Lactobacillus gasseri JCM 11657 is a bacterium of the family Lactobacillaceae.
genome sequence 16S sequence Bacteria| @ref 20215 |
|
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| Domain Bacteria |
| Phylum Bacillota |
| Class Bacilli |
| Order Lactobacillales |
| Family Lactobacillaceae |
| Genus Lactobacillus |
| Species Lactobacillus gasseri |
| Full scientific name Lactobacillus gasseri Lauer and Kandler 1980 |
| @ref | Growth | Type | Temperature (°C) | |
|---|---|---|---|---|
| 67770 | positive | growth | 37 |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|
| 66792 | Lactobacillus paragasseri strain JCM 11657 | contig | 2107999 | 72.81 | |||
| 66792 | Lactobacillus paragasseri strain JCM 11657 | contig | 2107999 | 72.81 | |||
| 66792 | Lactobacillus paragasseri strain JCM 11657 | contig | 2107999 | 72.81 | |||
| 66792 | ASM1997219v1 assembly for Lactobacillus paragasseri JCM 11657 | contig | 2107999 | 72.66 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 124043 | Lactobacillus gasseri gene for 16S rRNA, partial sequence, strain: JCM 11657. | AB289144 | 652 | 1596 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | facultative anaerobe | 94.91 | no |
| 125439 | motility | BacteriaNetⓘ | no | 77.19 | no |
| 125439 | gram_stain | BacteriaNetⓘ | positive | 76.44 | no |
| 125439 | spore_formation | BacteriaNetⓘ | no | 90.16 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 95.74 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 72.43 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 94.18 | no |
| 125438 | aerobic | aerobicⓘ | no | 96.88 | no |
| 125438 | thermophilic | thermophileⓘ | no | 96.00 | no |
| 125438 | flagellated | motile2+ⓘ | no | 92.00 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Metabolism | Homologous Expression and Characterization of Gassericin T and Gassericin S, a Novel Class IIb Bacteriocin Produced by Lactobacillus gasseri LA327. | Kasuga G, Tanaka M, Harada Y, Nagashima H, Yamato T, Wakimoto A, Arakawa K, Kawai Y, Kok J, Masuda T. | Appl Environ Microbiol | 10.1128/aem.02815-18 | 2019 | |
| Lactobacillus gasseri LA39 Activates the Oxidative Phosphorylation Pathway in Porcine Intestinal Epithelial Cells. | Hu J, Ma L, Zheng W, Nie Y, Yan X. | Front Microbiol | 10.3389/fmicb.2018.03025 | 2018 | ||
| Conjugative plasmid from Lactobacillus gasseri LA39 that carries genes for production of and immunity to the circular bacteriocin gassericin A. | Ito Y, Kawai Y, Arakawa K, Honme Y, Sasaki T, Saito T. | Appl Environ Microbiol | 10.1128/aem.00195-09 | 2009 | ||
| Metabolism | Oligosaccharide Metabolism and Lipoteichoic Acid Production in Lactobacillus gasseri and Lactobacillus paragasseri. | Shiraishi T, Maeno S, Kishi S, Fujii T, Tanno H, Hirano K, Tochio T, Tanizawa Y, Arita M, Yokota SI, Endo A | Microorganisms | 10.3390/microorganisms9081590 | 2021 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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