Strain identifier
BacDive ID: 15453
Type strain:
Species: Actinosporangium violaceum
Strain history: KCC A-0052 <-- RIA 655 <-- INMI 3180.
NCBI tax ID(s): 66375 (species)
General
@ref: 10972
BacDive-ID: 15453
DSM-Number: 43350
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic
description: Actinosporangium violaceum DSM 43350 is a spore-forming, mesophilic bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 66375
- Matching level: species
strain history
@ref | history |
---|---|
10972 | <- S.T. Williams <- KCC <- V.D. Kutznetsov, RIA <- INMI |
67770 | KCC A-0052 <-- RIA 655 <-- INMI 3180. |
doi: 10.13145/bacdive15453.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Actinosporangium
- species: Actinosporangium violaceum
- full scientific name: Actinosporangium violaceum corrig. Krassilnikov and Yuan 1961 (Approved Lists 1980)
synonyms
@ref synonym 20215 Actinosporangium violaceus 20215 Streptomyces paradoxus
@ref: 10972
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces paradoxus
full scientific name: Streptomyces paradoxus Goodfellow et al. 1986
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain |
---|---|---|---|
69480 | no | 94.004 | |
69480 | 100 | positive |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
10972 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
10972 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | yes | https://mediadive.dsmz.de/medium/84 | Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
10972 | positive | growth | 28 | mesophilic |
67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | yes | 100 |
69480 | yes | 100 |
Isolation, sampling and environmental information
isolation
@ref | sample type | country | origin.country | continent |
---|---|---|---|---|
10972 | soil | |||
67770 | Soil | China | CHN | Asia |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_408.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_91;97_97;98_106;99_408&stattab=map
- Last taxonomy: Streptomyces
- 16S sequence: AB184628
- Sequence Identity:
- Total samples: 50
- soil counts: 30
- animal counts: 18
- plant counts: 2
Safety information
risk assessment
- @ref: 10972
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Streptomyces paradoxus gene for 16S ribosomal RNA, partial sequence, strain: JCM 3052 | D43975 | 121 | ena | 66375 |
10972 | Streptomyces paradoxus gene for 16S rRNA, partial sequence, strain: NBRC 14887 | AB184628 | 1477 | ena | 66375 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Streptomyces paradoxus strain DSM 43350 | 66375.3 | wgs | patric | 66375 |
66792 | Streptomyces paradoxus DSM 43350 | 2861534081 | draft | img | 66375 |
67770 | Streptomyces paradoxus DSM 43350 | GCA_014202475 | scaffold | ncbi | 66375 |
GC content
@ref | GC-content |
---|---|
67770 | 70.3 |
67770 | 71.6 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | yes | 100 | no |
gram-positive | yes | 89.821 | no |
anaerobic | no | 99.107 | no |
halophile | no | 94.578 | no |
spore-forming | yes | 95.475 | no |
glucose-util | yes | 89.726 | no |
thermophile | no | 98.313 | yes |
flagellated | no | 97.533 | no |
aerobic | yes | 93.552 | no |
glucose-ferment | no | 90.332 | no |
motile | no | 94.316 | no |
External links
@ref: 10972
culture collection no.: DSM 43350, ATCC 15813, INMI 3180, JCM 3052, KCC 3052, KCC A-0052, RIA 655, BCRC 12521, CGMCC 4.1190, CGMCC 4.2008, IFM 1160, IFO 14887, IMET 43491, KCTC 9118, NBRC 14887, NRRL B-3457, NRRL B-3483, PCM 2310, VKM Ac-645
straininfo link
- @ref: 84541
- straininfo: 36505
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
10972 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43350) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-43350 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
84541 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID36505.1 | StrainInfo: A central database for resolving microbial strain identifiers |