Companilactobacillus metriopterae (KCTC 21093, JCM 32269, NIBRBAC000499792)

Name: Companilactobacillus metriopterae (KCTC 21093, JCM 32269, NIBRBAC000499792)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 159887

Type strain

Strain Designation NIBRBAC000499792

Culture col. no. KCTC 21093 JCM 32269 NIBRBAC000499792

NCBI tax ID(s) 2269374

Special Collections JCM KCTC Literature strains

History JCM <-- M. Hur; Natl. Inst. of Biol. Resour., South Korea; NIBRBAC000499792. KCTC <- Moonsuk Hur, National Institute of Biological Resources

Links

Companilactobacillus metriopterae NIBRBAC000499792 is a facultative anaerobe, Gram-positive, rod-shaped bacterium that forms circular colonies and was isolated from soil sample.

Gram-positive rod-shaped colony-forming facultative anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 25563

KCTC 21093,JCM 32269

@ref 20215

Last LPSN update 2026-05-29 08:44:18

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Lactobacillaceae

Genus Companilactobacillus

Species Companilactobacillus metriopterae

Full scientific name Companilactobacillus metriopterae (Chiba et al. 2018) Zheng et al. 2020

Synonyms (2)

Lactobacillus terrae
Lactobacillus metriopterae

BacDive ID	Other strains from **Companilactobacillus metriopterae** (1)	Type strain
158793	C. metriopterae Hime5-1, JCM 31635, DSM 103730, Hime 5-1 (type strain)

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
66650	positive	2.5-3 µm	0.4-0.5 µm	rod-shaped
67771				rod-shaped
67771	positive
125438	positive				92.739

Colony morphology

@ref	Colony color	Colony shape	Incubation period	Medium used
66650	white	circular	2 days	MRS agar

Culture and growth conditions

Culture medium

@ref	Name	Growth
66650	MRS agar
66650	MRS broth

Culture temp

@ref	Growth	Type	Temperature (°C)
66650	positive	optimum	30
66650	positive	growth	15-45
67770	positive	growth	25
67771	positive	growth	25

Culture pH

@ref	Ability	Type	PH	PH range
66650	positive	growth	4.0-8.0	acidophile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
66650	facultative anaerobe
67771	facultative anaerobe
125439	facultative anaerobe	91.554

Spore formation

@ref	Spore formation	Confidence
67771
125439		95.099

Halophily

@ref	Salt	Growth	Tested relation	Concentration
66650	NaCl	positive	growth	7.5 %(w/v)
66650	NaCl		growth	10 %(w/v)

Observation

@ref	Observation
67770	quinones: MK-8, MK-9
67771	quinones: MK-8, MK-9

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
66650	17128 ChEBI	adipate	-	assimilation
66650	17968 ChEBI	butyrate	-	assimilation
66650	53258 ChEBI	citric acid	-	assimilation
66650	15824 ChEBI	D-fructose	+	carbon source
66650	12936 ChEBI	D-galactose	+	carbon source
66650	17634 ChEBI	D-glucose	+	carbon source
66650	16899 ChEBI	D-mannitol	-	assimilation
66650	16024 ChEBI	D-mannose	+	assimilation
66650	16024 ChEBI	D-mannose	+	carbon source
66650	24265 ChEBI	gluconate	+	assimilation
66650	17234 ChEBI	glucose	+	fermentation
66650	30849 ChEBI	L-arabinose	-	assimilation
66650	25115 ChEBI	malate	+	assimilation
66650	17306 ChEBI	maltose	-	assimilation
66650	59640 ChEBI	N-acetylglucosamine	+	assimilation
66650	59640 ChEBI	N-acetylglucosamine	+	carbon source
66650	17632 ChEBI	nitrate	-	reduction
66650	18401 ChEBI	phenylacetate	-	assimilation

Metabolite production

@ref	Chebi-ID	Metabolite
66650	16236 ChEBI	ethanol
66650	35581 ChEBI	indole
66650	24996 ChEBI	lactate

Enzymes

@ref	Value	Activity	Ec
66650	arginine dihydrolase	-	3.5.3.6
66650	beta-galactosidase	-	3.2.1.23
66650	beta-glucosidase	-	3.2.1.21
66650	catalase	-	1.11.1.6
66650	cytochrome oxidase	-	1.9.3.1
66650	protease	-
66650	urease	-	3.5.1.5

Fatty acid profile

Metadata FA analysis

@ref

66650

Fatty acid	Percentage
C18:1 w9c	57.3
C16:0	13.7
unknown ECL 18.846 / C19:1w6c / C19:0 cyclo	10.9
C18:1 w6c / C18:1 w7c	6.9
C18:0	3.8
C19:0 iso	2.6
C12:0	1.5
C16:1 w6c / C16:1 w7c	1.1
C14:0	0.9
C10:0	0.5
C14:1 w5c	0.4
C20:1 w9c	0.3

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture duration	Enrichment culture temperature
66650	soil sample	Jukgye, Dongnam, Cheonan	Republic of Korea	KOR	Asia	36.7972	127.389 36.7972/127.389	2 days	30
67770	Soil sample collected in Cheonan		Republic of Korea	KOR	Asia
67771	From forest soil(Dongnam-gu forest)	Cheonan Metropolitan City, Chungnam-do, altitude 186m)	Republic of Korea	KOR	Asia	36.7972	127.389 36.7972/127.389

Taxonmaps

69479

Global distribution of 16S sequence MF683040 (>99% sequence identity) for Companilactobacillus from Microbeatlas

Aquatic Samples	1
Soil Samples	24
Animal Samples	105
Plant Samples	7
Total Samples	137

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
67771	ASM276233v1 assembly for Lactobacillus terrae NIBRBAC000499792	complete	GCA_002762335	1993866.3	2269374	96.19

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
66650	Lactobacillus terrae strain NIBRBAC000499792 16S ribosomal RNA gene, partial sequence	MF683040	1545		2269374

GC content

@ref	GC-content (mol%)	Method
66650	33.10	genome sequence analysis
67771	33.1	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM276233v1 assembly for Lactobacillus terrae NIBRBAC000499792
BV-BRC: 1993866.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	gram_stain	BacteriaNetⓘ	positive	70.22	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	91.55	no
125439	motility	BacteriaNetⓘ	no	78.02	no
125439	spore_formation	BacteriaNetⓘ	no	95.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Lactobacillales bacterium strain NIBRBAC000499792
PATRIC: 1993866.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	92.74	no
125438	anaerobic	anaerobicⓘ	no	84.72	no
125438	spore-forming	spore-formingⓘ	no	86.37	yes
125438	aerobic	aerobicⓘ	no	93.87	yes
125438	thermophilic	thermophileⓘ	no	92.43	no
125438	flagellated	motile2+ⓘ	no	88.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lactobacillus terrae sp. nov., a novel species isolated from soil samples in the Republic of Korea.	Kim HJ, Lee HJ, Lim B, Kim E, Kim HY, Suh M, Hur M	Int J Syst Evol Microbiol	10.1099/ijsem.0.002918	2018

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66650	Hyun-Joong Kim, Hye Jin Lee, Bora Lim, Eiseul Kim, Hae-Yeong Kim, Minhwan Suh and Moonsuk Hur: Lactobacillus terrae sp. nov., a novel species isolated from soil samples in the Republic of Korea. IJSEM 68: 2906 - 2911 2018 ( DOI 10.1099/ijsem.0.002918 , PubMed 30010525 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Companilactobacillus metriopterae (KCTC 21093, JCM 32269, NIBRBAC000499792)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Enzymes

Fatty acid profile

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_002762335

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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