Name: Rhizobium wuzhouense W44
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 159888

Type strain:

Species: Rhizobium wuzhouense

Strain Designation: W44

Culture col. no.: CCTCC AB 2017179, GDMCC 1.1257, KCTC 62194

NCBI tax ID(s): 1986026 (species)

Special Collections

Section

Rhizobium wuzhouense W44 is an aerobe, chemoheterotroph, Gram-negative bacterium that forms circular colonies and was isolated from sterilized root-tissue of wild rice, Oryza officinalis.

colony-forming
Gram-negative
motile
rod-shaped
aerobe
chemoheterotroph
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Rhizobiaceae*
	Genus	*Rhizobium*
	Species	**Rhizobium wuzhouense**
	Full Scientific Name (LPSN)	Rhizobium wuzhouense Yuan et al. 2018

Synonym

"Peteryoungia wuzhouensis"

Information on morphological and physiological properties Morphology

[Ref.: #66652]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %98

[Ref.: #66652]	Cell length	0.8-1.5 µm

[Ref.: #66652]	Cell width	0.2-0.3 µm

[Ref.: #66652]	Cell shape	rod-shaped

[Ref.: #66652]	Motility	yes

[Ref.: #66652]	Colony size	0.5-1.5 mm
[Ref.: #66652]	Colony color	cream
[Ref.: #66652]	Colony shape	circular
[Ref.: #66652]	Incubation period	2 days
[Ref.: #66652]	Cultivation medium used	LB agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #66652]

Culture medium

LB (Luria-Bertani) agar

[Ref.: #66652]

Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #66652]			optimum	30 °C
[Ref.: #66652]			growth	15-40 °C

	pH	Kind of pH		pH
[Ref.: #66652]			optimum	7
[Ref.: #66652]			growth	5-8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #66652]

Oxygen tolerance

aerobe

[Ref.: #66652]

Nutrition type

chemoheterotroph

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #66652]		NaCl		growth	0-2	%(w/v)
[Ref.: #66652]		NaCl		optimum	0.5	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #66652]	amygdalin ChEBI	+	carbon source
[Ref.: #66652]	arbutin ChEBI	+	carbon source
[Ref.: #66652]	casein	-	hydrolysis
[Ref.: #66652]	cellobiose ChEBI	+	carbon source
[Ref.: #66652]	citric acid ChEBI	+	reduction
[Ref.: #66652]	D-arabinose ChEBI	+	carbon source
[Ref.: #66652]	D-arabitol ChEBI	+	carbon source
[Ref.: #66652]	D-fructose ChEBI	+	carbon source
[Ref.: #66652]	D-fucose ChEBI	+	carbon source
[Ref.: #66652]	D-galactose ChEBI	+	carbon source
[Ref.: #66652]	D-glucose ChEBI	+	carbon source
[Ref.: #66652]	D-lyxose ChEBI	+	carbon source
[Ref.: #66652]	D-mannitol ChEBI	+	carbon source
[Ref.: #66652]	D-mannose ChEBI	+	carbon source
[Ref.: #66652]	D-ribose ChEBI	+	carbon source
[Ref.: #66652]	D-tagatose ChEBI	+	carbon source
[Ref.: #66652]	D-xylose ChEBI	+	carbon source
[Ref.: #66652]	esculin ChEBI	+	carbon source
[Ref.: #66652]	gelatin ChEBI	-	hydrolysis
[Ref.: #66652]	gentiobiose ChEBI	+	carbon source
[Ref.: #66652]	glycerol ChEBI	+	carbon source
[Ref.: #66652]	L-arabinose ChEBI	+	carbon source
[Ref.: #66652]	L-fucose ChEBI	+	carbon source
[Ref.: #66652]	L-rhamnose ChEBI	+	carbon source
[Ref.: #66652]	lactose ChEBI	+	carbon source
[Ref.: #66652]	maltose ChEBI	+	carbon source
[Ref.: #66652]	melezitose ChEBI	+	carbon source
[Ref.: #66652]	melibiose ChEBI	+	carbon source
[Ref.: #66652]	methyl alpha-D-glucopyranoside ChEBI	+	carbon source
[Ref.: #66652]	myo-inositol ChEBI	+	carbon source
[Ref.: #66652]	nitrate ChEBI	+	reduction
[Ref.: #66652]	raffinose ChEBI	+	carbon source
[Ref.: #66652]	ribitol ChEBI	+	carbon source
[Ref.: #66652]	salicin ChEBI	+	carbon source
[Ref.: #66652]	sorbitol ChEBI	+	carbon source
[Ref.: #66652]	sucrose ChEBI	+	carbon source
[Ref.: #66652]	trehalose ChEBI	+	carbon source
[Ref.: #66652]	turanose ChEBI	+	carbon source
[Ref.: #66652]	tween 80 ChEBI	-	hydrolysis
[Ref.: #66652]	xylitol ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #66652]	ampicillin ChEBI				yes	20	µg (disc)
[Ref.: #66652]	chloramphenicol ChEBI	yes	30	µg (disc)
[Ref.: #66652]	erythromycin ChEBI				yes	20	µg (disc)
[Ref.: #66652]	gentamicin ChEBI	yes	10	µg (disc)
[Ref.: #66652]	kanamycin ChEBI	yes	30	µg (disc)
[Ref.: #66652]	penicillin ChEBI				yes	10	Unit (disc)
[Ref.: #66652]	rifampicin ChEBI	yes	5	µg (disc)
[Ref.: #66652]	streptomycin ChEBI	yes	10	µg (disc)
[Ref.: #66652]	tetracycline ChEBI	yes	30	µg (disc)

	Metabolite	Production
[Ref.: #66652]	acetoin ChEBI	yes
[Ref.: #66652]	hydrogen sulfide ChEBI	no
[Ref.: #66652]	indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #66652]		acetoin ChEBI	+

	Enzyme	Enzyme activity	EC number
[Ref.: #66652]	arginine dihydrolase	-	3.5.3.6
[Ref.: #66652]	beta-galactosidase	+	3.2.1.23
[Ref.: #66652]	catalase	+	1.11.1.6
[Ref.: #66652]	cellulase	+	3.2.1.4
[Ref.: #66652]	cytochrome oxidase	+	1.9.3.1
[Ref.: #66652]	lysine decarboxylase	-	4.1.1.18
[Ref.: #66652]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #66652]	tryptophan deaminase	-	4.1.99.1
[Ref.: #66652]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66652]	Sample type/isolated from	sterilized root-tissue of wild rice, Oryza officinalis
[Ref.: #66652]	Host species	Oryza officinalis
[Ref.: #66652]	Geographic location (country and/or sea, region)	Wild Rice National Conservation Area, Cenxi County, Wuzhou, Guangxi Zhuang Autonomous Region
[Ref.: #66652]	Country	China
[Ref.: #66652]	Country ISO 3 Code	CHN
[Ref.: #66652]	Continent	Asia
[Ref.: #66652]	Geographic location	22.5800°/110.5100°
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)
#Host Body-Site	#Plant	#Sterilized plant part

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66652]	Rhizobium wuzhouense strain W44 16S ribosomal RNA gene, partial sequence	MG857114	1352	GenBank ENA	1986026 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Rhizobium wuzhouense W44	GCA_003205195	contig	GenBank ENA	1986026 tax ID	*

[Ref.: #66652]

GC-content

62.40 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Rhizobium wuzhouense W44 NCBI: GCA_003205195.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	98	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	93.505	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	84.129	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	87.713	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	99.994	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	73.087	no

Availability in culture collections External links

[Ref.: #66652]

Culture collection no.

CCTCC AB 2017179, GDMCC 1.1257, KCTC 62194

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Rhizobium wuzhouense sp. nov., isolated from roots of Oryza officinalis.	Yuan T, Liu L, Huang S, Taher AH, Tan Z, Wu G, Peng G	Int J Syst Evol Microbiol	10.1099/ijsem.0.002921	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66652

Tao Yuan, Lihui Liu, Shufen Huang, Ali Hussein Taher, Zhiyuan Tan, Guojie Wu and Guixiang Peng: Rhizobium wuzhouense sp. nov., isolated from roots of Oryza officinalis. IJSEM 68: 2918 - 2923 2018 ( DOI 10.1099/ijsem.0.002921 , PubMed 30028288 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Rhizobium wuzhouense in external resources:
SILVA
BRENDA
PANGAEA
GBIF