Corynebacterium ammoniagenes 9.6 is an aerobe, Gram-positive, rod-shaped bacterium that produces amino acids and was isolated from stool of infant.
amino acid production Gram-positive rod-shaped aerobe genome sequence 16S sequence Bacteria| @ref 20215 |
|
|
| Domain Bacteria |
| Phylum Actinomycetota |
| Class Actinomycetes |
| Order Mycobacteriales |
| Family Corynebacteriaceae |
| Genus Corynebacterium |
| Species Corynebacterium ammoniagenes |
| Full scientific name Corynebacterium ammoniagenes (Cooke and Keith 1927) Collins 1987 |
| Synonyms (2) |
| BacDive ID | Other strains from Corynebacterium ammoniagenes (11) | Type strain |
|---|---|---|
| 137624 | C. ammoniagenes 747.85, CIP 101873 | |
| 145138 | C. ammoniagenes CCUG 27734 | |
| 151118 | C. ammoniagenes CCUG 43318 | |
| 151119 | C. ammoniagenes CCUG 43319 | |
| 153003 | C. ammoniagenes CCUG 48250 | |
| 153004 | C. ammoniagenes CCUG 48251 | |
| 153006 | C. ammoniagenes CCUG 48254 | |
| 153579 | C. ammoniagenes CCUG 50273 | |
| 153666 | C. ammoniagenes CCUG 50563 | |
| 153699 | C. ammoniagenes CCUG 50674 | |
| 158920 | C. ammoniagenes BL-383-APC-2C, DSM 104746 |
| @ref: | 8708 |
| multimedia content: | DSM_20306.jpg |
| multimedia.multimedia content: | https://www.dsmz.de/microorganisms/photos/DSM_20306.jpg |
| caption: | Medium 535 28°C |
| intellectual property rights: | © Leibniz-Institut DSMZ |
| manual_annotation: | 1 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 18438 | ISP 2 | Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes | |||
| 18438 | ISP 3 | Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms: | |||
| 8708 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | Medium recipe at MediaDive | Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water | ||
| 38092 | MEDIUM 72- for trypto casein soja agar | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |||
| 116340 | CIP Medium 72 | Medium recipe at CIP |
| @ref | Spore formation | Confidence | |
|---|---|---|---|
| 125439 | 94.844 |
| @ref | Murein short key | Type | |
|---|---|---|---|
| 8708 | A31 | A1gamma m-Dpm-direct |
| 67770 | Observationquinones: MK-9(H2) |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68371 | 27613 ChEBI | amygdalin | - | builds acid from | from API 50CH acid |
| 68368 | 27613 ChEBI | amygdalin | - | fermentation | from API 20E |
| 18438 | 22599 ChEBI | arabinose | - | ||
| 68371 | 18305 ChEBI | arbutin | - | builds acid from | from API 50CH acid |
| 68369 | 29016 ChEBI | arginine | - | hydrolysis | from API 20NE |
| 68368 | 29016 ChEBI | arginine | - | hydrolysis | from API 20E |
| 18438 | 62968 ChEBI | cellulose | - | ||
| 116340 | 16947 ChEBI | citrate | - | carbon source | |
| 68371 | 17108 ChEBI | D-arabinose | - | builds acid from | from API 50CH acid |
| 68371 | 15824 ChEBI | D-fructose | + | builds acid from | from API 50CH acid |
| 68371 | 28847 ChEBI | D-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 12936 ChEBI | D-galactose | - | builds acid from | from API 50CH acid |
| 68379 | 17634 ChEBI | D-glucose | - | fermentation | from API Coryne |
| 68371 | 17634 ChEBI | D-glucose | + | builds acid from | from API 50CH acid |
| 68369 | 17634 ChEBI | D-glucose | + | assimilation | from API 20NE |
| 68369 | 17634 ChEBI | D-glucose | - | fermentation | from API 20NE |
| 68368 | 17634 ChEBI | D-glucose | + | fermentation | from API 20E |
| 68371 | 62318 ChEBI | D-lyxose | - | builds acid from | from API 50CH acid |
| 68379 | 16899 ChEBI | D-mannitol | - | fermentation | from API Coryne |
| 68371 | 16899 ChEBI | D-mannitol | - | builds acid from | from API 50CH acid |
| 68368 | 16899 ChEBI | D-mannitol | - | fermentation | from API 20E |
| 68369 | 16024 ChEBI | D-mannose | + | assimilation | from API 20NE |
| 68379 | 16988 ChEBI | D-ribose | - | fermentation | from API Coryne |
| 68371 | 17924 ChEBI | D-sorbitol | - | builds acid from | from API 50CH acid |
| 68371 | 16443 ChEBI | D-tagatose | - | builds acid from | from API 50CH acid |
| 68379 | 65327 ChEBI | D-xylose | - | fermentation | from API Coryne |
| 68371 | 65327 ChEBI | D-xylose | - | builds acid from | from API 50CH acid |
| 68371 | 17113 ChEBI | erythritol | - | builds acid from | from API 50CH acid |
| 68379 | 4853 ChEBI | esculin | - | hydrolysis | from API Coryne |
| 116340 | 4853 ChEBI | esculin | - | hydrolysis | |
| 68371 | 4853 ChEBI | esculin | - | builds acid from | from API 50CH acid |
| 68369 | 4853 ChEBI | esculin | - | hydrolysis | from API 20NE |
| 18438 | 28757 ChEBI | fructose | - | ||
| 68371 | 16813 ChEBI | galactitol | - | builds acid from | from API 50CH acid |
| 68379 | 5291 ChEBI | gelatin | + | hydrolysis | from API Coryne |
| 68369 | 5291 ChEBI | gelatin | - | hydrolysis | from API 20NE |
| 68368 | 5291 ChEBI | gelatin | - | hydrolysis | from API 20E |
| 68371 | 28066 ChEBI | gentiobiose | - | builds acid from | from API 50CH acid |
| 68371 | 24265 ChEBI | gluconate | - | builds acid from | from API 50CH acid |
| 18438 | 17234 ChEBI | glucose | + | ||
| 68371 | 17754 ChEBI | glycerol | - | builds acid from | from API 50CH acid |
| 68379 | 28087 ChEBI | glycogen | - | fermentation | from API Coryne |
| 68371 | 28087 ChEBI | glycogen | - | builds acid from | from API 50CH acid |
| 116340 | 606565 ChEBI | hippurate | + | hydrolysis | |
| 68371 | 15443 ChEBI | inulin | - | builds acid from | from API 50CH acid |
| 68371 | 30849 ChEBI | L-arabinose | - | builds acid from | from API 50CH acid |
| 68368 | 30849 ChEBI | L-arabinose | - | fermentation | from API 20E |
| 68371 | 18403 ChEBI | L-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 18287 ChEBI | L-fucose | + | builds acid from | from API 50CH acid |
| 68371 | 62345 ChEBI | L-rhamnose | - | builds acid from | from API 50CH acid |
| 68368 | 62345 ChEBI | L-rhamnose | - | fermentation | from API 20E |
| 68371 | 17266 ChEBI | L-sorbose | - | builds acid from | from API 50CH acid |
| 68371 | 65328 ChEBI | L-xylose | - | builds acid from | from API 50CH acid |
| 68379 | 17716 ChEBI | lactose | - | fermentation | from API Coryne |
| 68371 | 17716 ChEBI | lactose | - | builds acid from | from API 50CH acid |
| 68368 | 25094 ChEBI | lysine | - | degradation | from API 20E |
| 68369 | 25115 ChEBI | malate | + | assimilation | from API 20NE |
| 68379 | 17306 ChEBI | maltose | - | fermentation | from API Coryne |
| 68371 | 17306 ChEBI | maltose | - | builds acid from | from API 50CH acid |
| 18438 | 29864 ChEBI | mannitol | - | ||
| 68371 | 6731 ChEBI | melezitose | - | builds acid from | from API 50CH acid |
| 68371 | 28053 ChEBI | melibiose | - | builds acid from | from API 50CH acid |
| 68368 | 28053 ChEBI | melibiose | - | fermentation | from API 20E |
| 68371 | 320061 ChEBI | methyl alpha-D-glucopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 43943 ChEBI | methyl alpha-D-mannoside | - | builds acid from | from API 50CH acid |
| 68371 | 74863 ChEBI | methyl beta-D-xylopyranoside | - | builds acid from | from API 50CH acid |
| 18438 | 17268 ChEBI | myo-inositol | + | ||
| 68371 | 17268 ChEBI | myo-inositol | - | builds acid from | from API 50CH acid |
| 68368 | 17268 ChEBI | myo-inositol | - | fermentation | from API 20E |
| 68371 | 59640 ChEBI | N-acetylglucosamine | - | builds acid from | from API 50CH acid |
| 68379 | 17632 ChEBI | nitrate | - | reduction | from API Coryne |
| 116340 | 17632 ChEBI | nitrate | + | reduction | |
| 116340 | 17632 ChEBI | nitrate | - | respiration | |
| 68369 | 17632 ChEBI | nitrate | + | reduction | from API 20NE |
| 116340 | 16301 ChEBI | nitrite | - | reduction | |
| 68368 | 18257 ChEBI | ornithine | - | degradation | from API 20E |
| 68371 | 0 ChEBI | Potassium 2-ketogluconate | - | builds acid from | from API 50CH acid |
| 68371 | 0 ChEBI | Potassium 5-ketogluconate | + | builds acid from | from API 50CH acid |
| 18438 | 16634 ChEBI | raffinose | - | ||
| 68371 | 16634 ChEBI | raffinose | - | builds acid from | from API 50CH acid |
| 18438 | 26546 ChEBI | rhamnose | - | ||
| 68371 | 15963 ChEBI | ribitol | - | builds acid from | from API 50CH acid |
| 68371 | 17814 ChEBI | salicin | - | builds acid from | from API 50CH acid |
| 68368 | 30911 ChEBI | sorbitol | - | fermentation | from API 20E |
| 68371 | 28017 ChEBI | starch | - | builds acid from | from API 50CH acid |
| 18438 | 17992 ChEBI | sucrose | - | ||
| 68379 | 17992 ChEBI | sucrose | + | fermentation | from API Coryne |
| 68371 | 17992 ChEBI | sucrose | - | builds acid from | from API 50CH acid |
| 68368 | 17992 ChEBI | sucrose | - | fermentation | from API 20E |
| 68371 | 27082 ChEBI | trehalose | - | builds acid from | from API 50CH acid |
| 68369 | 27897 ChEBI | tryptophan | - | energy source | from API 20NE |
| 68368 | 27897 ChEBI | tryptophan | - | energy source | from API 20E |
| 68371 | 32528 ChEBI | turanose | - | builds acid from | from API 50CH acid |
| 68379 | 16199 ChEBI | urea | + | hydrolysis | from API Coryne |
| 68369 | 16199 ChEBI | urea | + | hydrolysis | from API 20NE |
| 68368 | 16199 ChEBI | urea | + | hydrolysis | from API 20E |
| 68371 | 17151 ChEBI | xylitol | - | builds acid from | from API 50CH acid |
| 18438 | 18222 ChEBI | xylose | - |
| @ref | Metabolite | Is sensitive | Is resistant | |
|---|---|---|---|---|
| 116340 | 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate) |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 116340 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 68379 | alkaline phosphatase | - | 3.1.3.1 | from API Coryne |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | - | 3.2.1.20 | from API zym |
| 68379 | alpha-glucosidase | + | 3.2.1.20 | from API Coryne |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 116340 | amylase | + | ||
| 68369 | arginine dihydrolase | - | 3.5.3.6 | from API 20NE |
| 68368 | arginine dihydrolase | - | 3.5.3.6 | from API 20E |
| 68382 | beta-galactosidase | - | 3.2.1.23 | from API zym |
| 116340 | beta-galactosidase | - | 3.2.1.23 | |
| 68379 | beta-galactosidase | + | 3.2.1.23 | from API Coryne |
| 68368 | beta-galactosidase | - | 3.2.1.23 | from API 20E |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68379 | beta-glucosidase | - | 3.2.1.21 | from API Coryne |
| 68369 | beta-glucosidase | - | 3.2.1.21 | from API 20NE |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 68379 | beta-glucuronidase | + | 3.2.1.31 | from API Coryne |
| 116340 | caseinase | - | 3.4.21.50 | |
| 116340 | catalase | + | 1.11.1.6 | |
| 116340 | DNase | - | ||
| 116340 | gamma-glutamyltransferase | - | 2.3.2.2 | |
| 116340 | gelatinase | - | ||
| 68369 | gelatinase | - | from API 20NE | |
| 68379 | gelatinase | + | from API Coryne | |
| 68368 | gelatinase | - | from API 20E | |
| 116340 | lecithinase | - | ||
| 116340 | lipase | - | ||
| 68382 | lipase (C 14) | - | from API zym | |
| 116340 | lysine decarboxylase | - | 4.1.1.18 | |
| 68368 | lysine decarboxylase | - | 4.1.1.18 | from API 20E |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68379 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API Coryne |
| 116340 | ornithine decarboxylase | - | 4.1.1.17 | |
| 68368 | ornithine decarboxylase | - | 4.1.1.17 | from API 20E |
| 116340 | oxidase | - | ||
| 116340 | protease | - | ||
| 68379 | pyrazinamidase | - | 3.5.1.B15 | from API Coryne |
| 68379 | pyrrolidonyl arylamidase | + | 3.4.19.3 | from API Coryne |
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 68368 | tryptophan deaminase | - | 4.1.99.1 | from API 20E |
| 116340 | tween esterase | - | ||
| 116340 | urease | + | 3.5.1.5 | |
| 68379 | urease | + | 3.5.1.5 | from API Coryne |
| 68369 | urease | + | 3.5.1.5 | from API 20NE |
| 68368 | urease | + | 3.5.1.5 | from API 20E |
| @ref | Control | Alkaline phosphatase | Esterase (C 4) | 2-naphtyl caprylateEsterase Lipase (C 8) | Lipase (C 14) | L-leucyl-2-naphthylamideLeucine arylamidase | L-valyl-2-naphthylamideValine arylamidase | L-cystyl-2-naphthylamideCystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18438 | not determinedn.d. | + | - | + | - | + | + | + | - | - | + | + | - | - | - | - | - | - | - | - | |
| 116340 | - | - | - | - | - | + | - | - | - | - | + | + | - | - | - | - | - | - | - | - | |
| 8708 | - | - | + | +/- | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| @ref | ControlQ | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 116340 | not determinedn.d. | - | - | - | - | +/- | - | - | - | - | - | + | + | +/- | - | - | - | - | - | - | - | - | - | - | - | - | - | +/- | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | +/- | - | - | - | + |
| Cat1 | Cat2 | Cat3 | |
|---|---|---|---|
| #Host | #Human | #Child | |
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
Global distribution of 16S sequence X84440 (>99% sequence identity) for Corynebacterium ammoniagenes subclade from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | ASM194142v1 assembly for Corynebacterium ammoniagenes DSM 20306 DSM 20306 = 9.6 | complete | 649754 | 99.42 | ||||
| 67770 | ASM16411v1 assembly for Corynebacterium ammoniagenes DSM 20306 | scaffold | 649754 | 72.66 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | aerobe | 82.05 | no |
| 125439 | gram_stain | BacteriaNetⓘ | variable | 40.78 | no |
| 125439 | motility | BacteriaNetⓘ | no | 62.96 | no |
| 125439 | spore_formation | BacteriaNetⓘ | no | 94.84 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 92.96 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 95.24 | no |
| 125438 | aerobic | aerobicⓘ | yes | 76.85 | yes |
| 125438 | spore-forming | spore-formingⓘ | no | 76.40 | no |
| 125438 | thermophilic | thermophileⓘ | no | 93.50 | no |
| 125438 | flagellated | motile2+ⓘ | no | 93.00 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| In Silico Prediction and Analysis of Unusual Lantibiotic Resistance Operons in the Genus Corynebacterium. | Goldbeck O, Weixler D, Eikmanns BJ, Riedel CU. | Microorganisms | 10.3390/microorganisms9030646 | 2021 | ||
| Identification and Characterization of Corynaridin, a Novel Linaridin from Corynebacterium lactis. | Pashou E, Reich SJ, Reiter A, Weixler D, Eikmanns BJ, Oldiges M, Riedel CU, Goldbeck O. | Microbiol Spectr | 10.1128/spectrum.01756-22 | 2023 | ||
| The Role of Microorganisms and Carbon-to-Nitrogen Ratios for Microbial Protein Production from Bioethanol. | Van Peteghem L, Sakarika M, Matassa S, Rabaey K. | Appl Environ Microbiol | 10.1128/aem.01188-22 | 2022 | ||
| The Metano Modeling Toolbox MMTB: An Intuitive, Web-Based Toolbox Introduced by Two Use Cases. | Koblitz J, Will SE, Riemer SA, Ulas T, Neumann-Schaal M, Schomburg D. | Metabolites | 10.3390/metabo11020113 | 2021 | ||
| Enzymology | Quantification of Propionibacterium acidipropionici P169 bacteria in environmental samples by use of strain-specific primers derived by suppressive subtractive hybridization. | Peng M, Smith AH, Rehberger TG. | Appl Environ Microbiol | 10.1128/aem.02586-10 | 2011 | |
| RiboTaxa: combined approaches for rRNA genes taxonomic resolution down to the species level from metagenomics data revealing novelties. | Chakoory O, Comtet-Marre S, Peyret P. | NAR Genom Bioinform | 10.1093/nargab/lqac070 | 2022 | ||
| Metabolism | Lactic acid bacteria as a cell factory for riboflavin production. | Thakur K, Tomar SK, De S. | Microb Biotechnol | 10.1111/1751-7915.12335 | 2016 | |
| Metabolism | A novel approach for the prediction of species-specific biotransformation of xenobiotic/drug molecules by the human gut microbiota. | Sharma AK, Jaiswal SK, Chaudhary N, Sharma VK. | Sci Rep | 10.1038/s41598-017-10203-6 | 2017 | |
| Genetics | Systematic genome assessment of B-vitamin biosynthesis suggests co-operation among gut microbes. | Magnusdottir S, Ravcheev D, de Crecy-Lagard V, Thiele I. | Front Genet | 10.3389/fgene.2015.00148 | 2015 | |
| Genetics | Comparative Genomic Analysis of the Human Gut Microbiome Reveals a Broad Distribution of Metabolic Pathways for the Degradation of Host-Synthetized Mucin Glycans and Utilization of Mucin-Derived Monosaccharides. | Ravcheev DA, Thiele I. | Front Genet | 10.3389/fgene.2017.00111 | 2017 | |
| Enzymology | In situ probing of gram-positive bacteria with high DNA G + C content using 23S rRNA-targeted oligonucleotides. | Roller C, Wagner M, Amann R, Ludwig W, Schleifer KH. | Microbiology (Reading) | 10.1099/00221287-140-10-2849 | 1994 | |
| Metabolism | Crystal structure of PhnF, a GntR-family transcriptional regulator of phosphate transport in Mycobacterium smegmatis. | Gebhard S, Busby JN, Fritz G, Moreland NJ, Cook GM, Lott JS, Baker EN, Money VA. | J Bacteriol | 10.1128/jb.01965-14 | 2014 | |
| Environment-mediated interactions cause an externalized and collective memory in bacteria. | Gajrani S, Ye X, Ratzke C. | ISME J | 10.1093/ismejo/wraf173 | 2025 | ||
| Fast growth can counteract antibiotic susceptibility in shaping microbial community resilience to antibiotics. | Amor DR, Gore J. | Proc Natl Acad Sci U S A | 10.1073/pnas.2116954119 | 2022 | ||
| Modifying and reacting to the environmental pH can drive bacterial interactions. | Ratzke C, Gore J. | PLoS Biol | 10.1371/journal.pbio.2004248 | 2018 | ||
| Transient invaders can induce shifts between alternative stable states of microbial communities. | Amor DR, Ratzke C, Gore J. | Sci Adv | 10.1126/sciadv.aay8676 | 2020 | ||
| Identification of yacE (coaE) as the structural gene for dephosphocoenzyme A kinase in Escherichia coli K-12. | Mishra P, Park PK, Drueckhammer DG. | J Bacteriol | 10.1128/jb.183.9.2774-2778.2001 | 2001 | ||
| Enzymology | Rapid identification of bacteria from positive blood cultures by terminal restriction fragment length polymorphism profile analysis of the 16S rRNA gene. | Christensen JE, Stencil JA, Reed KD. | J Clin Microbiol | 10.1128/jcm.41.8.3790-3800.2003 | 2003 | |
| Novel ZnO/polyacrylate composites with antibacterial activity against C. ammoniagenes to prevent skin infections. | Cruz-Hernandez M, Velazquez-Herrera FD, Landeta G, Giovanela M, da Silva Crespo J, Fetter G. | Microb Pathog | 10.1016/j.micpath.2025.107563 | 2025 | ||
| Developing a High-Umami, Low-Salt Soy Sauce through Accelerated Moromi Fermentation with Corynebacterium and Lactiplantibacillus Strains. | Wang LH, Qu WH, Xu YN, Xia SG, Xue QQ, Jiang XM, Liu HY, Xue CH, Wen YQ. | Foods | 10.3390/foods13091386 | 2024 | ||
| Genetics | A relationship between body size and the gut microbiome suggests a conservation strategy. | Xin T, Ye Q, Hu D. | Microbiol Spectr | 10.1128/spectrum.00294-25 | 2025 | |
| Structural Insights into the Substrate Range of a Bacterial Monoamine Oxidase. | Muellers SN, Tararina MA, Kuzmanovic U, Galagan JE, Allen KN. | Biochemistry | 10.1021/acs.biochem.2c00540 | 2023 | ||
| Genetics | Fermentation-driven microbial and metabolic shifts in filler tobacco leaves of different grades. | He C, Yang S, Dong S, Wang S, Zhang P, Yang Y, Xu D, Yang R, Zeng B, Hu Y, Zhang Q. | Front Microbiol | 10.3389/fmicb.2025.1651289 | 2025 | |
| Efficacy Of N-Acetyl-Cysteine as Adjuvant Therapy for Diabetic Foot Osteomyelitis: An Open-Label Randomized Controlled Trial. | Hooshmand Gharabagh L, Heydaroghli M, Esmaeili A. | Arch Iran Med | 10.34172/aim.33355 | 2025 | ||
| Enzymology | Functional characterization of the putative FAD synthase from Mycoplasma hyopneumoniae. | Cattani AM, Pinheiro CV, Schrank IS, Siqueira FM. | FEMS Microbiol Lett | 10.1093/femsle/fnab008 | 2021 | |
| Genetics | Development of a CRISPR/Cas9 genome editing toolbox for Corynebacterium stationis and its application in hypoxanthine biosynthesis. | Ouyang Z, Zhang X, Hou X, Huang J, Lin Y, Zheng S. | Synth Syst Biotechnol | 10.1016/j.synbio.2025.06.010 | 2025 | |
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| Metabolism | The lycopene cyclase CrtY from Pantoea ananatis (formerly Erwinia uredovora) catalyzes an FADred-dependent non-redox reaction. | Yu Q, Schaub P, Ghisla S, Al-Babili S, Krieger-Liszkay A, Beyer P. | J Biol Chem | 10.1074/jbc.m109.091843 | 2010 | |
| Metabolism | Metallation and mismetallation of iron and manganese proteins in vitro and in vivo: the class I ribonucleotide reductases as a case study. | Cotruvo JA, Stubbe J. | Metallomics | 10.1039/c2mt20142a | 2012 | |
| Enzymology | Streptococcus sanguinis class Ib ribonucleotide reductase: high activity with both iron and manganese cofactors and structural insights. | Makhlynets O, Boal AK, Rhodes DV, Kitten T, Rosenzweig AC, Stubbe J. | J Biol Chem | 10.1074/jbc.m113.533554 | 2014 | |
| Phylogeny | Characterization of intestinal microbiota and response to dietary virginiamycin supplementation in the broiler chicken. | Dumonceaux TJ, Hill JE, Hemmingsen SM, Van Kessel AG. | Appl Environ Microbiol | 10.1128/aem.72.4.2815-2823.2006 | 2006 | |
| Metabolism | Gene expression analysis of Corynebacterium glutamicum subjected to long-term lactic acid adaptation. | Jakob K, Satorhelyi P, Lange C, Wendisch VF, Silakowski B, Scherer S, Neuhaus K. | J Bacteriol | 10.1128/jb.00082-07 | 2007 | |
| Enzymology | Flavin nucleotide metabolism in plants: monofunctional enzymes synthesize fad in plastids. | Sandoval FJ, Zhang Y, Roje S. | J Biol Chem | 10.1074/jbc.m803416200 | 2008 | |
| Metabolism | Functional analysis of the twin-arginine translocation pathway in Corynebacterium glutamicum ATCC 13869. | Kikuchi Y, Date M, Itaya H, Matsui K, Wu LF. | Appl Environ Microbiol | 10.1128/aem.01528-06 | 2006 | |
| Associations between the ecology of virulent Rhodococcus equi and the epidemiology of R. equi pneumonia on Australian thoroughbred farms. | Muscatello G, Anderson GA, Gilkerson JR, Browning GF. | Appl Environ Microbiol | 10.1128/aem.00495-06 | 2006 | ||
| Metabolism | The role of UPF0157 in the folding of M. tuberculosis dephosphocoenzyme A kinase and the regulation of the latter by CTP. | Walia G, Kumar P, Surolia A. | PLoS One | 10.1371/journal.pone.0007645 | 2009 | |
| Metabolism | Class I ribonucleotide reductases: metallocofactor assembly and repair in vitro and in vivo. | Cotruvo JA, Stubbe J. | Annu Rev Biochem | 10.1146/annurev-biochem-061408-095817 | 2011 | |
| Ribonucleotide reduction in Mycobacterium tuberculosis: function and expression of genes encoding class Ib and class II ribonucleotide reductases. | Dawes SS, Warner DF, Tsenova L, Timm J, McKinney JD, Kaplan G, Rubin H, Mizrahi V. | Infect Immun | 10.1128/iai.71.11.6124-6131.2003 | 2003 | ||
| Metabolism | Mössbauer properties of the diferric cluster and the differential iron(II)-binding affinity of the iron sites in protein R2 of class Ia Escherichia coli ribonucleotide reductase: a DFT/electrostatics study. | Han WG, Sandala GM, Giammona DA, Bashford D, Noodleman L. | Dalton Trans | 10.1039/c1dt10950b | 2011 | |
| Genetics | Complete genome sequence and analysis of the multiresistant nosocomial pathogen Corynebacterium jeikeium K411, a lipid-requiring bacterium of the human skin flora. | Tauch A, Kaiser O, Hain T, Goesmann A, Weisshaar B, Albersmeier A, Bekel T, Bischoff N, Brune I, Chakraborty T, Kalinowski J, Meyer F, Rupp O, Schneiker S, Viehoever P, Puhler A. | J Bacteriol | 10.1128/jb.187.13.4671-4682.2005 | 2005 | |
| Biotechnology | Complete genome sequence of Corynebacterium variabile DSM 44702 isolated from the surface of smear-ripened cheeses and insights into cheese ripening and flavor generation. | Schroder J, Maus I, Trost E, Tauch A. | BMC Genomics | 10.1186/1471-2164-12-545 | 2011 | |
| Metabolism | Biosynthesis of covalently bound flavin: isolation and in vitro flavinylation of the monomeric sarcosine oxidase apoprotein. | Hassan-Abdallah A, Bruckner RC, Zhao G, Jorns MS. | Biochemistry | 10.1021/bi047271x | 2005 | |
| Enzymology | Ribonucleotide reduction in Pseudomonas species: simultaneous presence of active enzymes from different classes. | Jordan A, Torrents E, Sala I, Hellman U, Gibert I, Reichard P. | J Bacteriol | 10.1128/jb.181.13.3974-3980.1999 | 1999 | |
| Genetics | Re-annotating the Mycoplasma pneumoniae genome sequence: adding value, function and reading frames. | Dandekar T, Huynen M, Regula JT, Ueberle B, Zimmermann CU, Andrade MA, Doerks T, Sanchez-Pulido L, Snel B, Suyama M, Yuan YP, Herrmann R, Bork P. | Nucleic Acids Res | 10.1093/nar/28.17.3278 | 2000 | |
| Biotechnology | Genetic control of biosynthesis and transport of riboflavin and flavin nucleotides and construction of robust biotechnological producers. | Abbas CA, Sibirny AA. | Microbiol Mol Biol Rev | 10.1128/mmbr.00030-10 | 2011 | |
| Genetics | Genome-Based Taxonomic Classification of the Phylum Actinobacteria. | Nouioui I, Carro L, Garcia-Lopez M, Meier-Kolthoff JP, Woyke T, Kyrpides NC, Pukall R, Klenk HP, Goodfellow M, Goker M. | Front Microbiol | 10.3389/fmicb.2018.02007 | 2018 | |
| Metabolism | Changes in the size and composition of intracellular pools of nonesterified coenzyme A and coenzyme A thioesters in aerobic and facultatively anaerobic bacteria. | Chohnan S, Furukawa H, Fujio T, Nishihara H, Takamura Y. | Appl Environ Microbiol | 10.1128/aem.63.2.553-560.1997 | 1997 | |
| Metabolism | Light-inducible carotenoid production controlled by a MarR-type regulator in Corynebacterium glutamicum. | Sumi S, Suzuki Y, Matsuki T, Yamamoto T, Tsuruta Y, Mise K, Kawamura T, Ito Y, Shimada Y, Watanabe E, Watanabe S, Toriyabe M, Takano Shiratori H, Ueda K, Takano H. | Sci Rep | 10.1038/s41598-019-49384-7 | 2019 | |
| Metabolism | Isolating promoters from Corynebacterium ammoniagenes ATCC 6871 and application in CoA synthesis. | Hou Y, Chen S, Wang J, Liu G, Wu S, Tao Y | BMC Biotechnol | 10.1186/s12896-019-0568-9 | 2019 | |
| Enzymology | Kinetic resolutions of indan derivatives using bacteria. | Tarui N, Watanabe H, Fukatsu K, Ohkawa S, Nakahama K | Biosci Biotechnol Biochem | 10.1271/bbb.66.464 | 2002 | |
| Phylogeny | [Free mycolic acids of the cells of coryneform and Nocardia-like bacteria]. | Koronelli TV, Rozynov BV, Kvasnikov EI, Nogina TM, Nesterenko OA | Mikrobiologiia | 1984 | ||
| Enzymology | Distribution of membrane-bound monoamine oxidase in bacteria. | Murooka Y, Doi N, Harada T | Appl Environ Microbiol | 10.1128/aem.38.4.565-569.1979 | 1979 | |
| Genetics | Genome sequence and description of Corynebacterium ihumii sp. nov. | Padmanabhan R, Dubourg G, Lagier JC, Couderc C, Michelle C, Raoult D, Fournier PE. | Stand Genomic Sci | 10.4056/sigs.5149006 | 2014 | |
| Phylogeny | Corynebacterium mooreparkense sp. nov. and Corynebacterium casei sp. nov., isolated from the surface of a smear-ripened cheese. | Brennan NM, Brown R, Goodfellow M, Ward AC, Beresford TP, Simpson PJ, Fox PF, Cogan TM. | Int J Syst Evol Microbiol | 10.1099/00207713-51-3-843 | 2001 |
| #8708 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20306 |
| #18438 | Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig . |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20216 | Curators of the JMRC: Jena Microbial Resource Collection (JMRC): |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #38092 | ; Curators of the CIP; |
| #54470 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 38796 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68368 | Automatically annotated from API 20E . |
| #68369 | Automatically annotated from API 20NE . |
| #68371 | Automatically annotated from API 50CH acid . |
| #68379 | Automatically annotated from API Coryne . |
| #68382 | Automatically annotated from API zym . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #116340 | Collection of Institut Pasteur ; Curators of the CIP; CIP 101283 |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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