Name: Companilactobacillus metriopterae NIBRBAC000499792
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 159887

Type strain:

Species: Companilactobacillus metriopterae

Strain Designation: NIBRBAC000499792

Culture col. no.: KCTC 21093, JCM 32269

Strain history: <- Moonsuk Hur, National Institute of Biological Resources

NCBI tax ID(s): 2269374 (species)

Other strains from Companilactobacillus metriopterae

C. metriopterae Hime5-1, JCM 31635, DSM 103730, ... (type strain)

Section

Companilactobacillus metriopterae NIBRBAC000499792 is a facultative anaerobe, mesophilic, Gram-positive bacterium that forms circular colonies and was isolated from soil sample.

colony-forming
Gram-positive
rod-shaped
facultative anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Lactobacillaceae*
	Genus	*Companilactobacillus*
	Species	**Companilactobacillus metriopterae**
	Full Scientific Name (LPSN)	Companilactobacillus metriopterae (Chiba et al. 2018) Zheng et al. 2020

	Synonym	Lactobacillus metriopterae
	Synonym	Lactobacillus terrae

Information on morphological and physiological properties Morphology

[Ref.: #66650]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive

[Ref.: #66650]	Cell length	2.5-3 µm

[Ref.: #66650]	Cell width	0.4-0.5 µm

[Ref.: #66650]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #66650]	Motility	no
[Ref.: #67771]	Motility	no

[Ref.: #66650]	Colony color	white
[Ref.: #66650]	Colony shape	circular
[Ref.: #66650]	Incubation period	2 days
[Ref.: #66650]	Cultivation medium used	MRS agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #66650]

Culture medium

MRS agar

[Ref.: #66650]

Culture medium growth

[Ref.: #66650]

Culture medium

MRS broth

[Ref.: #66650]

Culture medium growth

		Temperature
[Ref.: #66650]	optimum	30 °C
[Ref.: #66650]	growth	15-45 °C
[Ref.: #67770]	growth	25 °C
[Ref.: #67771]	growth	25 °C

[Ref.: #66650]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #66650]			growth	4.0-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #66650]	Oxygen tolerance	facultative anaerobe
[Ref.: #67771]	Oxygen tolerance	facultative anaerobe

[Ref.: #67771]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #66650]		NaCl		growth	7.5	%(w/v)
[Ref.: #66650]		NaCl	no	growth	10	%(w/v)

[Ref.: #67770]	Observation	quinones: MK-8, MK-9
[Ref.: #67771]	Observation	quinones: MK-8, MK-9

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #66650]	adipate ChEBI	-	assimilation
[Ref.: #66650]	butyrate ChEBI	-	assimilation
[Ref.: #66650]	citric acid ChEBI	-	assimilation
[Ref.: #66650]	D-fructose ChEBI	+	carbon source
[Ref.: #66650]	D-galactose ChEBI	+	carbon source
[Ref.: #66650]	D-glucose ChEBI	+	carbon source
[Ref.: #66650]	D-mannitol ChEBI	-	assimilation
[Ref.: #66650]	D-mannose ChEBI	+	assimilation
[Ref.: #66650]	D-mannose ChEBI	+	carbon source
[Ref.: #66650]	gluconate ChEBI	+	assimilation
[Ref.: #66650]	glucose ChEBI	+	fermentation
[Ref.: #66650]	L-arabinose ChEBI	-	assimilation
[Ref.: #66650]	malate ChEBI	+	assimilation
[Ref.: #66650]	maltose ChEBI	-	assimilation
[Ref.: #66650]	N-acetylglucosamine ChEBI	+	assimilation
[Ref.: #66650]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #66650]	nitrate ChEBI	-	reduction
[Ref.: #66650]	phenylacetate ChEBI	-	assimilation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #66650]	ethanol ChEBI	no
[Ref.: #66650]	indole ChEBI	no
[Ref.: #66650]	lactate ChEBI	yes

	Enzyme	Enzyme activity	EC number
[Ref.: #66650]	arginine dihydrolase	-	3.5.3.6
[Ref.: #66650]	beta-galactosidase	-	3.2.1.23
[Ref.: #66650]	beta-glucosidase	-	3.2.1.21
[Ref.: #66650]	catalase	-	1.11.1.6
[Ref.: #66650]	cytochrome oxidase	-	1.9.3.1
[Ref.: #66650]	protease	-
[Ref.: #66650]	urease	-	3.5.1.5

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #66650]

Fatty acid	Percentage
C18:1 w9c	57.3
C16:0	13.7
unknown ECL 18.846 / C19:1w6c / C19:0 cyclo	10.9
C18:1 w6c / C18:1 w7c	6.9
C18:0	3.8
C19:0 iso	2.6
C12:0	1.5
C16:1 w6c / C16:1 w7c	1.1
C14:0	0.9
C10:0	0.5
C14:1 w5c	0.4
C20:1 w9c	0.3

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66650]	Sample type/isolated from	soil sample
[Ref.: #66650]	Geographic location (country and/or sea, region)	Jukgye, Dongnam, Cheonan
[Ref.: #66650]	Country	Republic of Korea
[Ref.: #66650]	Country ISO 3 Code	KOR
[Ref.: #66650]	Continent	Asia
[Ref.: #66650]	Geographic location	36.7972°/127.3890°
[Ref.: #66650]	Enrichment culture duration	2 days
[Ref.: #66650]	Enrichment culture temperature	30 ̊C

[Ref.: #67770]	Sample type/isolated from	Soil sample collected in Cheonan
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From forest soil(Dongnam-gu forest)
[Ref.: #67771]	Geographic location (country and/or sea, region)	Cheonan Metropolitan City, Chungnam-do, altitude 186m)
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
[Ref.: #67771]	Geographic location	36.7972°/127.3890°
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence MF683040 (>99% sequence identity) for Companilactobacillus from Microbeatlas

Aquatic Samples	1
Soil Samples	24
Animal Samples	105
Plant Samples	7
Total Samples	137

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66650]	Lactobacillus sp. strain NIBRBAC000499792 16S ribosomal RNA gene, partial sequence	MF683040	1545	ENA	2269374 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67771]	Lactobacillus terrae NIBRBAC000499792	GCA_002762335	complete	GenBank	2269374 tax ID
[Ref.: #66792]	Lactobacillales bacterium strain NIBRBAC000499792	1993866.3	complete	PATRIC	1993866 tax ID	*

[Ref.: #66650]	GC-content	33.10 mol%	genome sequence analysis
[Ref.: #67771]	GC-content	33.1 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lactobacillales bacterium strain NIBRBAC000499792 PATRIC: 1993866.3
[Ref.: #69480]	motile	no	95.994	yes
[Ref.: #69480]	gram-positive	yes	96.986	yes
[Ref.: #69480]	anaerobic	no	94.388	yes
[Ref.: #69480]	aerobic	no	92.889	yes
[Ref.: #69480]	halophile	yes	88.007	no
[Ref.: #69480]	spore-forming	no	97.172	no
[Ref.: #69480]	glucose-util	yes	92.242	yes
[Ref.: #69480]	flagellated	no	98.985	yes
[Ref.: #69480]	thermophile	no	99.367	yes
[Ref.: #69480]	glucose-ferment	yes	87.542	yes

Availability in culture collections External links

[Ref.: #66650]

Culture collection no.

KCTC 21093, JCM 32269

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lactobacillus terrae sp. nov., a novel species isolated from soil samples in the Republic of Korea.	Kim HJ, Lee HJ, Lim B, Kim E, Kim HY, Suh M, Hur M	Int J Syst Evol Microbiol	10.1099/ijsem.0.002918	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66650

Hyun-Joong Kim, Hye Jin Lee, Bora Lim, Eiseul Kim, Hae-Yeong Kim, Minhwan Suh and Moonsuk Hur: Lactobacillus terrae sp. nov., a novel species isolated from soil samples in the Republic of Korea. IJSEM 68: 2906 - 2911 2018 ( DOI 10.1099/ijsem.0.002918 , PubMed 30010525 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Lactobacillales bacterium strain NIBRBAC000499792

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