Strain identifier

BacDive ID: 15453

Type strain: Yes

Species: Actinosporangium violaceum

Strain history: KCC A-0052 <-- RIA 655 <-- INMI 3180.

NCBI tax ID(s): 66375 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 10972

BacDive-ID: 15453

DSM-Number: 43350

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic

description: Actinosporangium violaceum DSM 43350 is a spore-forming, mesophilic bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 66375
  • Matching level: species

strain history

@refhistory
10972<- S.T. Williams <- KCC <- V.D. Kutznetsov, RIA <- INMI
67770KCC A-0052 <-- RIA 655 <-- INMI 3180.

doi: 10.13145/bacdive15453.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Actinosporangium
  • species: Actinosporangium violaceum
  • full scientific name: Actinosporangium violaceum corrig. Krassilnikov and Yuan 1961 (Approved Lists 1980)
  • synonyms

    @refsynonym
    20215Actinosporangium violaceus
    20215Streptomyces paradoxus

@ref: 10972

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces paradoxus

full scientific name: Streptomyces paradoxus Goodfellow et al. 1986

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no94.004
69480100positive

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
10972GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
10972ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://mediadive.dsmz.de/medium/84Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
10972positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481yes100
69480yes100

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
10972soil
67770SoilChinaCHNAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_408.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_91;97_97;98_106;99_408&stattab=map
  • Last taxonomy: Streptomyces
  • 16S sequence: AB184628
  • Sequence Identity:
  • Total samples: 50
  • soil counts: 30
  • animal counts: 18
  • plant counts: 2

Safety information

risk assessment

  • @ref: 10972
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces paradoxus gene for 16S ribosomal RNA, partial sequence, strain: JCM 3052D43975121ena66375
10972Streptomyces paradoxus gene for 16S rRNA, partial sequence, strain: NBRC 14887AB1846281477ena66375

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces paradoxus strain DSM 4335066375.3wgspatric66375
66792Streptomyces paradoxus DSM 433502861534081draftimg66375
67770Streptomyces paradoxus DSM 43350GCA_014202475scaffoldncbi66375

GC content

@refGC-content
6777070.3
6777071.6

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
gram-positiveyes89.821no
anaerobicno99.107no
halophileno94.578no
spore-formingyes95.475no
glucose-utilyes89.726no
thermophileno98.313yes
flagellatedno97.533no
aerobicyes93.552no
glucose-fermentno90.332no
motileno94.316no

External links

@ref: 10972

culture collection no.: DSM 43350, ATCC 15813, INMI 3180, JCM 3052, KCC 3052, KCC A-0052, RIA 655, BCRC 12521, CGMCC 4.1190, CGMCC 4.2008, IFM 1160, IFO 14887, IMET 43491, KCTC 9118, NBRC 14887, NRRL B-3457, NRRL B-3483, PCM 2310, VKM Ac-645

straininfo link

  • @ref: 84541
  • straininfo: 36505

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
10972Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43350)https://www.dsmz.de/collection/catalogue/details/culture/DSM-43350
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
84541Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID36505.1StrainInfo: A central database for resolving microbial strain identifiers