Name: Lacticaseibacillus rhamnosus JCM 1553
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 161603

Type strain:

Species: Lacticaseibacillus rhamnosus

Culture col. no.: JCM 1553, ATCC 11443, BCRC 12321

Strain history: ATCC 11443 <-- M. Brin (Lactobacillus delbrueckii).

NCBI tax ID(s): 47715 (species)

SI-ID 35362

ATCC 11443, JCM 1553, VTT E-93444, NCDO 1856, CCRC 12321, NCIMB 701856, KCTC 1109, NRRL B-11393, BCRC 12321

Special Collections

Other strains from Lacticaseibacillus rhamnosus

Section

Lacticaseibacillus rhamnosus JCM 1553 is a bacterium of the family Lactobacillaceae.

16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Lactobacillaceae*
	Genus	*Lacticaseibacillus*
	Species	**Lacticaseibacillus rhamnosus**
	Full Scientific Name (LPSN)	Lacticaseibacillus rhamnosus (Hansen 1968) Zheng et al. 2020

	Synonym	Lactobacillus casei subsp. rhamnosus
	Synonym	Lactobacillus rhamnosus

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %93.002

[Ref.: #69480]	Motility	no Confidence in %92.5

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

no Confidence in %96

[Ref.: #67770]

Observation

Assay of Optically active isomers of lactic acid

	Metabolite production	Metabolite	Production
[Ref.: #67770]		(S)-lactate ChEBI	yes

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #124043]	Lactobacillus rhamnosus gene for 16S rRNA, partial sequence, strain: JCM 1553.	AB289278	657	GenBank ENA	47715 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Lacticaseibacillus rhamnosus JCM1553	GCA_003433395	complete	GenBank ENA	47715 tax ID	*
[Ref.: #66792]	Lactobacillus rhamnosus strain ATCC 11443 strain JCM1553	47715.485	complete	PATRIC	47715 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Lactobacillus rhamnosus strain ATCC 11443 strain JCM1553 PATRIC: 47715.485
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	96	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lacticaseibacillus rhamnosus ATCC 11443 NCBI: GCA_003433395.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	93.002	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	83.12	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	90.681	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	79.346	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95.472	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	92.5	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 1553, ATCC 11443, BCRC 12321

[Ref.: #113466]

SI-ID 35362

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Comparative genomics and transcriptome analysis of Lactobacillus rhamnosus ATCC 11443 and the mutant strain SCT-10-10-60 with enhanced L-lactic acid production capacity.	Sun L, Lu Z, Li J, Sun F, Huang R	Mol Genet Genomics	10.1007/s00438-017-1379-0	2017	*
Enzymology	Molecular Cloning, Expression of minD Gene from Lactobacillus acidophilus VTCC-B-871 and Analyses to Identify Lactobacillus rhamnosus PN04 from Vietnam Hottuynia cordata Thunb.	Nguyen TH, Doan VT, Ha LD, Nguyen HN	Indian J Microbiol	10.1007/s12088-013-0384-1	2013	*
Genetics	Genome shuffling enhanced L-lactic acid production by improving glucose tolerance of Lactobacillus rhamnosus.	Yu L, Pei X, Lei T, Wang Y, Feng Y	J Biotechnol	10.1016/j.jbiotec.2008.01.008	2008	*
Genetics	Genome-shuffling improved acid tolerance and L-lactic acid volumetric productivity in Lactobacillus rhamnosus.	Wang Y, Li Y, Pei X, Yu L, Feng Y	J Biotechnol	10.1016/j.jbiotec.2007.01.011	2007	*
Metabolism	Citrate utilization by homo- and heterofermentative lactobacilli.	Medina de Figueroa R, Alvarez F, Pesce de Ruiz Holgado A, Oliver G, Sesma F	Microbiol Res	10.1016/S0944-5013(00)80005-1	2000	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#113466

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID35362.1 )

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

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Lactobacillus rhamnosus strain ATCC 11443 strain JCM1553

Lacticaseibacillus rhamnosus ATCC 11443

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