Streptomyces paradoxus (DSM 43350, ATCC 15813, INMI 3180)

Name: Streptomyces paradoxus (DSM 43350, ATCC 15813, INMI 3180)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 15453

Type strain

Culture col. no. DSM 43350 ATCC 15813 INMI 3180 JCM 3052 KCC 3052 15 more

NCBI tax ID(s) 66375

Special Collections DSMZ JCM KCTC JMRC

History DSMZ <- S.T. Williams <- KCC <- V.D. Kutznetsov, RIA <- INMI JCM <-- KCC A-0052 <-- RIA 655 <-- INMI 3180.

Links

Streptomyces paradoxus DSM 43350 is a bacterium that was isolated from soil.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 36505

PCM 2310,ATCC 15813,DSM 43350,JCM 3052,CCRC 12521,IFO 14887,IMET 43491,NRRL B-3457,NRRL B-3483,VKM Ac-645,KCTC 9118,NBRC 14887,BCRC 12521,CGMCC 4.2008,CGMCC 4.1190

@ref 20215

Last LPSN update 2026-05-29 08:28:32

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptomyces

Species Streptomyces paradoxus

Full scientific name Streptomyces paradoxus Goodfellow et al. 1986

Synonyms (2)

Actinosporangium violaceus
Actinosporangium violaceum

BacDive ID	Other strains from **Streptomyces paradoxus** (25)	Type strain
127915	S. paradoxus SF005882,
127916	S. paradoxus SF006132,
127917	S. paradoxus SF006051,
127918	S. paradoxus SF006054,
127919	S. paradoxus SF006085,
127920	S. paradoxus SF006128,
127921	S. paradoxus SF003971,
127922	S. paradoxus SF004038,
127923	S. paradoxus SF001538,
127924	S. paradoxus SF001547,
127925	S. paradoxus SF004158,
127926	S. paradoxus SF004166,
127927	S. paradoxus SF004243,
127928	S. paradoxus SF001802,
127929	S. paradoxus SF001803,
127930	S. paradoxus SF001821,
127931	S. paradoxus SF001830,
127932	S. paradoxus SF001836,
127933	S. paradoxus SF001842,
127934	S. paradoxus SF001899,
127935	S. paradoxus SF001913,
127936	S. paradoxus SF002197,
127937	S. paradoxus SF006438,
127938	S. paradoxus SF006442,
127939	S. paradoxus SF006390,

Morphology

Cell morphology

@ref	Gram stain	Confidence	Motility
125439	positive	96.263
125439		92.111

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
10972	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
10972	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)		Medium recipe at MediaDive	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
10972	positive	growth	28
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	aerobe	90.57
125439	obligate aerobe	99.122

Spore formation

@ref	Spore formation	Confidence
125439		91.04
125438		93.008

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
10972	soil
67770	Soil	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence AB184628 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	0
Soil Samples	30
Animal Samples	18
Plant Samples	2
Total Samples	50

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
10972	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM1420247v1 assembly for Streptomyces paradoxus DSM 43350	scaffold	GCA_014202475	66375.3	2861534081	66375	67.87
124043	ASM3953242v1 assembly for Streptomyces paradoxus JCM 3052	scaffold	GCA_039532425			66375	66.53

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Streptomyces paradoxus gene for 16S ribosomal RNA, partial sequence, strain: JCM 3052	D43975	121	66375
10972	Streptomyces paradoxus gene for 16S rRNA, partial sequence, strain: NBRC 14887	AB184628	1477	66375
124043	Streptomyces paradoxus strain JCM 3052 16S ribosomal RNA gene, partial sequence.	MT760390	1321	66375
124043	Streptomyces paradoxus strain NBRC 14887 (T) 16S ribosomal RNA gene, partial sequence.	MK424310	1447	66375

GC content

@ref	GC-content (mol%)
67770	70.3
67770	71.6

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1420247v1 assembly for Streptomyces paradoxus DSM 43350
NCBI: GCA_014202475

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.12	no
125439	motility	BacteriaNetⓘ	no	92.11	no
125439	gram_stain	BacteriaNetⓘ	positive	96.26	no
125439	spore_formation	BacteriaNetⓘ	yes	91.04	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptomyces paradoxus strain DSM 43350
PATRIC: 66375.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	88.06	no
125438	anaerobic	anaerobicⓘ	no	96.87	no
125438	spore-forming	spore-formingⓘ	yes	93.01	no
125438	aerobic	aerobicⓘ	yes	90.57	no
125438	thermophilic	thermophileⓘ	no	96.50	no
125438	flagellated	motile2+ⓘ	no	87.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	COMPARISON OF THE CELL-WALL COMPOSITION OF MORPHOLOGICALLY DISTINCT ACTINOMYCETES.	YAMAGUCHI T.	J Bacteriol	10.1128/jb.89.2.444-453.1965	1965

References

#10972	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43350
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20216	Curators of the JMRC: Jena Microbial Resource Collection (JMRC):
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Streptomyces paradoxus (DSM 43350, ATCC 15813, INMI 3180)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014202475

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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