Strain identifier

BacDive ID: 158920

Type strain: No

Species: Corynebacterium ammoniagenes

Strain Designation: BL-383-APC-2C

Strain history: <- T. Clavel, TU Munich, Freising-Weihenstephan, Germany <- D. Wylensek; BL-383-APC-2C

NCBI tax ID(s): 1697 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 8.1 (current version)

General

@ref: 65742

BacDive-ID: 158920

DSM-Number: 104746

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, human pathogen

description: Corynebacterium ammoniagenes BL-383-APC-2C is a mesophilic human pathogen that was isolated from feces; pig, 5 month old, genotype: APC1311/+ referring to the adenomatous-polyposis-coli protein.

NCBI tax id

  • NCBI tax id: 1697
  • Matching level: species

strain history

  • @ref: 65742
  • history: <- T. Clavel, TU Munich, Freising-Weihenstephan, Germany <- D. Wylensek; BL-383-APC-2C

doi: 10.13145/bacdive158920.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Corynebacteriaceae
  • genus: Corynebacterium
  • species: Corynebacterium ammoniagenes
  • full scientific name: Corynebacterium ammoniagenes (Cooke and Keith 1927) Collins 1987

  • synonyms

    @refsynonym
    20215Brevibacterium ammoniagenes
    20215Bacterium ammoniagenes

@ref: 65742

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Mycobacteriales

family: Corynebacteriaceae

genus: Corynebacterium

species: Corynebacterium ammoniagenes

full scientific name: Corynebacterium ammoniagenes (Cooke and Keith 1927) Collins 1987 emend. Nouioui et al. 2018

strain designation: BL-383-APC-2C

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
65742TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://mediadive.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
65742TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545)yeshttps://mediadive.dsmz.de/medium/545Name: TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545) Composition: Casein peptone 17.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l D(+)-Glucose 2.5 g/l K2HPO4 2.5 g/l Distilled water

culture temp

  • @ref: 65742
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 65742
  • sample type: feces; pig, 5 month old, genotype: APC1311/+ referring to the adenomatous-polyposis-coli (APC) protein
  • geographic location: Kranzberg (Bavaria)
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host Body Product#Gastrointestinal tract#Feces (Stool)
#Host#Mammals#Suidae (Pig,Swine)

taxonmaps

  • @ref: 69479
  • File name: preview.99_4127.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_652;97_2519;98_3117;99_4127&stattab=map
  • Last taxonomy: Corynebacterium ammoniagenes subclade
  • 16S sequence: MN537469
  • Sequence Identity:
  • Total samples: 3245
  • soil counts: 242
  • aquatic counts: 123
  • animal counts: 2834
  • plant counts: 46

Safety information

risk assessment

  • @ref: 65742
  • pathogenicity human: yes, in single cases
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 65742
  • description: Corynebacterium ammoniagenes strain DSM 104746 16S ribosomal RNA gene, partial sequence
  • accession: MN537469
  • length: 1476
  • database: ena
  • NCBI tax ID: 1697

Genome sequences

  • @ref: 66792
  • description: Corynebacterium ammoniagenes BL-383-APC-2C
  • accession: GCA_012843925
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 1697

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno94.255no
flagellatedno97.96no
gram-positiveyes92.705no
anaerobicno99.336no
aerobicyes75.215no
halophileyes84.831no
spore-formingno93.631no
thermophileno96.949yes
glucose-utilyes86.131no
glucose-fermentyes53.579no

External links

@ref: 65742

culture collection no.: DSM 104746

straininfo link

  • @ref: 111439
  • straininfo: 397278

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
65742Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-104746Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 104746)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
111439Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID397278.1