Streptomyces yeochonensis (DSM 41868, IMSNU 50114, KCTC 9926)

Name: Streptomyces yeochonensis (DSM 41868, IMSNU 50114, KCTC 9926)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 16411

Type strain

Culture col. no. DSM 41868 IMSNU 50114 KCTC 9926 NRRL B-24245 CN 732 2 more

NCBI tax ID(s) 89050

Special Collections DSMZ JCM KCTC Literature strains

History DSMZ <- NRRL <- S. B. Kim; CN 732 JCM <-- KCTC 9926 <-- S. B. Kim CN732 <-- C. N. Seong. KCTC <- SB Kim <- CN Seong

Links

Streptomyces yeochonensis DSM 41868 is an aerobe, Gram-positive bacterium that was isolated from acidic soil.

Gram-positive aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 107665

KCTC 9926,NRRL B-24245,NBRC 100782,JCM 12366,DSM 41868

@ref 20215

Last LPSN update 2026-05-29 08:28:46

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptomyces

Species Streptomyces yeochonensis

Full scientific name Streptomyces yeochonensis Kim et al. 2004

Synonyms (1)

Actinacidiphila yeochonensis

Morphology

Cell morphology

@ref	Gram stain	Confidence
29899	positive
67771	positive
125438	positive	91.451
125439		94.348
125439	positive	99.52

Pigmentation

29899

Productionno

Multimedia

@ref:	10531
multimedia content:	DSM_41868.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_41868.jpg
caption:	Medium 65 pH5.5 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
10531	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
10531	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)		Medium recipe at MediaDive	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
10531	positive	growth	28
29899	positive	growth	25-37
29899	positive	optimum	31
67770	positive	growth	28
67771	positive	growth	28

Culture pH

@ref	Ability	Type	PH
29899	positive	optimum	5.8
29899	positive	growth	4.3-7.3

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
29899	aerobe
67771	aerobe
125439	obligate aerobe	98.873

Spore formation

@ref	Type of spore	Spore formation
29899
67771	spore

Observation

@ref	Observation
29899	aggregates in chains
67770	quinones: MK-9(H₆), MK-9(H₈)
67771	quinones: MK-9(H6), MK-9(H8)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29899	24265 ChEBI	gluconate	+	carbon source
29899	24996 ChEBI	lactate	+	carbon source
29899	25115 ChEBI	malate	+	carbon source
29899	17306 ChEBI	maltose	+	carbon source
29899	15361 ChEBI	pyruvate	+	carbon source
29899	17814 ChEBI	salicin	+	carbon source
29899	30031 ChEBI	succinate	+	carbon source
29899	53426 ChEBI	tween 80	+	carbon source

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil
#Condition	#Acidic	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
10531	acidic soil	Yeochon region	Republic of Korea	KOR	Asia
67770	Acidic soil	Yeochon area	Republic of Korea	KOR	Asia
67771	From Soil		Republic of Korea	KOR	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
10531	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM74534v1 assembly for Actinacidiphila yeochonensis CN732	contig	GCA_000745345	1449355.3	2574179744	1449355	75.46

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
10531	Streptomyces sp. CN732 16S ribosomal RNA gene, partial sequence	AF101415	1489		89050
67770	Streptomyces yeochonensis gene for 16S rRNA, partial sequence, strain: NBRC 100782	AB249943	1480		89050

GC content

@ref	GC-content (mol%)	Method
67770	73.6	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM74534v1 assembly for Actinacidiphila yeochonensis CN732
NCBI: GCA_000745345

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	gram_stain	BacteriaNetⓘ	positive	99.52	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.87	no
125439	motility	BacteriaNetⓘ	no	94.35	no
125439	spore_formation	BacteriaNetⓘ	yes	89.77	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Actinacidiphila yeochonensis CN732 CN732
NCBI: GCA_000745345.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	91.45	no
125438	anaerobic	anaerobicⓘ	no	95.31	yes
125438	aerobic	aerobicⓘ	yes	89.33	no
125438	spore-forming	spore-formingⓘ	yes	89.79	no
125438	thermophilic	thermophileⓘ	no	93.44	no
125438	flagellated	motile2+ⓘ	no	89.60	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Signalling and Bioactive Metabolites from Streptomyces sp. RK44.	Fang Q, Maglangit F, Wu L, Ebel R, Kyeremeh K, Andersen JH, Annang F, Perez-Moreno G, Reyes F, Deng H.	Molecules	10.3390/molecules25030460	2020
Phylogeny	Genome-based analysis for the bioactive potential of Streptomyces yeochonensis CN732, an acidophilic filamentous soil actinobacterium.	Malik A, Kim YR, Jang IH, Hwang S, Oh DC, Kim SB	BMC Genomics	10.1186/s12864-020-6468-5	2020
Phylogeny	Streptomyces buecherae sp. nov., an actinomycete isolated from multiple bat species.	Hamm PS, Dunlap CA, Mullowney MW, Caimi NA, Kelleher NL, Thomson RJ, Porras-Alfaro A, Northup DE	Antonie Van Leeuwenhoek	10.1007/s10482-020-01493-4	2020
Phylogeny	Taxonomic study of neutrotolerant acidophilic actinomycetes isolated from soil and description of Streptomyces yeochonensis sp. nov.	Kim SB, Seong CN, Jeon SJ, Bae KS, Goodfellow M	Int J Syst Evol Microbiol	10.1099/ijs.0.02519-0	2004

References

#10531	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 41868
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26271	IJSEM 211 2004 ( DOI 10.1099/ijs.0.02519-0 , PubMed 14742482 )
#29899	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26271
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Streptomyces yeochonensis (DSM 41868, IMSNU 50114, KCTC 9926)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Metabolite utilization

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000745345

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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