Strain identifier
BacDive ID: 16410
Type strain: 
Species: Streptomyces glauciniger
Strain Designation: FXJ 14
Strain history: Y. Huang FXJ14.
NCBI tax ID(s): 235986 (species)
version 9.1 (current version)
General
@ref: 10530
BacDive-ID: 16410
DSM-Number: 41867
keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, Gram-positive
description: Streptomyces glauciniger FXJ 14 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from soil in a willow wood.
NCBI tax id
- NCBI tax id: 235986
- Matching level: species
strain history
| @ref | history |
|---|---|
| 10530 | <- Z. Liu; AS 4.1858 <- Y. Huang; FXJ 14 |
| 67770 | Y. Huang FXJ14. |
doi: 10.13145/bacdive16410.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces glauciniger
- full scientific name: Streptomyces glauciniger Huang et al. 2004
synonyms
- @ref: 20215
- synonym: Actinacidiphila glaucinigra
@ref: 10530
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces glauciniger
full scientific name: Streptomyces glauciniger Huang et al. 2004
strain designation: FXJ 14
type strain: yes
Morphology
cell morphology
| @ref | gram stain | confidence |
|---|---|---|
| 31264 | positive | |
| 69480 | positive | 90.09 |
pigmentation
- @ref: 31264
- production: no
multimedia
- @ref: 10530
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_41867.jpg
- caption: Medium 65 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 10530 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
| 10530 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | yes | https://mediadive.dsmz.de/medium/84 | Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water |
| 10530 | STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) | yes | https://mediadive.dsmz.de/medium/252 | Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water |
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 10530 | positive | growth | 28 |
| 31264 | positive | growth | 10-35 |
| 31264 | positive | optimum | 22.5 |
| 67770 | positive | growth | 28 |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 31264 | positive | growth | 05-10 | alkaliphile |
| 31264 | positive | optimum | 7.5 |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 31264 | aerobe | |
| 69480 | aerobe | 90.642 |
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 31264 | yes | |
| 69480 | yes | 90.522 |
| 69481 | yes | 100 |
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 31264 | NaCl | positive | growth | 0-5 % |
| 31264 | NaCl | positive | optimum | 2.5 % |
observation
- @ref: 67770
- observation: quinones: MK-9(H6), MK-9(H8)
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 31264 | 30089 | acetate | + | carbon source |
| 31264 | 22599 | arabinose | + | carbon source |
| 31264 | 16947 | citrate | + | carbon source |
| 31264 | 23652 | dextrin | + | carbon source |
| 31264 | 28757 | fructose | + | carbon source |
| 31264 | 28260 | galactose | + | carbon source |
| 31264 | 17234 | glucose | + | carbon source |
| 31264 | 29864 | mannitol | + | carbon source |
| 31264 | 16634 | raffinose | + | carbon source |
| 31264 | 26546 | rhamnose | + | carbon source |
| 31264 | 17992 | sucrose | + | carbon source |
| 31264 | 18222 | xylose | + | carbon source |
| 31264 | 17632 | nitrate | + | reduction |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 10530 | soil in a willow wood | Guangxi Province, Nanning City | China | CHN | Asia |
| 67770 | Soil from willow woods | Nanning, Guangxi Province | China | CHN | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Soil |
| #Host | #Plants | #Tree |
Safety information
risk assessment
- @ref: 10530
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Streptomyces glauciniger gene for 16S rRNA, partial sequence, strain: NBRC 100913 | AB249964 | 1472 | nuccore | 235986 |
| 10530 | Streptomyces glauciniger strain FXJ14 16S ribosomal RNA gene, partial sequence | AY314782 | 1428 | nuccore | 235986 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Streptomyces glauciniger strain CGMCC 4.1858 | 235986.3 | wgs | patric | 235986 |
| 66792 | Streptomyces glauciniger CGMCC 4.1858 | 2671180020 | draft | img | 235986 |
| 67770 | Actinacidiphila glaucinigra CGMCC 4.1858 | GCA_900188405 | scaffold | ncbi | 235986 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 10530 | 67.0 | |
| 31264 | 67 | |
| 67770 | 67 | thermal denaturation, midpoint method (Tm) |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69481 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 100 | no |
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 90.09 | yes |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 97.361 | yes |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 90.522 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 90.642 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 93.5 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 88.5 | no |
External links
@ref: 10530
culture collection no.: DSM 41867, AS 4.1858, JCM 12278, LMG 22082, NBRC 100913, CGMCC 4.1858, NRRL B-24320
straininfo link
- @ref: 85457
- straininfo: 134446
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 15545439 | Streptomyces glauciniger sp. nov., a novel mesophilic streptomycete isolated from soil in south China. | Huang Y, Li W, Wang L, Lanoot B, Vancanneyt M, Rodriguez C, Liu Z, Swings J, Goodfellow M | Int J Syst Evol Microbiol | 10.1099/ijs.0.63158-0 | 2004 | Bacterial Typing Techniques, China, DNA Fingerprinting, DNA, Bacterial/chemistry/isolation & purification, DNA, Ribosomal/chemistry/isolation & purification, DNA, Ribosomal Spacer/chemistry/isolation & purification, Genes, rRNA, Molecular Sequence Data, Phylogeny, Polymerase Chain Reaction, Polymorphism, Restriction Fragment Length, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/cytology/*isolation & purification/physiology | Enzymology |
| Phylogeny | 22865027 | Streptomyces erringtonii sp. nov. and Streptomyces kaempferi sp. nov., isolated from a hay meadow soil. | Santhanam R, Rong X, Huang Y, Goodfellow M | Antonie Van Leeuwenhoek | 10.1007/s10482-012-9788-x | 2012 | Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/*isolation & purification/physiology | Genetics |
| Pathogenicity | 32165815 | Potentials of Actinomycetes from Reserved Environments as Antibacterial Agents Against Drug-Resistant Clinical Bacterial Strains. | Ahmed RN, Daniel F, Gbala ID, Sanni A | Ethiop J Health Sci | 10.4314/ejhs.v30i2.13 | 2020 | Actinobacteria/*physiology, Anti-Bacterial Agents/*pharmacology, Cells, Cultured/microbiology, Drug Resistance, Multiple, Bacterial/*drug effects, Methicillin-Resistant Staphylococcus aureus/*drug effects, Nigeria, *Soil Microbiology |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed | ID_cross_reference |
|---|---|---|---|---|---|---|---|
| 10530 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 41867) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-41867 | ||||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | ||||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | ||
| 31264 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 28776041 | 27585 | ||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | ||||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | ||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |||||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | ||||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | ||||
| 85457 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID134446.1 | StrainInfo: A central database for resolving microbial strain identifiers |