Corynebacterium xerosis (DSM 107249, BL-383-APC-2I)

Name: Corynebacterium xerosis (DSM 107249, BL-383-APC-2I)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158921

Type strain

Strain Designation BL-383-APC-2I

Culture col. no. DSM 107249 BL-383-APC-2I

NCBI tax ID(s) 1725

Special Collections DSMZ Pig DZIF

History DSMZ <- T. Clavel; TU Munich, Freising-Weihenstephan, Germany;

Links

Corynebacterium xerosis BL-383-APC-2I is a bacterium that was isolated from feces; pig, 5 month old, genotype: APC1311/+ referring to the adenomatous-polyposis-coli protein.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 404072

DSM 107249

@ref 20215

Last LPSN update 2026-05-29 08:44:04

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Corynebacteriaceae

Genus Corynebacterium

Species Corynebacterium xerosis

Full scientific name Corynebacterium xerosis (Lehmann and Neumann 1896) Lehmann and Neumann 1899 (Approved Lists 1980)

Synonyms (1)

"Bacillus xerosis"

BacDive ID	Other strains from **Corynebacterium xerosis** (18)	Type strain
3131	C. xerosis CCUG 56051, CCM 2824, NCTC 11861, CIP 100653, ... (type strain)
3129	C. xerosis DSM 7176, ATCC 809
3130	C. xerosis DSM 20170, ATCC 7711, CCUG 45245, IAM 12431, ...
3132	C. xerosis WS 1869 AH1-1, DSM 43607
3133	C. xerosis K.132, DSM 44363, CCUG 39723
128378	C. xerosis STI10636, NCTC 7238
141239	C. xerosis CCUG 364
146535	C. xerosis CCUG 31385
147477	C. xerosis CCUG 33662
151985	C. xerosis CCUG 45431
154400	C. xerosis CCUG 53405
154401	C. xerosis CCUG 53406
154984	C. xerosis CCUG 55954
155281	C. xerosis CCUG 57194
155282	C. xerosis CCUG 57195
155283	C. xerosis CCUG 57196
155284	C. xerosis CCUG 57197
161332	C. xerosis JCM 1325, CCM 1729, CECT 538, IAM 12583, ...

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	91.702
125438		92
125438	positive	91.413

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
65743	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)		Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
65743	positive	growth	37

Physiology and metabolism

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Host	#Mammals	#Suidae (Pig,Swine)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
65743	feces; pig, 5 month old, genotype: APC1311/+ referring to the adenomatous-polyposis-coli (APC) protein	Munich	Germany	DEU	Europe

Taxonmaps

69479

Global distribution of 16S sequence MN537528 (>99% sequence identity) for Corynebacterium xerosis from Microbeatlas

Aquatic Samples	698
Soil Samples	495
Animal Samples	5206
Plant Samples	121
Total Samples	6520

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM1284391v1 assembly for Corynebacterium xerosis BL-383-APC-2I	contig	GCA_012843915	1725.24	1725	72.8

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
65743	Corynebacterium sp. strain DSM 107249 16S ribosomal RNA gene, partial sequence	MN537528	1443		1720

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1284391v1 assembly for Corynebacterium xerosis BL-383-APC-2I
NCBI: GCA_012843915

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	88.23	no
125439	gram_stain	BacteriaNetⓘ	positive	91.70	no
125439	spore_formation	BacteriaNetⓘ	no	87.20	no
125439	motility	BacteriaNetⓘ	no	82.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Corynebacterium xerosis BL-383-APC-2I
NCBI: GCA_012843915.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	91.41	no
125438	anaerobic	anaerobicⓘ	no	91.74	no
125438	aerobic	aerobicⓘ	yes	59.98	no
125438	spore-forming	spore-formingⓘ	no	81.68	no
125438	thermophilic	thermophileⓘ	no	96.97	yes
125438	flagellated	motile2+ⓘ	no	92.00	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65743	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 107249
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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