Name: Streptomyces yeochonensis DSM 41868
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16411

Type strain:

Species: Streptomyces yeochonensis

Culture col. no.: DSM 41868, IMSNU 50114, KCTC 9926, NRRL B-24245, CN 732, JCM 12366, NBRC 100782

Strain history: <- SB Kim <- CN Seong

SI-ID 107665

KCTC 9926, NRRL B-24245, NBRC 100782, JCM 12366, DSM 41868

Section

Streptomyces yeochonensis DSM 41868 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from acidic soil.

Gram-positive
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces yeochonensis**
	Full Scientific Name (LPSN)	Streptomyces yeochonensis Kim et al. 2004

Synonym

Actinacidiphila yeochonensis

Information on morphological and physiological properties Morphology

[Ref.: #29899]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive

[Ref.: #29899]	Motility	no

[Ref.: #29899]

Pigment production

Multimedia content

[Ref.: #10531]

Caption:

Medium 65 pH5.5 28°C

[Ref.: #10531]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #10531]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #10531]

Culture medium growth

[Ref.: #10531]

Culture medium link

Medium recipe at MediaDive

[Ref.: #10531]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #10531]	growth	28 °C
[Ref.: #29899]	growth	25-37 °C
[Ref.: #29899]	optimum	31 °C
[Ref.: #67770]	growth	28 °C
[Ref.: #67771]	growth	28 °C

[Ref.: #10531]	Temperature range	mesophilic
[Ref.: #29899]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29899]			optimum	5.8
[Ref.: #29899]			growth	4.3-7.3

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29899]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #67771]	Type of spore	spore
[Ref.: #67771]	Ability of spore formation	yes
[Ref.: #29899]	Ability of spore formation	no

[Ref.: #29899]	Observation	aggregates in chains
[Ref.: #67770]	Observation	quinones: MK-9(H₆), MK-9(H₈)
[Ref.: #67771]	Observation	quinones: MK-9(H6), MK-9(H8)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29899]	gluconate ChEBI	+	carbon source
[Ref.: #29899]	lactate ChEBI	+	carbon source
[Ref.: #29899]	malate ChEBI	+	carbon source
[Ref.: #29899]	maltose ChEBI	+	carbon source
[Ref.: #29899]	pyruvate ChEBI	+	carbon source
[Ref.: #29899]	salicin ChEBI	+	carbon source
[Ref.: #29899]	succinate ChEBI	+	carbon source
[Ref.: #29899]	tween 80 ChEBI	+	carbon source

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #10531]	Sample type/isolated from	acidic soil
[Ref.: #10531]	Geographic location (country and/or sea, region)	Yeochon region
[Ref.: #10531]	Country	Republic of Korea
[Ref.: #10531]	Country ISO 3 Code	KOR
[Ref.: #10531]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Acidic soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Yeochon area
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From Soil
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Condition	#Acidic	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #10531]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces yeochonensis gene for 16S rRNA, partial sequence, strain: NBRC 100782	AB249943	1480	ENA	89050 tax ID
[Ref.: #10531]	Streptomyces sp. CN732 16S ribosomal RNA gene, partial sequence	AF101415	1489	ENA	89050 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Actinacidiphila yeochonensis CN732	GCA_000745345	contig	GenBank	1449355 tax ID

[Ref.: #67770]

GC-content

73.6 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Actinacidiphila yeochonensis CN732 CN732 NCBI: GCA_000745345.1
[Ref.: #69480]	motile	no	95.322	yes
[Ref.: #69480]	flagellated	no	97.321	yes
[Ref.: #69480]	gram-positive	yes	89.927	yes
[Ref.: #69480]	anaerobic	no	99.003	no
[Ref.: #69480]	aerobic	yes	88.503	no
[Ref.: #69480]	halophile	no	93.924	no
[Ref.: #69480]	spore-forming	yes	94.401	no
[Ref.: #69480]	glucose-util	yes	88.367	no
[Ref.: #69480]	thermophile	no	96.534	yes
[Ref.: #69480]	glucose-ferment	no	87.167	no

Availability in culture collections External links

[Ref.: #10531]

Culture collection no.

DSM 41868, IMSNU 50114, KCTC 9926, NRRL B-24245, CN 732, JCM 12366, NBRC 100782

[Ref.: #85458]

SI-ID 107665

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces buecherae sp. nov., an actinomycete isolated from multiple bat species.	Hamm PS, Dunlap CA, Mullowney MW, Caimi NA, Kelleher NL, Thomson RJ, Porras-Alfaro A, Northup DE	Antonie Van Leeuwenhoek	10.1007/s10482-020-01493-4	2020	*
Phylogeny	Genome-based analysis for the bioactive potential of Streptomyces yeochonensis CN732, an acidophilic filamentous soil actinobacterium.	Malik A, Kim YR, Jang IH, Hwang S, Oh DC, Kim SB	BMC Genomics	10.1186/s12864-020-6468-5	2020	*
Phylogeny	Taxonomic study of neutrotolerant acidophilic actinomycetes isolated from soil and description of Streptomyces yeochonensis sp. nov.	Kim SB, Seong CN, Jeon SJ, Bae KS, Goodfellow M	Int J Syst Evol Microbiol	10.1099/ijs.0.02519-0	2004	*

References

#10531

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 41868

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29899

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26271 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#85458

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID107665.1 )

#26271

IJSEM 211 2004 ( DOI 10.1099/ijs.0.02519-0 , PubMed 14742482 )

* These data were automatically processed and therefore are not curated

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Actinacidiphila yeochonensis CN732 CN732

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