Name: Thalassospira marina CSC3H3
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 159890

Type strain:

Species: Thalassospira marina

Strain Designation: CSC3H3

Culture col. no.: MCCC 1A11786, KCTC 62333

Strain history: <- Renju Liu, Third institute of Oceanography, State Oceanic Administration(SOA)

NCBI tax ID(s): 2048283 (species)

Section

Thalassospira marina CSC3H3 is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from From the surface seawater.

colony-forming
curved-shaped
Gram-negative
motile
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Thalassospiraceae*
	Genus	*Thalassospira*
	Species	**Thalassospira marina**
	Full Scientific Name (LPSN)	Thalassospira marina Dong et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #66655]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.993

[Ref.: #66655]	Cell length	1.7-2.8 µm

[Ref.: #66655]	Cell width	0.5-0.8 µm

[Ref.: #66655]	Cell shape	curved-shaped

[Ref.: #66655]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %98.59

[Ref.: #66655]	Flagellum arrangement	monotrichous, polar

[Ref.: #66655]	Colony size	1-2 mm
[Ref.: #66655]	Colony color	opalescent or yellowish
[Ref.: #66655]	Colony shape	circular
[Ref.: #66655]	Incubation period	3 days
[Ref.: #66655]	Cultivation medium used	Marine agar (MA)

Information on culture and growth conditions Culture and growth conditions

[Ref.: #66655]

Culture medium

Marine agar (MA)

[Ref.: #66655]

Culture medium growth

		Temperature
[Ref.: #66655]	optimum	28 °C
[Ref.: #66655]	growth	10-40 °C
[Ref.: #67771]	growth	28 °C

[Ref.: #66655]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #66655]			optimum	7-8
[Ref.: #66655]			growth	5-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #66655]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.998
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

[Ref.: #66655]

Halophily / tolerance level

slightly halophilic

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #66655]		NaCl		growth	0-15	%(w/v)
[Ref.: #66655]		NaCl		optimum	2-3	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #66655]	4-nitrophenyl beta-D-galactopyranoside ChEBI	-	assimilation
[Ref.: #66655]	adipate ChEBI	+/-	assimilation
[Ref.: #66655]	amygdalin ChEBI	-	builds acid from
[Ref.: #66655]	arabinose ChEBI	+	builds acid from
[Ref.: #66655]	D-glucose ChEBI	+	assimilation
[Ref.: #66655]	D-glucose ChEBI	-	fermentation
[Ref.: #66655]	D-mannitol ChEBI	+	assimilation
[Ref.: #66655]	D-mannose ChEBI	+	assimilation
[Ref.: #66655]	decanoate ChEBI	-	assimilation
[Ref.: #66655]	esculin ChEBI	-	hydrolysis
[Ref.: #66655]	gelatin ChEBI	-	hydrolysis
[Ref.: #66655]	glucose ChEBI	+	builds acid from
[Ref.: #66655]	L-arabinose ChEBI	+	assimilation
[Ref.: #66655]	malate ChEBI	+	assimilation
[Ref.: #66655]	maltose ChEBI	+	assimilation
[Ref.: #66655]	mannitol ChEBI	-	builds acid from
[Ref.: #66655]	melibiose ChEBI	-	builds acid from
[Ref.: #66655]	myo-inositol ChEBI	-	builds acid from
[Ref.: #66655]	N-acetylglucosamine ChEBI	+	assimilation
[Ref.: #66655]	nitrate ChEBI	-	reduction
[Ref.: #66655]	phenylacetate ChEBI	-	assimilation
[Ref.: #66655]	potassium gluconate ChEBI	+	assimilation
[Ref.: #66655]	rhamnose ChEBI	-	builds acid from
[Ref.: #66655]	sodium citrate ChEBI	+/-	assimilation
[Ref.: #66655]	sorbitol ChEBI	-	builds acid from
[Ref.: #66655]	sucrose ChEBI	-	builds acid from
[Ref.: #66655]	tween 80 ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #66655]	acetoin ChEBI	yes
[Ref.: #66655]	hydrogen sulfide ChEBI	no
[Ref.: #66655]	indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #66655]		acetoin ChEBI	+

	Enzyme	Enzyme activity	EC number
[Ref.: #66655]	acid phosphatase	+	3.1.3.2
[Ref.: #66655]	alkaline phosphatase	+	3.1.3.1
[Ref.: #66655]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #66655]	alpha-fucosidase	-	3.2.1.51
[Ref.: #66655]	alpha-galactosidase	-	3.2.1.22
[Ref.: #66655]	alpha-mannosidase	-	3.2.1.24
[Ref.: #66655]	arginine dihydrolase	-	3.5.3.6
[Ref.: #66655]	beta-galactosidase	-	3.2.1.23
[Ref.: #66655]	beta-glucosidase	+	3.2.1.21
[Ref.: #66655]	catalase	+	1.11.1.6
[Ref.: #66655]	cystine aminopeptidase	-	3.4.11.3
[Ref.: #66655]	cytochrome oxidase	+	1.9.3.1
[Ref.: #66655]	esterase	+
[Ref.: #66655]	esterase (C 4)	+
[Ref.: #66655]	esterase Lipase (C 8)	+
[Ref.: #66655]	leucine aminopeptidase	+	3.4.1.1
[Ref.: #66655]	lipase (C 14)	-
[Ref.: #66655]	lysine decarboxylase	-	4.1.1.18
[Ref.: #66655]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #66655]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #66655]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #66655]	trypsin	-	3.4.21.4
[Ref.: #66655]	tryptophan decarboxylase	-	4.1.1.27
[Ref.: #66655]	urease	+	3.5.1.5
[Ref.: #66655]	valine aminopeptidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #66655]

Fatty acid	Percentage
C18:1 w7c	30.4
C19:0 cyclo w6c	12.9
C16:0	12
C18:1 2OH	9.1
C17:0 cyclo	5.2
C12:0	4.9
C16:0 3OH	4.3
C14:0	4.2
C14:0 3OH	3.8
C18:0	2.7
C16:1 w6/7c	2.5
C18:0 3OH	1
C13:1 at 12-13	1
C16:1 w5c	0.8
C17:0	0.7
C12:0 aldehyde	0.7

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67771]	Sample type/isolated from	From the surface seawater
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia

[Ref.: #66655]	Sample type/isolated from	surface seawater
[Ref.: #66655]	Sampling date	2016-10
[Ref.: #66655]	Geographic location (country and/or sea, region)	South China Sea
[Ref.: #66655]	Geographic location	21.3026°/117.7110°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Surface water

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66655]	Thalassospira marina strain CSC3H3 16S ribosomal RNA gene, partial sequence	MG458350	1508	ENA	2048283 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Thalassospira marina CSC3H3	GCA_002844375	complete	GenBank	2048283 tax ID	*
[Ref.: #66792]	Thalassospira marina CSC3H3	2775506933	complete	JGI IMG/M	2048283 tax ID	*

[Ref.: #66655]

GC-content

54.60 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Thalassospira marina CSC3H3 NCBI: GCA_002844375.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Thalassospira marina CSC3H3 NCBI: GCA_002844375.1
[Ref.: #69480]	flagellated	yes	88.683	yes
[Ref.: #69480]	gram-positive	no	99.085	yes
[Ref.: #69480]	anaerobic	no	96.694	yes
[Ref.: #69480]	aerobic	yes	82.671	yes
[Ref.: #69480]	halophile	no	60.518	no
[Ref.: #69480]	spore-forming	no	93.374	no
[Ref.: #69480]	glucose-util	yes	93.341	yes
[Ref.: #69480]	thermophile	no	98.873	yes
[Ref.: #69480]	motile	yes	94.324	yes
[Ref.: #69480]	glucose-ferment	no	89.106	yes

Availability in culture collections External links

[Ref.: #66655]

Culture collection no.

MCCC 1A11786, KCTC 62333

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Thalassospira marina sp. nov., isolated from surface seawater.	Dong C, Liu R, Lai Q, Liu Y, Shao Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.002925	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66655

Chunming Dong, Renju Liu, Qiliang Lai, Yang Liu and Zongze Shao: Thalassospira marina sp. nov., isolated from surface seawater. IJSEM 68: 2943 - 2948 2018 ( DOI 10.1099/ijsem.0.002925 , PubMed 30028290 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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