Strain identifier
BacDive ID: 161603
Type strain: 
Species: Lacticaseibacillus rhamnosus
Strain history: ATCC 11443 <-- M. Brin (Lactobacillus delbrueckii).
NCBI tax ID(s): 47715 (species)
version 9.1 (current version)
General
@ref: 67770
BacDive-ID: 161603
keywords: genome sequence, 16S sequence, Bacteria
description: Lacticaseibacillus rhamnosus JCM 1553 is a bacterium of the family Lactobacillaceae.
NCBI tax id
- NCBI tax id: 47715
- Matching level: species
strain history
- @ref: 67770
- history: ATCC 11443 <-- M. Brin (Lactobacillus delbrueckii).
doi: 10.13145/bacdive161603.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Lactobacillaceae
- genus: Lacticaseibacillus
- species: Lacticaseibacillus rhamnosus
- full scientific name: Lacticaseibacillus rhamnosus (Hansen 1968) Zheng et al. 2020
synonyms
@ref synonym 20215 Lactobacillus casei subsp. rhamnosus 20215 Lactobacillus rhamnosus
@ref: 67770
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Lactobacillaceae
genus: Lacticaseibacillus
species: Lacticaseibacillus rhamnosus
full scientific name: Lacticaseibacillus rhamnosus (Hansen 1968) Zheng et al. 2020
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 92.5 | |
| 69480 | 93.002 | positive |
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
Physiology and metabolism
spore formation
- @ref: 69481
- spore formation: no
- confidence: 96
observation
- @ref: 67770
- observation: Assay of Optically active isomers of lactic acid
metabolite production
- @ref: 67770
- Chebi-ID: 16651
- metabolite: (S)-lactate
- production: yes
Sequence information
16S sequences
- @ref: 124043
- description: Lactobacillus rhamnosus gene for 16S rRNA, partial sequence, strain: JCM 1553.
- accession: AB289278
- length: 657
- database: nuccore
- NCBI tax ID: 47715
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Lacticaseibacillus rhamnosus JCM1553 | GCA_003433395 | complete | ncbi | 47715 |
| 66792 | Lactobacillus rhamnosus strain ATCC 11443 strain JCM1553 | 47715.485 | complete | patric | 47715 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69481 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 96 | no |
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 93.002 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 83.12 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 90.681 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 79.346 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 95.472 | no |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 92.5 | no |
External links
@ref: 67770
culture collection no.: JCM 1553, ATCC 11443, BCRC 12321
straininfo link
- @ref: 113466
- straininfo: 35362
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Metabolism | 10772153 | Citrate utilization by homo- and heterofermentative lactobacilli. | Medina de Figueroa R, Alvarez F, Pesce de Ruiz Holgado A, Oliver G, Sesma F | Microbiol Res | 10.1016/S0944-5013(00)80005-1 | 2000 | Acetoin/metabolism, *Bacterial Proteins, Biological Transport, Carrier Proteins/genetics/metabolism, Citrates/*metabolism, Culture Media, Diacetyl/metabolism, Fermentation, Genes, Bacterial, Glucose/metabolism, Lactobacillus/genetics/growth & development/*metabolism, Symporters | Cultivation |
| Genetics | 17320995 | Genome-shuffling improved acid tolerance and L-lactic acid volumetric productivity in Lactobacillus rhamnosus. | Wang Y, Li Y, Pei X, Yu L, Feng Y | J Biotechnol | 10.1016/j.jbiotec.2007.01.011 | 2007 | *Bioreactors, Biotechnology/*methods, Cell Count, Genome, Bacterial/*drug effects/*radiation effects, Glucose/analysis, Lactic Acid/*biosynthesis, Lactobacillus rhamnosus/*genetics/*metabolism, Mutagenesis, Nitrosoguanidines/toxicity, Ultraviolet Rays | Biotechnology |
| Genetics | 18289712 | Genome shuffling enhanced L-lactic acid production by improving glucose tolerance of Lactobacillus rhamnosus. | Yu L, Pei X, Lei T, Wang Y, Feng Y | J Biotechnol | 10.1016/j.jbiotec.2008.01.008 | 2008 | Bioreactors, DNA Shuffling, Genome, Bacterial/drug effects/*genetics/radiation effects, Glucose/*metabolism, Lactic Acid/*biosynthesis, Lactobacillus rhamnosus/*genetics/metabolism, Mutagenesis, Nitrosoguanidines/pharmacology, Ultraviolet Rays | Metabolism |
| Enzymology | 24426140 | Molecular Cloning, Expression of minD Gene from Lactobacillus acidophilus VTCC-B-871 and Analyses to Identify Lactobacillus rhamnosus PN04 from Vietnam Hottuynia cordata Thunb. | Nguyen TH, Doan VT, Ha LD, Nguyen HN | Indian J Microbiol | 10.1007/s12088-013-0384-1 | 2013 | ||
| Genetics | 29159508 | Comparative genomics and transcriptome analysis of Lactobacillus rhamnosus ATCC 11443 and the mutant strain SCT-10-10-60 with enhanced L-lactic acid production capacity. | Sun L, Lu Z, Li J, Sun F, Huang R | Mol Genet Genomics | 10.1007/s00438-017-1379-0 | 2017 | Gene Expression Regulation, Bacterial, Genome, Bacterial, *Genomics, Lactic Acid/*biosynthesis, Lactobacillus rhamnosus/*genetics/metabolism, Metabolic Engineering, Mutation, Pyruvic Acid/metabolism, Transcriptome/*genetics | Transcriptome |
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |
| 113466 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID35362.1 |
| 124043 | Dr. Isabel Schober, Dr. Julia Koblitz | Data extracted from sequence databases, automatically matched based on designation and taxonomy |