Name: Streptomyces parvulus DSM 40048
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 15454

Type strain:

Species: Streptomyces parvulus

Culture col. no.: DSM 40048, ATCC 12434, ATCC 19796, CBS 548.68, ETH 12648, ETH 14318, IFO 13193, IMRU 3677, ISP 5048, JCM 4068, NBRC 13193, NCIMB 11240, NRRL B-1628, RIA 1075, RIA 307, BCRC 12046, CBS 418.59, CGMCC 4.0611, HUT 6081, ICMP 12845, ICMP 156, IMET 41380, JCM 4601, LMG 19312, RIA 507, VKM Ac-1063, VTT E-991419

Strain history: KCC S-0068 <-- Y. Okami <-- NRRL B-1628 <-- S. A. Waksman IMRU 3677.

NCBI tax ID(s): 146923 (species)

SI-ID 13333

LMG 19312, ATCC 12434, ATCC 19796, CCRC 12046, DSM 40048, HUT 6081, IFO 13193, IMET 41380, JCM 4068, JCM 4601, NCIMB 11240, NRRL B-1628, VKM Ac-1063, CBS 418.59, AS 4.0611, NBRC 13193, BCRC 12046, ICMP 156, ICMP 12845, NCIB 11240, CGMCC 4.0611, CGMCC 4.1094, VTT E-991419

Other strains from Streptomyces parvulus

S. parvulus Tü 64, DSM 40722, JCM 4682, KCC ...
S. parvulus Tü 113, DSM 40728, ETH 32027
S. parvulus S-20, DSM 40912
S. parvulus ST002904(HKI),

Section

Streptomyces parvulus DSM 40048 is a spore-forming bacterium that produces antibiotic compounds and was isolated from soil.

antibiotic compound production
spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces parvulus**
	Full Scientific Name (LPSN)	Streptomyces parvulus corrig. Waksman and Gregory 1954 (Approved Lists 1980)

Synonym

Streptomyces parvullus

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Motility	no Confidence in %93.801

Multimedia content

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Caption:

Medium 84 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

		Temperature
[Ref.: #9126]	growth	28 °C
[Ref.: #18473]	optimum	30 °C
[Ref.: #67770]	growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %95.16

[Ref.: #9126]	Name of produced compound	actinomycin D
[Ref.: #20216]	Name of produced compound	Actinomycin C1
[Ref.: #20216]	Name of produced compound	Actinomycin D (Dactinomycin, Actinomycin1)

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #18473]		NaCl		maximum	5	%

[Ref.: #18473]	Name of tolerated compound	Lysozyme
[Ref.: #18473]	Tolerance percentage	0.1

	Metabolite	Utilization activity
[Ref.: #18473]	arabinose ChEBI	+/-
[Ref.: #18473]	cellulose ChEBI	-
[Ref.: #18473]	fructose ChEBI	+
[Ref.: #18473]	glucose ChEBI	+
[Ref.: #18473]	mannitol ChEBI	+
[Ref.: #18473]	myo-inositol ChEBI	-
[Ref.: #18473]	raffinose ChEBI	-
[Ref.: #18473]	rhamnose ChEBI	+
[Ref.: #18473]	sucrose ChEBI	-
[Ref.: #18473]	xylose ChEBI	+

	Metabolite production	Metabolite	Production
[Ref.: #67770]		actinomycin D	yes

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9126]	Sample type/isolated from	soil

[Ref.: #67770]	Sample type/isolated from	Soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18473]	Biosafety level	1	German classification
[Ref.: #9126]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces parvulus gene for 16S rRNA, partial sequence	AB122767	565	GenBank ENA	146923 tax ID	*
[Ref.: #20218]	Streptomyces rochei gene for 16S ribosomal RNA, partial sequence, strain: JCM 4601	D44257	121	GenBank ENA	1928 tax ID	*
[Ref.: #20218]	Streptomyces parvulus gene for 16S rRNA, partial sequence, strain: NBRC 13193	AB184326	1476	GenBank ENA	146923 tax ID	*
[Ref.: #20218]	Streptomyces sp. NTRH11 gene for 16S ribosomal RNA, partial sequence	AB920591	1286	GenBank ENA	1571727 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces parvulus JCM 4068	GCA_014648855	scaffold	GenBank ENA	146923 tax ID	*
[Ref.: #66792]	Streptomyces parvulus strain JCM 4068	146923.24	wgs	PATRIC	146923 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces parvulus strain JCM 4068 PATRIC: 146923.24
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces parvulus JCM 4068 NCBI: GCA_014648855.1
[Ref.: #69480]	flagellated	no	98.171	no
[Ref.: #69480]	gram-positive	yes	89.35	no
[Ref.: #69480]	anaerobic	no	99.387	no
[Ref.: #69480]	aerobic	yes	95.137	no
[Ref.: #69480]	halophile	no	91.797	no
[Ref.: #69480]	spore-forming	yes	95.16	no
[Ref.: #69480]	thermophile	no	98.565	yes
[Ref.: #69480]	glucose-util	yes	89.749	yes
[Ref.: #69480]	motile	no	93.801	no
[Ref.: #69480]	glucose-ferment	no	88.948	no

Availability in culture collections External links

[Ref.: #9126]

Culture collection no.

DSM 40048, ATCC 12434, ATCC 19796, CBS 548.68, ETH 12648, ETH 14318, IFO 13193, IMRU 3677, ISP 5048, JCM 4068, NBRC 13193, NCIMB 11240, NRRL B-1628, RIA 1075, RIA 307, BCRC 12046, CBS 418.59, CGMCC 4.0611, HUT 6081, ICMP 12845, ICMP 156, IMET 41380, JCM 4601, LMG 19312, RIA 507, VKM Ac-1063, VTT E-991419

[Ref.: #84542]

SI-ID 13333

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Actinomycin-Producing Endophytic Streptomyces parvulus Associated with Root of Aloe vera and Optimization of Conditions for Antibiotic Production.	Chandrakar S, Gupta AK	Probiotics Antimicrob Proteins	10.1007/s12602-018-9451-6	2019	*
Phylogeny	Production of polypeptide antibiotic from Streptomyces parvulus and its antibacterial activity.	Shetty PR, Buddana SK, Tatipamula VB, Naga YV, Ahmad J	Braz J Microbiol	10.1590/S1517-83822014005000022	2014	*
Enzymology	Identification of actinomycin D as a specific inhibitor of the alternative pathway of peptidoglycan biosynthesis.	Ogasawara Y, Shimizu Y, Sato Y, Yoneda T, Inokuma Y, Dairi T	J Antibiot (Tokyo)	10.1038/s41429-019-0252-2	2019	*
Metabolism	Optimization of desferrioxamine E production by Streptomyces parvulus.	Gall T, Lehoczki G, Gyemant G, Emri T, Szigeti ZM, Balla G, Balla J, Pocsi I	Acta Microbiol Immunol Hung	10.1556/030.63.2016.029	2016	*
Genetics	Complete Genome Sequence of Streptomyces parvulus 2297, Integrating Site-Specifically with Actinophage R4.	Nishizawa T, Miura T, Harada C, Guo Y, Narisawa K, Ohta H, Takahashi H, Shirai M	Genome Announc	10.1128/genomeA.00875-16	2016	*
Phylogeny	Streptomyces hyderabadensis sp. nov., an actinomycete isolated from soil.	Reddy TVK, Mahmood S, Paris L, Reddy YHK, Wellington EMH, Idris MM	Int J Syst Evol Microbiol	10.1099/ijs.0.020446-0	2010	*
Phylogeny	Integrated DNA sequences in three streptomycetes form related autonomous plasmids after transfer to Streptomyces lividans.	Hopwood DA, Hintermann G, Kieser T, Wright HM	Plasmid	10.1016/0147-619x(84)90002-7	1984	*
	Electroporation of intact cells of Streptomyces parvulus and Streptomyces vinaceus.	Mazy-Servais C, Baczkowski D, Dusart J	FEMS Microbiol Lett	10.1111/j.1574-6968.1997.tb12561.x	1997	*

References

#9126

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40048

#18473

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20216

Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#84542

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID13333.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces parvulus strain JCM 4068

Streptomyces parvulus JCM 4068

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