Tetragenococcus halophilus (NISL 7116, IAM 1678, JCM 20249)

Name: Tetragenococcus halophilus (NISL 7116, IAM 1678, JCM 20249)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 162823

Type strain

Culture col. no. NISL 7116 IAM 1678 JCM 20249

NCBI tax ID(s) 51669

Special Collections JCM

History JCM <-- IAM 1678 <-- K. Sakaguchi d-2 ("Pediococcus soyae").

Links

Tetragenococcus halophilus JCM 20249 is a bacterium that was isolated from Soy sauce brewing mashes.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 12123

LMG 18524,IAM 1678,JCM 20249

@ref 20215

Last LPSN update 2026-05-29 08:45:01

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Enterococcaceae

Genus Tetragenococcus

Species Tetragenococcus halophilus

Full scientific name Tetragenococcus halophilus (Mees 1934) Collins et al. 1993

Synonyms (1)

Pediococcus halophilus

BacDive ID	Other strains from **Tetragenococcus halophilus** (26)	Type strain
145984	T. halophilus CCUG 30089
147215	T. halophilus CCUG 33069
153369	T. halophilus CCUG 49357
153961	T. halophilus CCUG 51777
154280	T. halophilus CCUG 52959
154281	T. halophilus CCUG 52960
154317	T. halophilus CCUG 53046
154634	T. halophilus CCUG 54657
162452	T. halophilus JCM 19268
162453	T. halophilus JCM 19269
162790	T. halophilus JCM 2016, TISTR 346
162795	T. halophilus JCM 2017
162801	T. halophilus JCM 2018
162805	T. halophilus JCM 2019
162809	T. halophilus JCM 2020
162821	T. halophilus JCM 20246, IAM 1674, NISL 7118
162822	T. halophilus JCM 20247, IAM 1675, NISL 7126
162824	T. halophilus JCM 20250, ATCC 13622, IAM 1681
162825	T. halophilus JCM 20251, IAM 1682, NISL 7119
162826	T. halophilus JCM 20254, ATCC 13623, IAM 1685
162827	T. halophilus JCM 20255, IAM 1686, NISL 7120
162828	T. halophilus JCM 20256, ATCC 13624, IAM 1688
162829	T. halophilus JCM 20257, IAM 1689, NISL 7121
162830	T. halophilus JCM 20258, IAM 1692
162832	T. halophilus JCM 20260, IAM 1698, NISL 7123
162833	T. halophilus JCM 20261, IAM 1702, NISL 7125

Morphology

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.425

Isolation, sampling and environmental information

Isolation

67770

Sample typeSoy sauce brewing mashes

Taxonmaps

69479

Global distribution of 16S sequence AB911546 (>99% sequence identity) for Tetragenococcus halophilus from Microbeatlas

Aquatic Samples	1678
Soil Samples	861
Animal Samples	20165
Plant Samples	532
Total Samples	23236

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM292286v1 assembly for Tetragenococcus halophilus subsp. halophilus NISL 7116	contig	GCA_002922865	1513897.12	2894475319	1513897	12.54

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Tetragenococcus halophilus gene for 16S rRNA, partial sequence, strain: JCM 20249	AB911546	1522		51669

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM292286v1 assembly for Tetragenococcus halophilus subsp. halophilus NISL 7116
NCBI: GCA_002922865

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.43	no
125439	gram_stain	BacteriaNetⓘ	positive	52.60	no
125439	motility	BacteriaNetⓘ	yes	55.09	no
125439	spore_formation	BacteriaNetⓘ	yes	59.19	no

Literature

Title	Authors	Journal	DOI	Year
Characterization of an Aminopeptidase A from Tetragenococcus halophilus CY54 Isolated from Myeolchi-Jeotgal.	Kim TJ, Kim MJ, Kang YJ, Yoo JY, Kim JH.	J Microbiol Biotechnol	10.4014/jmb.2210.10003	2023

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Tetragenococcus halophilus (NISL 7116, IAM 1678, JCM 20249)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_002922865

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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