Strain identifier
BacDive ID: 161177
Type strain: 
Species: Lactobacillus gasseri
Strain history: T. Saito LA39.
NCBI tax ID(s): 1596 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 161177
keywords: genome sequence, Bacteria, mesophilic
description: Lactobacillus gasseri JCM 11657 is a mesophilic bacterium of the family Lactobacillaceae.
NCBI tax id
- NCBI tax id: 1596
- Matching level: species
strain history
- @ref: 67770
- history: T. Saito LA39.
doi: 10.13145/bacdive161177.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Lactobacillaceae
- genus: Lactobacillus
- species: Lactobacillus gasseri
- full scientific name: Lactobacillus gasseri Lauer and Kandler 1980
@ref: 67770
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Lactobacillaceae
genus: Lactobacillus
species: Lactobacillus gasseri
full scientific name: Lactobacillus gasseri Lauer and Kandler 1980
type strain: no
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Lactobacillus paragasseri JCM 11657 | GCA_019972195 | contig | ncbi | 2107999 |
| 66792 | Lactobacillus paragasseri strain JCM 11657 | 2107999.51 | wgs | patric | 2107999 |
| 66792 | Lactobacillus paragasseri strain JCM 11657 | 2107999.55 | wgs | patric | 2107999 |
| 66792 | Lactobacillus paragasseri strain JCM 11657 | 2107999.53 | wgs | patric | 2107999 |
| 66792 | Lactobacillus paragasseri strain JCM 11657 | 2107999.54 | wgs | patric | 2107999 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 95.767 | no |
| gram-positive | yes | 96.5 | no |
| anaerobic | no | 61.27 | no |
| aerobic | no | 97.289 | no |
| halophile | yes | 85.889 | no |
| spore-forming | no | 95.286 | no |
| glucose-util | yes | 94.003 | no |
| flagellated | no | 97.94 | no |
| thermophile | no | 99.455 | no |
| glucose-ferment | yes | 89.599 | no |
External links
@ref: 67770
culture collection no.: JCM 11657
straininfo link
- @ref: 113251
- straininfo: 111754
literature
- topic: Metabolism
- Pubmed-ID: 34442669
- title: Oligosaccharide Metabolism and Lipoteichoic Acid Production in Lactobacillus gasseri and Lactobacillus paragasseri.
- authors: Shiraishi T, Maeno S, Kishi S, Fujii T, Tanno H, Hirano K, Tochio T, Tanizawa Y, Arita M, Yokota SI, Endo A
- journal: Microorganisms
- DOI: 10.3390/microorganisms9081590
- year: 2021
- topic2: Biotechnology
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 113251 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID111754.1 |