28
31264	positive	growth	10-35
31264	positive	optimum	22.5
67770	positive	growth	28

Culture pH

@ref	Ability	Type	PH	PH range
31264	positive	optimum	7.5
31264	positive	growth	05-10	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
31264	aerobe
125438	aerobe	90.642
125439	obligate aerobe	97.826

Spore formation

@ref	Spore formation	Confidence
31264
125438		90.522

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31264	NaCl	positive	growth	0-5 %
31264	NaCl	positive	optimum	2.5 %

Observation

67770

Observationquinones: MK-9(H₆), MK-9(H₈)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31264	30089 ChEBI	acetate	+	carbon source
31264	22599 ChEBI	arabinose	+	carbon source
31264	16947 ChEBI	citrate	+	carbon source
31264	23652 ChEBI	dextrin	+	carbon source
31264	28757 ChEBI	fructose	+	carbon source
31264	28260 ChEBI	galactose	+	carbon source
31264	17234 ChEBI	glucose	+	carbon source
31264	29864 ChEBI	mannitol	+	carbon source
31264	17632 ChEBI	nitrate	+	reduction
31264	16634 ChEBI	raffinose	+	carbon source
31264	26546 ChEBI	rhamnose	+	carbon source
31264	17992 ChEBI	sucrose	+	carbon source
31264	18222 ChEBI	xylose	+	carbon source

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	cellulose degradation	100	5 of 5
66794	phenylmercury acetate degradation	100	2 of 2
66794	acetate fermentation	100	4 of 4
66794	glycolate and glyoxylate degradation	100	6 of 6
66794	phenylacetate degradation (aerobic)	100	5 of 5
66794	ppGpp biosynthesis	100	4 of 4
66794	starch degradation	100	10 of 10
66794	ethanol fermentation	100	2 of 2
66794	1,4-dihydroxy-6-naphthoate biosynthesis	100	6 of 6
66794	valine metabolism	100	9 of 9
66794	biotin biosynthesis	100	4 of 4
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	glycogen biosynthesis	100	4 of 4
66794	palmitate biosynthesis	100	22 of 22
66794	cardiolipin biosynthesis	100	7 of 7
66794	adipate degradation	100	2 of 2
66794	4-hydroxymandelate degradation	100	9 of 9
66794	methylglyoxal degradation	100	5 of 5
66794	IAA biosynthesis	100	3 of 3
66794	glycine betaine biosynthesis	100	5 of 5
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	aerobactin biosynthesis	100	1 of 1
66794	folate polyglutamylation	100	1 of 1
66794	ceramide biosynthesis	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	resorcinol degradation	100	2 of 2
66794	mannosylglycerate biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	acetoin degradation	100	3 of 3
66794	threonine metabolism	100	10 of 10
66794	formaldehyde oxidation	100	3 of 3
66794	coenzyme A metabolism	100	4 of 4
66794	teichoic acid biosynthesis	100	1 of 1
66794	butanoate fermentation	100	4 of 4
66794	NAD metabolism	94.44	17 of 18
66794	photosynthesis	92.86	13 of 14
66794	glutathione metabolism	92.86	13 of 14
66794	leucine metabolism	92.31	12 of 13
66794	phenylalanine metabolism	92.31	12 of 13
66794	degradation of aromatic, nitrogen containing compounds	91.67	11 of 12
66794	pentose phosphate pathway	90.91	10 of 11
66794	proline metabolism	90.91	10 of 11
66794	myo-inositol biosynthesis	90	9 of 10
66794	Entner Doudoroff pathway	90	9 of 10
66794	d-mannose degradation	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	molybdenum cofactor biosynthesis	88.89	8 of 9
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	gluconeogenesis	87.5	7 of 8
66794	flavin biosynthesis	86.67	13 of 15
66794	citric acid cycle	85.71	12 of 14
66794	ubiquinone biosynthesis	85.71	6 of 7
66794	heme metabolism	85.71	12 of 14
66794	aclacinomycin biosynthesis	85.71	6 of 7
66794	propanol degradation	85.71	6 of 7
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	vitamin B12 metabolism	85.29	29 of 34
66794	vitamin B1 metabolism	84.62	11 of 13
66794	purine metabolism	82.98	78 of 94
66794	alanine metabolism	82.76	24 of 29
66794	glycolysis	82.35	14 of 17
66794	glutamate and glutamine metabolism	82.14	23 of 28
66794	metabolism of disaccharids	81.82	9 of 11
66794	factor 420 biosynthesis	80	4 of 5
66794	ethylmalonyl-CoA pathway	80	4 of 5
66794	propionate fermentation	80	8 of 10
66794	hydrogen production	80	4 of 5
66794	metabolism of amino sugars and derivatives	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	glycogen metabolism	80	4 of 5
66794	tetrahydrofolate metabolism	78.57	11 of 14
66794	allantoin degradation	77.78	7 of 9
66794	degradation of hexoses	77.78	14 of 18
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	lipid metabolism	77.42	24 of 31
66794	urea cycle	76.92	10 of 13
66794	methionine metabolism	76.92	20 of 26
66794	tryptophan metabolism	76.32	29 of 38
66794	pyrimidine metabolism	75.56	34 of 45
66794	sulfopterin metabolism	75	3 of 4
66794	isoleucine metabolism	75	6 of 8
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	non-pathway related	73.68	28 of 38
66794	cysteine metabolism	72.22	13 of 18
66794	degradation of sugar acids	72	18 of 25
66794	arginine metabolism	70.83	17 of 24
66794	oxidative phosphorylation	70.33	64 of 91
66794	coenzyme M biosynthesis	70	7 of 10
66794	histidine metabolism	68.97	20 of 29
66794	degradation of sugar alcohols	68.75	11 of 16
66794	cyanate degradation	66.67	2 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	66.67	2 of 3
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	methane metabolism	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	enterobactin biosynthesis	66.67	2 of 3
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	isoprenoid biosynthesis	65.38	17 of 26
66794	tyrosine metabolism	64.29	9 of 14
66794	degradation of pentoses	64.29	18 of 28
66794	d-xylose degradation	63.64	7 of 11
66794	carnitine metabolism	62.5	5 of 8
66794	ketogluconate metabolism	62.5	5 of 8
66794	sulfate reduction	61.54	8 of 13
66794	gallate degradation	60	3 of 5
66794	phenol degradation	60	12 of 20
66794	lipoate biosynthesis	60	3 of 5
66794	arachidonate biosynthesis	60	3 of 5
66794	4-hydroxyphenylacetate degradation	60	6 of 10
66794	lysine metabolism	59.52	25 of 42
66794	polyamine pathway	56.52	13 of 23
66794	nitrate assimilation	55.56	5 of 9
66794	ribulose monophosphate pathway	50	1 of 2
66794	quinate degradation	50	1 of 2
66794	androgen and estrogen metabolism	50	8 of 16
66794	pantothenate biosynthesis	50	3 of 6
66794	vitamin E metabolism	50	2 of 4
66794	glycine metabolism	50	5 of 10
66794	toluene degradation	50	2 of 4
66794	cyclohexanol degradation	50	2 of 4
66794	lactate fermentation	50	2 of 4
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	CMP-KDO biosynthesis	50	2 of 4
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	kanosamine biosynthesis II	50	1 of 2
66794	bile acid biosynthesis, neutral pathway	47.06	8 of 17
66794	3-phenylpropionate degradation	46.67	7 of 15
66794	phenylpropanoid biosynthesis	46.15	6 of 13
66794	phosphatidylethanolamine bioynthesis	46.15	6 of 13
66794	cholesterol biosynthesis	45.45	5 of 11
66794	carotenoid biosynthesis	45.45	10 of 22
66794	lipid A biosynthesis	44.44	4 of 9
66794	benzoyl-CoA degradation	42.86	3 of 7
66794	ascorbate metabolism	40.91	9 of 22
66794	3-chlorocatechol degradation	40	2 of 5
66794	D-cycloserine biosynthesis	40	2 of 5
66794	arachidonic acid metabolism	38.89	7 of 18
66794	vitamin B6 metabolism	36.36	4 of 11
66794	chlorophyll metabolism	33.33	6 of 18
66794	sphingosine metabolism	33.33	2 of 6
66794	mevalonate metabolism	28.57	2 of 7
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	catecholamine biosynthesis	25	1 of 4
66794	methanogenesis from CO2	25	3 of 12
66794	alginate biosynthesis	25	1 of 4
66794	daunorubicin biosynthesis	22.22	2 of 9

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Tree

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
10530	soil in a willow wood	Guangxi Province, Nanning City	China	CHN	Asia
67770	Soil from willow woods	Nanning, Guangxi Province	China	CHN	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
10530	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	IMG-taxon 2671180020 annotated assembly for Actinacidiphila glaucinigra CGMCC 4.1858	scaffold	GCA_900188405	235986.3	2671180020	235986	60.95

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Streptomyces glauciniger gene for 16S rRNA, partial sequence, strain: NBRC 100913	AB249964	1472		235986
10530	Streptomyces glauciniger strain FXJ14 16S ribosomal RNA gene, partial sequence	AY314782	1428		235986

GC content

@ref	GC-content (mol%)	Method
10530	67.0
31264	67
67770	67	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: IMG-taxon 2671180020 annotated assembly for Actinacidiphila glaucinigra CGMCC 4.1858
NCBI: GCA_900188405

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.83	no
125439	gram_stain	BacteriaNetⓘ	positive	99.29	no
125439	spore_formation	BacteriaNetⓘ	yes	89.69	no
125439	motility	BacteriaNetⓘ	no	92.56	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptomyces glauciniger strain CGMCC 4.1858
PATRIC: 235986.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	90.09	yes
125438	anaerobic	anaerobicⓘ	no	97.36	yes
125438	spore-forming	spore-formingⓘ	yes	90.52	no
125438	aerobic	aerobicⓘ	yes	90.64	no
125438	thermophilic	thermophileⓘ	no	93.50	yes
125438	flagellated	motile2+ⓘ	no	88.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Intimate relationships among actinomycetes and mycolic acid-containing bacteria.	Kato M, Asamizu S, Onaka H.	Sci Rep	10.1038/s41598-022-11406-2	2022
Enzymology	Actinobacteria associated with the marine sponges Cinachyra sp., Petrosia sp., and Ulosa sp. and their culturability.	Khan ST, Takagi M, Shin-ya K.	Microbes Environ	10.1264/jsme2.me11270	2012
Pathogenicity	Potentials of Actinomycetes from Reserved Environments as Antibacterial Agents Against Drug-Resistant Clinical Bacterial Strains.	Ahmed RN, Daniel F, Gbala ID, Sanni A	Ethiop J Health Sci	10.4314/ejhs.v30i2.13	2020
Phylogeny	Streptomyces erringtonii sp. nov. and Streptomyces kaempferi sp. nov., isolated from a hay meadow soil.	Santhanam R, Rong X, Huang Y, Goodfellow M	Antonie Van Leeuwenhoek	10.1007/s10482-012-9788-x	2012
Phylogeny	Streptomyces glauciniger sp. nov., a novel mesophilic streptomycete isolated from soil in south China.	Huang Y, Li W, Wang L, Lanoot B, Vancanneyt M, Rodriguez C, Liu Z, Swings J, Goodfellow M	Int J Syst Evol Microbiol	10.1099/ijs.0.63158-0	2004

References

#10530	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 41867
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#27585	IJSEM 2085 2004 ( DOI 10.1099/ijs.0.63158-0 , PubMed 15545439 )
#31264	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27585
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Streptomyces glauciniger (DSM 41867, AS 4.1858, JCM 12278)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900188405

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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