Strain identifier
BacDive ID: 158921
Type strain: 
Species: Corynebacterium xerosis
Strain Designation: BL-383-APC-2I
Strain history: <- T. Clavel; TU Munich, Freising-Weihenstephan, Germany;
NCBI tax ID(s): 1725 (species)
version 9.3 (current version)
General
@ref: 65743
BacDive-ID: 158921
DSM-Number: 107249
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-positive
description: Corynebacterium xerosis BL-383-APC-2I is a mesophilic, Gram-positive bacterium that was isolated from feces; pig, 5 month old, genotype: APC1311/+ referring to the adenomatous-polyposis-coli protein.
NCBI tax id
- NCBI tax id: 1725
- Matching level: species
strain history
- @ref: 65743
- history: <- T. Clavel; TU Munich, Freising-Weihenstephan, Germany;
doi: 10.13145/bacdive158921.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Corynebacteriaceae
- genus: Corynebacterium
- species: Corynebacterium xerosis
- full scientific name: Corynebacterium xerosis (Lehmann and Neumann 1896) Lehmann and Neumann 1899 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Bacillus xerosis
@ref: 65743
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Mycobacteriales
family: Corynebacteriaceae
genus: Corynebacterium
species: Corynebacterium xerosis
full scientific name: Corynebacterium xerosis (Lehmann and Neumann 1896) Lehmann and Neumann 1899 emend. Nouioui et al. 2018
strain designation: BL-383-APC-2I
type strain: no
Morphology
cell morphology
| @ref | gram stain | confidence | motility |
|---|---|---|---|
| 125439 | positive | 96.9 | |
| 125438 | 92 | no | |
| 125438 | positive | 91.413 |
Culture and growth conditions
culture medium
- @ref: 65743
- name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
- growth: yes
- link: https://mediadive.dsmz.de/medium/92
- composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
culture temp
- @ref: 65743
- growth: positive
- type: growth
- temperature: 37
Isolation, sampling and environmental information
isolation
- @ref: 65743
- sample type: feces; pig, 5 month old, genotype: APC1311/+ referring to the adenomatous-polyposis-coli (APC) protein
- geographic location: Munich
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
| #Host | #Mammals | #Suidae (Pig,Swine) |
taxonmaps
- @ref: 69479
- File name: preview.99_1838.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_1038;97_1212;98_1453;99_1838&stattab=map
- Last taxonomy: Corynebacterium xerosis
- 16S sequence: MN537528
- Sequence Identity:
- Total samples: 6520
- soil counts: 495
- aquatic counts: 698
- animal counts: 5206
- plant counts: 121
Sequence information
16S sequences
- @ref: 65743
- description: Corynebacterium sp. strain DSM 107249 16S ribosomal RNA gene, partial sequence
- accession: MN537528
- length: 1443
- database: nuccore
- NCBI tax ID: 1720
Genome sequences
- @ref: 66792
- description: Corynebacterium xerosis BL-383-APC-2I
- accession: GCA_012843915
- assembly level: contig
- database: ncbi
- NCBI tax ID: 1725
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 91.413 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 91.735 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 59.982 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 81.682 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 96.967 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 92 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 75.2 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 75.8 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | positive | 96.9 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 88.2 |
External links
@ref: 65743
culture collection no.: DSM 107249
straininfo link
- @ref: 111440
- straininfo: 404072
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 65743 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-107249 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 107249) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 111440 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID404072.1 | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |