Actinomadura deserti (CGMCC 4.7432, KCTC 39998, BMP B8004)

Name: Actinomadura deserti (CGMCC 4.7432, KCTC 39998, BMP B8004)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 159889

Type strain

Culture col. no. CGMCC 4.7432 KCTC 39998 BMP B8004 JCM 33401

NCBI tax ID(s) 2038117

Special Collections JCM KCTC Literature strains

History KCTC <- Chengliang Cao, Jiangsu Normal Univ. JCM <-- CGMCC 4.7432 <-- J. Jiang; Jiangsu Normal Univ., China; BMP B8004.

Links

Actinomadura deserti CGMCC 4.7432 is an aerobe, Gram-positive bacterium that builds a substrate mycelium and was isolated from From soil.

Gram-positive aerobe 16S sequence Bacteria

Name and taxonomic classification

SI-ID 26832

KCTC 39998

@ref 20215

Last LPSN update 2026-05-29 08:44:18

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Streptosporangiales

Family Thermomonosporaceae

Genus Actinomadura

Species Actinomadura deserti

Full scientific name Actinomadura deserti Cao et al. 2018

Morphology

Cell morphology

66653

Gram stainpositive

Multicellular morphology

@ref	Forms multicellular complex	Complex name	Complex color	Further description
66653		substrate mycelium	deep yellowish-brown	with mature aerial mycelium that develops into rod-shaped spore chains

Culture and growth conditions

Culture medium

@ref	Name	Growth
66653	Czapek's agar
66653	ISP 2
66653	ISP 3
66653	ISP 4
66653	ISP 5
66653	Nutrient agar (NA)
66653	PDA

Culture temp

@ref	Growth	Type	Temperature (°C)
66653	positive	optimum	28
66653	positive	growth	20-37
67770	positive	growth	28
67771	positive	growth	28

Culture pH

@ref	Ability	Type	PH	PH range
66653	positive	optimum	7
66653	positive	growth	6-10	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
66653	aerobe
67771	aerobe

Halophily

@ref	Halophily level	Salt	Growth	Tested relation	Concentration
66653		NaCl	positive	growth	0-4 %(w/v)
66653	non-halophilic	NaCl	positive	optimum	0 %(w/v)

Observation

67770

Observationquinones: MK-9(H₆), MK-9(H₈)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
66653		casein	+	hydrolysis
66653	15824 ChEBI	D-fructose	+	carbon source
66653	16024 ChEBI	D-mannose	+	carbon source
66653	63150 ChEBI	D-rhamnose	-	carbon source
66653	16988 ChEBI	D-ribose	+	carbon source
66653	65327 ChEBI	D-xylose	+	carbon source
66653	5291 ChEBI	gelatin	+	hydrolysis
66653	30849 ChEBI	L-arabinose	+	carbon source
66653	16467 ChEBI	L-arginine	-	nitrogen source
66653	17196 ChEBI	L-asparagine	+	nitrogen source
66653	15971 ChEBI	L-histidine	+	nitrogen source
66653	18019 ChEBI	L-lysine	+	nitrogen source
66653	16643 ChEBI	L-methionine	+	nitrogen source
66653	17115 ChEBI	L-serine	+	nitrogen source
66653	17266 ChEBI	L-sorbose	+	carbon source
66653	17895 ChEBI	L-tyrosine	-	nitrogen source
66653		milk	+	hydrolysis
66653	16634 ChEBI	raffinose	-	carbon source
66653	28017 ChEBI	starch	+	hydrolysis
66653	53426 ChEBI	tween 80	+	hydrolysis

Metabolite production

@ref	Chebi-ID	Metabolite	Production
66653	16136 ChEBI	hydrogen sulfide
66653	17632 ChEBI	nitrate

Fatty acid profile

Metadata FA analysis

@ref

66653

Fatty acid	Percentage
C16:0 iso	26.9
C16:0	16.3
C18:0 10-methyl	13.8
C18:1 w9c	10.8
C16:1 w7c / C16:1 w6c	8
C18:0 iso	6.6
C17:0 10-methyl	6
C16:1 iso G	1.9
C17:1 w8c	1.2
C14:0	0.9
C14:0 iso	0.9
C17:0	0.7
C14:1 w5c	0.6
C12:0 iso	0.6
C13:0 iso 3OH	0.5
C19:0 10-methyl	0.3
C13:0 anteiso	0.2
C15:0 anteiso	0.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Climate	#Hot	#Arid
#Environmental	#Terrestrial	#Soil
#Engineered	#Built environment	#Transportation ways (Roads)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture	Enrichment culture composition	Enrichment culture duration	Enrichment culture temperature	Isolation procedure
67771	From soil	Xinjiang	China	CHN	Asia
66653	desert road soil	Xinjiang Province	China	CHN	Asia	39.8333	80.9667 39.8333/80.9667	humic acid vitamin agar	supplemented with nalidixic acid (10mg/l), cycloheximide (20mg/l) and nystatin (20mg/l)	21 days	28	standard dilution plating method
67770	Desert soil from Xinjiang Province		China	CHN	Asia

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
66653	Actinomadura deserti 16S ribosomal RNA gene, partial sequence	MF972517	1513		2038117

GC content

@ref	GC-content (mol%)	Method
66653	71.90	thermal denaturation, midpoint method (Tm)
67770	71.9	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actinomadura deserti sp. nov., isolated from desert soil.	Cao C, Xu T, Liu J, Cai X, Sun Y, Qin S, Jiang J, Huang Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.002922	2018

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66653	Chengliang Cao, Tangyu Xu, Jinjuan Liu, Xiaorui Cai, Yong Sun, Sheng Qin, Jihong Jiang and Ying Huang: Actinomadura deserti sp. nov., isolated from desert soil. IJSEM 68: 2930 - 2935 2018 ( DOI 10.1099/ijsem.0.002922 , PubMed 30091696 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Actinomadura deserti (CGMCC 4.7432, KCTC 39998, BMP B8004)

Name and taxonomic classification

Morphology

Cell morphology

Multicellular morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Halophily

Observation

Metabolite utilization

Metabolite production

Fatty acid profile

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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