Strain identifier

BacDive ID: 16410

Type strain: Yes

Species: Streptomyces glauciniger

Strain Designation: FXJ 14

Strain history: Y. Huang FXJ14.

NCBI tax ID(s): 235986 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 10530

BacDive-ID: 16410

DSM-Number: 41867

keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive

description: Streptomyces glauciniger FXJ 14 is an aerobe, spore-forming, mesophilic bacterium that was isolated from soil in a willow wood.

NCBI tax id

  • NCBI tax id: 235986
  • Matching level: species

strain history

@refhistory
10530<- Z. Liu; AS 4.1858 <- Y. Huang; FXJ 14
67770Y. Huang FXJ14.

doi: 10.13145/bacdive16410.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces glauciniger
  • full scientific name: Streptomyces glauciniger Huang et al. 2004

  • synonyms

    • @ref: 20215
    • synonym: Actinacidiphila glaucinigra

@ref: 10530

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces glauciniger

full scientific name: Streptomyces glauciniger Huang et al. 2004

strain designation: FXJ 14

type strain: yes

Morphology

cell morphology

@refgram stainmotilityconfidence
31264positive
69480no90.502
69480positive100

pigmentation

  • @ref: 31264
  • production: no

multimedia

  • @ref: 10530
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_41867.jpg
  • caption: Medium 65 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
10530GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
10530ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://mediadive.dsmz.de/medium/84Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
10530STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)yeshttps://mediadive.dsmz.de/medium/252Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
10530positivegrowth28mesophilic
31264positivegrowth10-35
31264positiveoptimum22.5psychrophilic
67770positivegrowth28mesophilic

culture pH

@refabilitytypepHPH range
31264positivegrowth05-10alkaliphile
31264positiveoptimum7.5

Physiology and metabolism

oxygen tolerance

  • @ref: 31264
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
31264yes
69481yes100
69480yes100

halophily

@refsaltgrowthtested relationconcentration
31264NaClpositivegrowth0-5 %
31264NaClpositiveoptimum2.5 %

observation

  • @ref: 67770
  • observation: quinones: MK-9(H6), MK-9(H8)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3126430089acetate+carbon source
3126422599arabinose+carbon source
3126416947citrate+carbon source
3126423652dextrin+carbon source
3126428757fructose+carbon source
3126428260galactose+carbon source
3126417234glucose+carbon source
3126429864mannitol+carbon source
3126416634raffinose+carbon source
3126426546rhamnose+carbon source
3126417992sucrose+carbon source
3126418222xylose+carbon source
3126417632nitrate+reduction

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
10530soil in a willow woodGuangxi Province, Nanning CityChinaCHNAsia
67770Soil from willow woodsNanning, Guangxi ProvinceChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Host#Plants#Tree

Safety information

risk assessment

  • @ref: 10530
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces glauciniger gene for 16S rRNA, partial sequence, strain: NBRC 100913AB2499641472ena235986
10530Streptomyces glauciniger strain FXJ14 16S ribosomal RNA gene, partial sequenceAY3147821428ena235986

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces glauciniger strain CGMCC 4.1858235986.3wgspatric235986
66792Streptomyces glauciniger CGMCC 4.18582671180020draftimg235986
67770Actinacidiphila glaucinigra CGMCC 4.1858GCA_900188405scaffoldncbi235986

GC content

@refGC-contentmethod
1053067.0
3126467
6777067thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
motileno93.445no
gram-positiveyes88.868yes
anaerobicno99.003no
aerobicyes92.665no
halophileno95.346no
spore-formingyes93.331yes
glucose-utilyes88.969yes
flagellatedno98.214no
thermophileno98.939yes
glucose-fermentno88.624no

External links

@ref: 10530

culture collection no.: DSM 41867, AS 4.1858, JCM 12278, LMG 22082, NBRC 100913, CGMCC 4.1858, NRRL B-24320

straininfo link

  • @ref: 85457
  • straininfo: 134446

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny15545439Streptomyces glauciniger sp. nov., a novel mesophilic streptomycete isolated from soil in south China.Huang Y, Li W, Wang L, Lanoot B, Vancanneyt M, Rodriguez C, Liu Z, Swings J, Goodfellow MInt J Syst Evol Microbiol10.1099/ijs.0.63158-02004Bacterial Typing Techniques, China, DNA Fingerprinting, DNA, Bacterial/chemistry/isolation & purification, DNA, Ribosomal/chemistry/isolation & purification, DNA, Ribosomal Spacer/chemistry/isolation & purification, Genes, rRNA, Molecular Sequence Data, Phylogeny, Polymerase Chain Reaction, Polymorphism, Restriction Fragment Length, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/cytology/*isolation & purification/physiologyEnzymology
Phylogeny22865027Streptomyces erringtonii sp. nov. and Streptomyces kaempferi sp. nov., isolated from a hay meadow soil.Santhanam R, Rong X, Huang Y, Goodfellow MAntonie Van Leeuwenhoek10.1007/s10482-012-9788-x2012Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/*isolation & purification/physiologyGenetics
Pathogenicity32165815Potentials of Actinomycetes from Reserved Environments as Antibacterial Agents Against Drug-Resistant Clinical Bacterial Strains.Ahmed RN, Daniel F, Gbala ID, Sanni AEthiop J Health Sci10.4314/ejhs.v30i2.132020Actinobacteria/*physiology, Anti-Bacterial Agents/*pharmacology, Cells, Cultured/microbiology, Drug Resistance, Multiple, Bacterial/*drug effects, Methicillin-Resistant Staphylococcus aureus/*drug effects, Nigeria, *Soil Microbiology

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
10530Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 41867)https://www.dsmz.de/collection/catalogue/details/culture/DSM-41867
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
31264Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2877604127585
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
85457Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID134446.1StrainInfo: A central database for resolving microbial strain identifiers