Name: Actinosporangium violaceum DSM 43350
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 15453

Type strain:

Species: Actinosporangium violaceum

Culture col. no.: DSM 43350, ATCC 15813, INMI 3180, JCM 3052, KCC 3052, KCC A-0052, RIA 655, BCRC 12521, CGMCC 4.1190, CGMCC 4.2008, IFM 1160, IFO 14887, IMET 43491, KCTC 9118, NBRC 14887, NRRL B-3457, NRRL B-3483, PCM 2310, VKM Ac-645

Strain history: KCC A-0052 <-- RIA 655 <-- INMI 3180.

NCBI tax ID(s): 66375 (species)

SI-ID 36505

ATCC 15813, DSM 43350, JCM 3052, CCRC 12521, IFO 14887, IMET 43491, NRRL B-3457, NRRL B-3483, VKM Ac-645, KCTC 9118, NBRC 14887, BCRC 12521, CGMCC 4.2008, CGMCC 4.1190

Special Collections

Section

Actinosporangium violaceum DSM 43350 is a spore-forming bacterium that was isolated from soil.

spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	Actinosporangium
	Species	Actinosporangium violaceum
	Full Scientific Name (LPSN)	Actinosporangium violaceum corrig. Krassilnikov and Yuan 1961 (Approved Lists 1980)

	Synonym	Actinosporangium violaceus
	Synonym	**Streptomyces paradoxus**

Information on culture and growth conditions Culture and growth conditions

[Ref.: #10972]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #10972]

Culture medium growth

[Ref.: #10972]

Culture medium link

Medium recipe at MediaDive

[Ref.: #10972]

Culture medium composition

expand / minimize

[Ref.: #10972]

Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

[Ref.: #10972]

Culture medium growth

[Ref.: #10972]

Culture medium link

Medium recipe at MediaDive

[Ref.: #10972]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #10972]			growth	28 °C
[Ref.: #67770]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

aerobe Confidence in %90.57

[Ref.: #69480]	Ability of spore formation	yes Confidence in %93.008
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #10972]	Sample type/isolated from	soil

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB184628 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples
Soil Samples	30
Animal Samples	18
Plant Samples	2
Total Samples	50

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #10972]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #10972]	Streptomyces paradoxus gene for 16S rRNA, partial sequence, strain: NBRC 14887	AB184628	1477	GenBank ENA	66375 tax ID
[Ref.: #20218]	Streptomyces paradoxus gene for 16S ribosomal RNA, partial sequence, strain: JCM 3052	D43975	121	GenBank ENA	66375 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces paradoxus DSM 43350	GCA_014202475	scaffold	GenBank ENA	66375 tax ID
[Ref.: #66792]	Streptomyces paradoxus strain DSM 43350	66375.3	wgs	PATRIC	66375 tax ID	*
[Ref.: #66792]	Streptomyces paradoxus DSM 43350	2861534081	draft	JGI IMG/M	66375 tax ID	*

[Ref.: #67770]	GC-content	70.3 mol%
[Ref.: #67770]	GC-content	71.6 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces paradoxus DSM 43350 NCBI: GCA_014202475.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces paradoxus strain DSM 43350 PATRIC: 66375.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	88.058	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.87	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	93.008	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	90.57	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.5	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	87.5	no

Availability in culture collections External links

[Ref.: #10972]

Culture collection no.

DSM 43350, ATCC 15813, INMI 3180, JCM 3052, KCC 3052, KCC A-0052, RIA 655, BCRC 12521, CGMCC 4.1190, CGMCC 4.2008, IFM 1160, IFO 14887, IMET 43491, KCTC 9118, NBRC 14887, NRRL B-3457, NRRL B-3483, PCM 2310, VKM Ac-645

[Ref.: #84541]

SI-ID 36505

References

#10972

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43350

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#84541

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID36505.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces paradoxus DSM 43350

Streptomyces paradoxus strain DSM 43350

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