Lactobacillus rhamnosus JCM 1553 is a mesophilic prokaryote of the family Lactobacillaceae.
mesophilic genome sequence 16S sequence| @ref 20215 |
|
|
| Domain Bacillati |
| Phylum Bacillota |
| Class Bacilli |
| Order Lactobacillales |
| Family Lactobacillaceae |
| Genus Lactobacillus |
| Species Lactobacillus rhamnosus |
| Full scientific name Lactobacillus rhamnosus (Hansen 1968) Collins et al. 1989 |
| Synonyms (2) |
| @ref | Growth | Type | Temperature (°C) | Range | |
|---|---|---|---|---|---|
| 67770 | positive | growth | 37 | mesophilic |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|
| 66792 | ASM343339v1 assembly for Lacticaseibacillus rhamnosus ATCC 11443 | complete | 47715 | 97.98 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 124043 | Lactobacillus rhamnosus gene for 16S rRNA, partial sequence, strain: JCM 1553. | AB289278 | 657 | 47715 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 96.50 | no |
| 125439 | motility | BacteriaNetⓘ | no | 73.70 | no |
| 125439 | gram_stain | BacteriaNetⓘ | positive | 92.70 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | microaerophile | 98.80 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 93.00 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 83.12 | no |
| 125438 | aerobic | aerobicⓘ | no | 90.68 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 79.35 | no |
| 125438 | thermophilic | thermophileⓘ | no | 95.47 | no |
| 125438 | flagellated | motile2+ⓘ | no | 92.50 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Phylogeny | The global population stru cture of Lacticaseibacillus rhamnosus and its application to an investigation of a rare case of infective endocarditis. | Santoiemma PP, Cohn SE, Gatesy SWM, Hauser AR, Agrawal S, Theodorou ME, Bachta KER, Ozer EA. | PLoS One | 10.1371/journal.pone.0300843 | 2024 | |
| Prophylactic efficacy of probiotics and their metabolites against Staphylococcus epidermidis. | Phan A, Thapa K, Hashmi MA, Mohapatra A, Ho G, Tholan GN, Biswas D. | BMC Microbiol | 10.1186/s12866-025-04382-w | 2025 | ||
| Sodium Deoxycholate-Propidium Monoazide Droplet Digital PCR for Rapid and Quantitative Detection of Viable Lacticaseibacillus rhamnosus HN001 in Compound Probiotic Products. | Wang P, Liang L, Peng X, Qu T, Zhao X, Ji Q, Chen Y. | Microorganisms | 10.3390/microorganisms12081504 | 2024 | ||
| Quantitative PCR Assays for the Strain-Specific Identification and Enumeration of Probiotic Strain Lacticaseibacillus rhamnosus X253. | Zhao L, Zhang D, Liu Y, Zhang YN, Meng DQ, Xu Q, Zhong J, Jiang QY, Zhao Y, Wang SJ. | Foods | 10.3390/foods11152282 | 2022 | ||
| Metabolism | In Vitro Framework to Assess the Anti-Helicobacter pylori Potential of Lactic Acid Bacteria Secretions as Alternatives to Antibiotics. | Whiteside SA, Mohiuddin MM, Shlimon S, Chahal J, MacPherson CW, Jass J, Tompkins TA, Creuzenet C. | Int J Mol Sci | 10.3390/ijms22115650 | 2021 | |
| Genetics | Comparative genomics and transcriptome analysis of Lactobacillus rhamnosus ATCC 11443 and the mutant strain SCT-10-10-60 with enhanced L-lactic acid production capacity. | Sun L, Lu Z, Li J, Sun F, Huang R | Mol Genet Genomics | 10.1007/s00438-017-1379-0 | 2017 | |
| Enzymology | Molecular Cloning, Expression of minD Gene from Lactobacillus acidophilus VTCC-B-871 and Analyses to Identify Lactobacillus rhamnosus PN04 from Vietnam Hottuynia cordata Thunb. | Nguyen TH, Doan VT, Ha LD, Nguyen HN | Indian J Microbiol | 10.1007/s12088-013-0384-1 | 2013 | |
| Genetics | Genome shuffling enhanced L-lactic acid production by improving glucose tolerance of Lactobacillus rhamnosus. | Yu L, Pei X, Lei T, Wang Y, Feng Y | J Biotechnol | 10.1016/j.jbiotec.2008.01.008 | 2008 | |
| Genetics | Genome-shuffling improved acid tolerance and L-lactic acid volumetric productivity in Lactobacillus rhamnosus. | Wang Y, Li Y, Pei X, Yu L, Feng Y | J Biotechnol | 10.1016/j.jbiotec.2007.01.011 | 2007 | |
| Metabolism | Citrate utilization by homo- and heterofermentative lactobacilli. | Medina de Figueroa R, Alvarez F, Pesce de Ruiz Holgado A, Oliver G, Sesma F | Microbiol Res | 10.1016/S0944-5013(00)80005-1 | 2000 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
You found an error in BacDive? Please tell us about it!
Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.
Successfully sent
If you want to cite this particular strain cite the following doi:
https://doi.org/10.13145/bacdive161603.20251217.10
When using BacDive for research please cite the following paper
BacDive in 2025: the core database for prokaryotic strain data