Strain identifier

BacDive ID: 16411

Type strain: Yes

Species: Streptomyces yeochonensis

Strain history: <- SB Kim <- CN Seong

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General

@ref: 10531

BacDive-ID: 16411

DSM-Number: 41868

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive

description: Streptomyces yeochonensis DSM 41868 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from acidic soil.

strain history

@refhistory
10531<- NRRL <- S. B. Kim; CN 732
67770KCTC 9926 <-- S. B. Kim CN732 <-- C. N. Seong.
67771<- SB Kim <- CN Seong

doi: 10.13145/bacdive16411.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces yeochonensis
  • full scientific name: Streptomyces yeochonensis Kim et al. 2004

  • synonyms

    • @ref: 20215
    • synonym: Actinacidiphila yeochonensis

@ref: 10531

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces yeochonensis

full scientific name: Streptomyces yeochonensis Kim et al. 2004 emend. Nouioui et al. 2018

type strain: yes

Morphology

cell morphology

@refgram stainmotility
29899positiveno
67771positive

pigmentation

  • @ref: 29899
  • production: no

multimedia

  • @ref: 10531
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_41868.jpg
  • caption: Medium 65 pH5.5 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

  • @ref: 10531
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
10531positivegrowth28mesophilic
29899positivegrowth25-37mesophilic
29899positiveoptimum31mesophilic
67770positivegrowth28mesophilic
67771positivegrowth28mesophilic

culture pH

@refabilitytypepH
29899positivegrowth4.3-7.3
29899positiveoptimum5.8

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
29899aerobe
67771aerobe

spore formation

@refspore formationtype of spore
29899no
67771yesspore

observation

@refobservation
29899aggregates in chains
67770quinones: MK-9(H6), MK-9(H8)
67771quinones: MK-9(H6), MK-9(H8)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2989924265gluconate+carbon source
2989924996lactate+carbon source
2989925115malate+carbon source
2989917306maltose+carbon source
2989915361pyruvate+carbon source
2989917814salicin+carbon source
2989930031succinate+carbon source
2989953426tween 80+carbon source

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
10531acidic soilYeochon regionRepublic of KoreaKORAsia
67770Acidic soilYeochon areaRepublic of KoreaKORAsia
67771From SoilRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Condition#Acidic

Safety information

risk assessment

  • @ref: 10531
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
10531Streptomyces sp. CN732 16S ribosomal RNA gene, partial sequenceAF1014151489ena89050
67770Streptomyces yeochonensis gene for 16S rRNA, partial sequence, strain: NBRC 100782AB2499431480ena89050

Genome sequences

  • @ref: 67770
  • description: Actinacidiphila yeochonensis CN732
  • accession: GCA_000745345
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 1449355

GC content

  • @ref: 67770
  • GC-content: 73.6
  • method: genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno95.322yes
flagellatedno97.321yes
gram-positiveyes89.927yes
anaerobicno99.003no
aerobicyes88.503no
halophileno93.924no
spore-formingyes94.401no
glucose-utilyes88.367no
thermophileno96.534yes
glucose-fermentno87.167no

External links

@ref: 10531

culture collection no.: DSM 41868, IMSNU 50114, KCTC 9926, NRRL B-24245, CN 732, JCM 12366, NBRC 100782

straininfo link

  • @ref: 85458
  • straininfo: 107665

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny14742482Taxonomic study of neutrotolerant acidophilic actinomycetes isolated from soil and description of Streptomyces yeochonensis sp. nov.Kim SB, Seong CN, Jeon SJ, Bae KS, Goodfellow MInt J Syst Evol Microbiol10.1099/ijs.0.02519-02004Actinomycetales/*classification/isolation & purification, DNA, Ribosomal/genetics, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, *Soil Microbiology, Streptomyces/*classification/isolation & purification, Terminology as TopicEnzymology
Phylogeny32013859Genome-based analysis for the bioactive potential of Streptomyces yeochonensis CN732, an acidophilic filamentous soil actinobacterium.Malik A, Kim YR, Jang IH, Hwang S, Oh DC, Kim SBBMC Genomics10.1186/s12864-020-6468-52020Genomics/methods, Multigene Family/*genetics, Phylogeny, Soil, Soil Microbiology, Streptomyces/*geneticsGenetics
Phylogeny33200278Streptomyces buecherae sp. nov., an actinomycete isolated from multiple bat species.Hamm PS, Dunlap CA, Mullowney MW, Caimi NA, Kelleher NL, Thomson RJ, Porras-Alfaro A, Northup DEAntonie Van Leeuwenhoek10.1007/s10482-020-01493-42020Animals, Ascomycota, Bacterial Typing Techniques, Base Composition, Chiroptera/*microbiology, DNA, Bacterial/genetics, New Mexico, Phylogeny, Sequence Analysis, DNA, Streptomyces/*classification/genetics/*isolation & purificationTranscriptome

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
10531Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 41868)https://www.dsmz.de/collection/catalogue/details/culture/DSM-41868
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
29899Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2627128776041
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
85458Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID107665.1StrainInfo: A central database for resolving microbial strain identifiers