Strain identifier
BacDive ID: 15453
Type strain: 
Species: Streptomyces paradoxus
Strain history: KCC A-0052 <-- RIA 655 <-- INMI 3180.
NCBI tax ID(s): 66375 (species)
version 9.3 (current version)
General
@ref: 10972
BacDive-ID: 15453
DSM-Number: 43350
keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic
description: Streptomyces paradoxus DSM 43350 is an aerobe, spore-forming, mesophilic bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 66375
- Matching level: species
strain history
| @ref | history |
|---|---|
| 10972 | <- S.T. Williams <- KCC <- V.D. Kutznetsov, RIA <- INMI |
| 67770 | KCC A-0052 <-- RIA 655 <-- INMI 3180. |
doi: 10.13145/bacdive15453.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces paradoxus
- full scientific name: Streptomyces paradoxus Goodfellow et al. 1986
synonyms
@ref synonym 20215 Actinosporangium violaceum 20215 Actinosporangium violaceus
@ref: 10972
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces paradoxus
full scientific name: Streptomyces paradoxus Goodfellow et al. 1986
type strain: yes
Morphology
cell morphology
- @ref: 125439
- gram stain: positive
- confidence: 98.7
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 10972 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
| 10972 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | yes | https://mediadive.dsmz.de/medium/84 | Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water |
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 10972 | positive | growth | 28 |
| 67770 | positive | growth | 28 |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 125438 | aerobe | 90.57 |
| 125439 | obligate aerobe | 99.1 |
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 125439 | yes | 92.6 |
| 125438 | yes | 93.008 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | country | origin.country | continent |
|---|---|---|---|---|
| 10972 | soil | |||
| 67770 | Soil | China | CHN | Asia |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_408.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_91;97_97;98_106;99_408&stattab=map
- Last taxonomy: Streptomyces
- 16S sequence: AB184628
- Sequence Identity:
- Total samples: 50
- soil counts: 30
- animal counts: 18
- plant counts: 2
Safety information
risk assessment
- @ref: 10972
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Streptomyces paradoxus gene for 16S ribosomal RNA, partial sequence, strain: JCM 3052 | D43975 | 121 | nuccore | 66375 |
| 10972 | Streptomyces paradoxus gene for 16S rRNA, partial sequence, strain: NBRC 14887 | AB184628 | 1477 | nuccore | 66375 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Streptomyces paradoxus strain DSM 43350 | 66375.3 | wgs | patric | 66375 |
| 66792 | Streptomyces paradoxus DSM 43350 | 2861534081 | draft | img | 66375 |
| 67770 | Streptomyces paradoxus DSM 43350 | GCA_014202475 | scaffold | ncbi | 66375 |
GC content
| @ref | GC-content |
|---|---|
| 67770 | 70.3 |
| 67770 | 71.6 |
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 88.058 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 96.87 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 93.008 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 90.57 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 96.5 | no |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 87.5 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | yes | 92.6 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 88.3 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | positive | 98.7 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 99.1 |
External links
@ref: 10972
culture collection no.: DSM 43350, ATCC 15813, INMI 3180, JCM 3052, KCC 3052, KCC A-0052, RIA 655, BCRC 12521, CGMCC 4.1190, CGMCC 4.2008, IFM 1160, IFO 14887, IMET 43491, KCTC 9118, NBRC 14887, NRRL B-3457, NRRL B-3483, PCM 2310, VKM Ac-645
straininfo link
- @ref: 84541
- straininfo: 36505
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 10972 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43350) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-43350 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 84541 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID36505.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | 10.1101/2024.08.12.607695 | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | |||
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | https://github.com/GenomeNet/deepG | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 |