Strain identifier

BacDive ID: 161603

Type strain: No

Species: Lacticaseibacillus rhamnosus

Strain history: ATCC 11443 <-- M. Brin (Lactobacillus delbrueckii).

NCBI tax ID(s): 47715 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 67770

BacDive-ID: 161603

keywords: genome sequence, 16S sequence, Bacteria

description: Lacticaseibacillus rhamnosus JCM 1553 is a bacterium of the family Lactobacillaceae.

NCBI tax id

  • NCBI tax id: 47715
  • Matching level: species

strain history

  • @ref: 67770
  • history: ATCC 11443 <-- M. Brin (Lactobacillus delbrueckii).

doi: 10.13145/bacdive161603.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Lacticaseibacillus
  • species: Lacticaseibacillus rhamnosus
  • full scientific name: Lacticaseibacillus rhamnosus (Hansen 1968) Zheng et al. 2020
  • synonyms

    @refsynonym
    20215Lactobacillus casei subsp. rhamnosus
    20215Lactobacillus rhamnosus

@ref: 67770

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Lacticaseibacillus

species: Lacticaseibacillus rhamnosus

full scientific name: Lacticaseibacillus rhamnosus (Hansen 1968) Zheng et al. 2020

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no92.5
6948093.002positive

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 37

Physiology and metabolism

spore formation

  • @ref: 69481
  • spore formation: no
  • confidence: 96

observation

  • @ref: 67770
  • observation: Assay of Optically active isomers of lactic acid

metabolite production

  • @ref: 67770
  • Chebi-ID: 16651
  • metabolite: (S)-lactate
  • production: yes

Sequence information

16S sequences

  • @ref: 124043
  • description: Lactobacillus rhamnosus gene for 16S rRNA, partial sequence, strain: JCM 1553.
  • accession: AB289278
  • length: 657
  • database: nuccore
  • NCBI tax ID: 47715

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Lacticaseibacillus rhamnosus JCM1553GCA_003433395completencbi47715
66792Lactobacillus rhamnosus strain ATCC 11443 strain JCM155347715.485completepatric47715

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69481spore-formingspore-formingAbility to form endo- or exosporesno96no
69480gram-positivegram-positivePositive reaction to Gram-stainingyes93.002no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no83.12no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no90.681no
69480spore-formingspore-formingAbility to form endo- or exosporesno79.346no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno95.472no
69480flagellatedmotile2+Ability to perform flagellated movementno92.5no

External links

@ref: 67770

culture collection no.: JCM 1553, ATCC 11443, BCRC 12321

straininfo link

  • @ref: 113466
  • straininfo: 35362

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Metabolism10772153Citrate utilization by homo- and heterofermentative lactobacilli.Medina de Figueroa R, Alvarez F, Pesce de Ruiz Holgado A, Oliver G, Sesma FMicrobiol Res10.1016/S0944-5013(00)80005-12000Acetoin/metabolism, *Bacterial Proteins, Biological Transport, Carrier Proteins/genetics/metabolism, Citrates/*metabolism, Culture Media, Diacetyl/metabolism, Fermentation, Genes, Bacterial, Glucose/metabolism, Lactobacillus/genetics/growth & development/*metabolism, SymportersCultivation
Genetics17320995Genome-shuffling improved acid tolerance and L-lactic acid volumetric productivity in Lactobacillus rhamnosus.Wang Y, Li Y, Pei X, Yu L, Feng YJ Biotechnol10.1016/j.jbiotec.2007.01.0112007*Bioreactors, Biotechnology/*methods, Cell Count, Genome, Bacterial/*drug effects/*radiation effects, Glucose/analysis, Lactic Acid/*biosynthesis, Lactobacillus rhamnosus/*genetics/*metabolism, Mutagenesis, Nitrosoguanidines/toxicity, Ultraviolet RaysBiotechnology
Genetics18289712Genome shuffling enhanced L-lactic acid production by improving glucose tolerance of Lactobacillus rhamnosus.Yu L, Pei X, Lei T, Wang Y, Feng YJ Biotechnol10.1016/j.jbiotec.2008.01.0082008Bioreactors, DNA Shuffling, Genome, Bacterial/drug effects/*genetics/radiation effects, Glucose/*metabolism, Lactic Acid/*biosynthesis, Lactobacillus rhamnosus/*genetics/metabolism, Mutagenesis, Nitrosoguanidines/pharmacology, Ultraviolet RaysMetabolism
Enzymology24426140Molecular Cloning, Expression of minD Gene from Lactobacillus acidophilus VTCC-B-871 and Analyses to Identify Lactobacillus rhamnosus PN04 from Vietnam Hottuynia cordata Thunb.Nguyen TH, Doan VT, Ha LD, Nguyen HNIndian J Microbiol10.1007/s12088-013-0384-12013
Genetics29159508Comparative genomics and transcriptome analysis of Lactobacillus rhamnosus ATCC 11443 and the mutant strain SCT-10-10-60 with enhanced L-lactic acid production capacity.Sun L, Lu Z, Li J, Sun F, Huang RMol Genet Genomics10.1007/s00438-017-1379-02017Gene Expression Regulation, Bacterial, Genome, Bacterial, *Genomics, Lactic Acid/*biosynthesis, Lactobacillus rhamnosus/*genetics/metabolism, Metabolic Engineering, Mutation, Pyruvic Acid/metabolism, Transcriptome/*geneticsTranscriptome

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
113466Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID35362.1
124043Dr. Isabel Schober, Dr. Julia KoblitzData extracted from sequence databases, automatically matched based on designation and taxonomy