Name: Actinomadura deserti CGMCC 4.7432
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 159889

Type strain:

Species: Actinomadura deserti

Culture col. no.: CGMCC 4.7432, KCTC 39998, BMP B8004, JCM 33401

Strain history: CGMCC 4.7432 <-- J. Jiang; Jiangsu Normal Univ., China; BMP B8004.

NCBI tax ID(s): 2038117 (species)

Special Collections

Section

When using BacDive for research please cite our paper

Actinomadura deserti CGMCC 4.7432 is an aerobe, mesophilic, Gram-positive bacterium that builds a substrate mycelium and was isolated from From soil.

Gram-positive
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Streptosporangiales*
	Family	*Thermomonosporaceae*
	Genus	*Actinomadura*
	Species	**Actinomadura deserti**
	Full Scientific Name (LPSN)	Actinomadura deserti Cao et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #66653]	Gram stain	positive

[Ref.: #66653]	Multicellular complex forming ability	yes
[Ref.: #66653]	Multicellular complex name	substrate mycelium
[Ref.: #66653]	Multicellular complex color	deep yellowish-brown
[Ref.: #66653]	Multicellular complex further description	with mature aerial mycelium that develops into rod-shaped spore chains

Information on culture and growth conditions Culture and growth conditions

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Culture medium

Czapek's agar

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Culture medium growth

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Culture medium

ISP 2

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Culture medium growth

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Culture medium

ISP 3

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Culture medium growth

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Culture medium

ISP 4

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Culture medium growth

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Culture medium

ISP 5

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Culture medium growth

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Culture medium

Nutrient agar (NA)

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Culture medium growth

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Culture medium

PDA

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Culture medium growth

		Temperature
[Ref.: #66653]	optimum	28 °C
[Ref.: #66653]	growth	20-37 °C
[Ref.: #67770]	growth	28 °C
[Ref.: #67771]	growth	28 °C

	pH	Kind of pH		pH
[Ref.: #66653]			optimum	7
[Ref.: #66653]			growth	6-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #66653]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

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Halophily / tolerance level

non-halophilic

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #66653]		NaCl		growth	0-4	%(w/v)
[Ref.: #66653]		NaCl		optimum	0	%(w/v)

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Observation

quinones: MK-9(H₆), MK-9(H₈)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #66653]	casein	+	hydrolysis
[Ref.: #66653]	D-fructose ChEBI	+	carbon source
[Ref.: #66653]	D-mannose ChEBI	+	carbon source
[Ref.: #66653]	D-rhamnose ChEBI	-	carbon source
[Ref.: #66653]	D-ribose ChEBI	+	carbon source
[Ref.: #66653]	D-xylose ChEBI	+	carbon source
[Ref.: #66653]	gelatin ChEBI	+	hydrolysis
[Ref.: #66653]	L-arabinose ChEBI	+	carbon source
[Ref.: #66653]	L-arginine ChEBI	-	nitrogen source
[Ref.: #66653]	L-asparagine ChEBI	+	nitrogen source
[Ref.: #66653]	L-histidine ChEBI	+	nitrogen source
[Ref.: #66653]	L-lysine ChEBI	+	nitrogen source
[Ref.: #66653]	L-methionine ChEBI	+	nitrogen source
[Ref.: #66653]	L-serine ChEBI	+	nitrogen source
[Ref.: #66653]	L-sorbose ChEBI	+	carbon source
[Ref.: #66653]	L-tyrosine ChEBI	-	nitrogen source
[Ref.: #66653]	milk	+	hydrolysis
[Ref.: #66653]	raffinose ChEBI	-	carbon source
[Ref.: #66653]	starch ChEBI	+	hydrolysis
[Ref.: #66653]	tween 80 ChEBI	+	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #66653]		hydrogen sulfide ChEBI	no
[Ref.: #66653]		nitrate ChEBI	no

Fatty acid profile

Metadata FA analysis

Reference

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Fatty acid	Percentage
C16:0 iso	26.9
C16:0	16.3
C18:0 10-methyl	13.8
C18:1 w9c	10.8
C16:1 w7c / C16:1 w6c	8
C18:0 iso	6.6
C17:0 10-methyl	6
C16:1 iso G	1.9
C17:1 w8c	1.2
C14:0	0.9
C14:0 iso	0.9
C17:0	0.7
C14:1 w5c	0.6
C12:0 iso	0.6
C13:0 iso 3OH	0.5
C19:0 10-methyl	0.3
C13:0 anteiso	0.2
C15:0 anteiso	0.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67771]	Sample type/isolated from	From soil
[Ref.: #67771]	Geographic location (country and/or sea, region)	Xinjiang
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia

[Ref.: #66653]	Sample type/isolated from	desert road soil
[Ref.: #66653]	Geographic location (country and/or sea, region)	Xinjiang Province
[Ref.: #66653]	Country	China
[Ref.: #66653]	Country ISO 3 Code	CHN
[Ref.: #66653]	Continent	Asia
[Ref.: #66653]	Geographic location	39.8333°/80.9667°
[Ref.: #66653]	Enrichment culture	humic acid vitamin agar
[Ref.: #66653]	Enrichment culture composition	supplemented with nalidixic acid (10mg/l), cycloheximide (20mg/l) and nystatin (20mg/l)
[Ref.: #66653]	Enrichment culture duration	21 days
[Ref.: #66653]	Enrichment culture temperature	28 ̊C
[Ref.: #66653]	Isolation/enrichment procedure	standard dilution plating method

[Ref.: #67770]	Sample type/isolated from	Desert soil from Xinjiang Province
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Climate	#Hot	#Arid
#Environmental	#Terrestrial	#Soil
#Engineered	#Built environment	#Transportation ways (Roads)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66653]	Actinomadura deserti 16S ribosomal RNA gene, partial sequence	MF972517	1513	GenBank ENA	2038117 tax ID

[Ref.: #66653]	GC-content	71.90 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	71.9 mol%	thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

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Culture collection no.

CGMCC 4.7432, KCTC 39998, BMP B8004, JCM 33401

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actinomadura deserti sp. nov., isolated from desert soil.	Cao C, Xu T, Liu J, Cai X, Sun Y, Qin S, Jiang J, Huang Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.002922	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66653

Chengliang Cao, Tangyu Xu, Jinjuan Liu, Xiaorui Cai, Yong Sun, Sheng Qin, Jihong Jiang and Ying Huang: Actinomadura deserti sp. nov., isolated from desert soil. IJSEM 68: 2930 - 2935 2018 ( DOI 10.1099/ijsem.0.002922 , PubMed 30091696 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
* These data were automatically processed and therefore are not curated

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