Corynebacterium ammoniagenes (DSM 104746, BL-383-APC-2C)

Name: Corynebacterium ammoniagenes (DSM 104746, BL-383-APC-2C)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158920

Type strain

Strain Designation BL-383-APC-2C

Culture col. no. DSM 104746 BL-383-APC-2C

NCBI tax ID(s) 1697

Special Collections DSMZ Pig DZIF

History DSMZ <- T. Clavel, TU Munich, Freising-Weihenstephan, Germany <- D. Wylensek; BL-383-APC-2C

Links

Corynebacterium ammoniagenes BL-383-APC-2C is a bacterium that was isolated from feces; pig, 5 month old, genotype: APC1311/+ referring to the adenomatous-polyposis-coli protein.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 397278

DSM 104746

@ref 20215

Last LPSN update 2026-05-29 08:44:04

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Corynebacteriaceae

Genus Corynebacterium

Species Corynebacterium ammoniagenes

Full scientific name Corynebacterium ammoniagenes (Cooke and Keith 1927) Collins 1987

Synonyms (2)

"Bacterium ammoniagenes"
Brevibacterium ammoniagenes

BacDive ID	Other strains from **Corynebacterium ammoniagenes** (11)	Type strain
3080	C. ammoniagenes 9.6, DSM 20306, AJ 1443, ATCC 6871, NCIB ... (type strain)
137624	C. ammoniagenes 747.85, CIP 101873
145138	C. ammoniagenes CCUG 27734
151118	C. ammoniagenes CCUG 43318
151119	C. ammoniagenes CCUG 43319
153003	C. ammoniagenes CCUG 48250
153004	C. ammoniagenes CCUG 48251
153006	C. ammoniagenes CCUG 48254
153579	C. ammoniagenes CCUG 50273
153666	C. ammoniagenes CCUG 50563
153699	C. ammoniagenes CCUG 50674

Morphology

Cell morphology

@ref	Motility	Confidence	Gram stain
125438		94
125438		93.512	positive

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
65742	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)		Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
65742	TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545)		Medium recipe at MediaDive	Name: TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545) Composition: Casein peptone 17.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l D(+)-Glucose 2.5 g/l K2HPO4 2.5 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
65742	positive	growth	37

Physiology and metabolism

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Host	#Mammals	#Suidae (Pig,Swine)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
65742	feces; pig, 5 month old, genotype: APC1311/+ referring to the adenomatous-polyposis-coli (APC) protein	Kranzberg (Bavaria)	Germany	DEU	Europe

Taxonmaps

69479

Global distribution of 16S sequence MN537469 (>99% sequence identity) for Corynebacterium ammoniagenes subclade from Microbeatlas

Aquatic Samples	123
Soil Samples	242
Animal Samples	2834
Plant Samples	46
Total Samples	3245

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Biosafety level	Biosafety level comment
65742	yes, in single cases	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM1284392v1 assembly for Corynebacterium ammoniagenes BL-383-APC-2C	contig	GCA_012843925	1697.8	1697	72.07

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
65742	Corynebacterium ammoniagenes strain DSM 104746 16S ribosomal RNA gene, partial sequence	MN537469	1476		1697

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Corynebacterium ammoniagenes BL-383-APC-2C
NCBI: GCA_012843925.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	93.51	no
125438	anaerobic	anaerobicⓘ	no	94.95	no
125438	aerobic	aerobicⓘ	yes	76.57	no
125438	spore-forming	spore-formingⓘ	no	75.72	no
125438	thermophilic	thermophileⓘ	no	93.50	no
125438	flagellated	motile2+ⓘ	no	94.00	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65742	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 104746
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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