Strain identifier
BacDive ID: 158920
Type strain: 
Species: Corynebacterium ammoniagenes
Strain Designation: BL-383-APC-2C
Strain history: <- T. Clavel, TU Munich, Freising-Weihenstephan, Germany <- D. Wylensek; BL-383-APC-2C
NCBI tax ID(s): 1697 (species)
version 9.1 (current version)
General
@ref: 65742
BacDive-ID: 158920
DSM-Number: 104746
keywords: genome sequence, 16S sequence, Bacteria, human pathogen
description: Corynebacterium ammoniagenes BL-383-APC-2C is a human pathogen that was isolated from feces; pig, 5 month old, genotype: APC1311/+ referring to the adenomatous-polyposis-coli protein.
NCBI tax id
- NCBI tax id: 1697
- Matching level: species
strain history
- @ref: 65742
- history: <- T. Clavel, TU Munich, Freising-Weihenstephan, Germany <- D. Wylensek; BL-383-APC-2C
doi: 10.13145/bacdive158920.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Corynebacteriaceae
- genus: Corynebacterium
- species: Corynebacterium ammoniagenes
- full scientific name: Corynebacterium ammoniagenes (Cooke and Keith 1927) Collins 1987
synonyms
@ref synonym 20215 Brevibacterium ammoniagenes 20215 Bacterium ammoniagenes
@ref: 65742
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Mycobacteriales
family: Corynebacteriaceae
genus: Corynebacterium
species: Corynebacterium ammoniagenes
full scientific name: Corynebacterium ammoniagenes (Cooke and Keith 1927) Collins 1987 emend. Nouioui et al. 2018
strain designation: BL-383-APC-2C
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 94 | |
| 69480 | 93.512 | positive |
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 65742 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | yes | https://mediadive.dsmz.de/medium/535 | Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water |
| 65742 | TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545) | yes | https://mediadive.dsmz.de/medium/545 | Name: TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545) Composition: Casein peptone 17.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l D(+)-Glucose 2.5 g/l K2HPO4 2.5 g/l Distilled water |
culture temp
- @ref: 65742
- growth: positive
- type: growth
- temperature: 37
Isolation, sampling and environmental information
isolation
- @ref: 65742
- sample type: feces; pig, 5 month old, genotype: APC1311/+ referring to the adenomatous-polyposis-coli (APC) protein
- geographic location: Kranzberg (Bavaria)
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
| #Host | #Mammals | #Suidae (Pig,Swine) |
taxonmaps
- @ref: 69479
- File name: preview.99_4127.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_652;97_2519;98_3117;99_4127&stattab=map
- Last taxonomy: Corynebacterium ammoniagenes subclade
- 16S sequence: MN537469
- Sequence Identity:
- Total samples: 3245
- soil counts: 242
- aquatic counts: 123
- animal counts: 2834
- plant counts: 46
Safety information
risk assessment
- @ref: 65742
- pathogenicity human: yes, in single cases
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 65742
- description: Corynebacterium ammoniagenes strain DSM 104746 16S ribosomal RNA gene, partial sequence
- accession: MN537469
- length: 1476
- database: nuccore
- NCBI tax ID: 1697
Genome sequences
- @ref: 66792
- description: Corynebacterium ammoniagenes BL-383-APC-2C
- accession: GCA_012843925
- assembly level: contig
- database: ncbi
- NCBI tax ID: 1697
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 93.512 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 94.953 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 76.571 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 75.717 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 93.5 | no |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 94 | no |
External links
@ref: 65742
culture collection no.: DSM 104746
straininfo link
- @ref: 111439
- straininfo: 397278
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 65742 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-104746 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 104746) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 111439 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID397278.1 |