Name: Streptomyces microflavus Krainsky
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 15404

Type strain:

Species: Streptomyces microflavus

Strain Designation: Krainsky

Culture col. no.: DSM 40331, ATCC 13231, ATCC 25474, CBS 124.18, CBS 884.69, ETH 10206, IFO 13062, ISP 5331, JCM 4496, KCC S-0496, NBRC 13062, NRRL B-2156, NRRL B-2888, PSA 122, RIA 1254, VKM Ac-971, BCRC 12084, CGMCC 4.1428, HAMBI 1019, KCTC 19055, LMG 19327, VTT E-011975

Strain history: KCC S-0496 <-- IFO 13062 <-- SAJ <-- ISP 5331 <-- CBS 124.18 <-- A. Krainsky.

NCBI tax ID(s): 1919 (species)

SI-ID 264259

LMG 19327, ATCC 13231, ATCC 25474, CCRC 12084, DSM 40331, IFO 13062, JCM 4496, NRRL B-2156, NRRL B-2888, VKM Ac-971, CBS 124.18, CBS 884.69, AS 4.1428, NBRC 13062, BCRC 12084, HAMBI 1019, KCTC 19055, CGMCC 4.1428, VTT E-011975

Special Collections

Other strains from Streptomyces microflavus

Section

Streptomyces microflavus Krainsky is a spore-forming bacterium that was isolated from soil.

spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces microflavus**
	Full Scientific Name (LPSN)	Streptomyces microflavus (Krainsky 1914) Waksman and Henrici 1948 (Approved Lists 1980)

	Synonym	"Actinomyces* alboviridis"*
	Synonym	"Actinomyces* fulvissimus"*
	Synonym	"Actinomyces* willmorei"*
	Synonym	"Actinomyces* lipmanii"*
	Synonym	"Actinomyces* griseus subsp. alpha"*
	Synonym	Streptomyces fulvissimus
	Synonym	Streptomyces griseus subsp. alpha
	Synonym	Streptomyces griseus subsp. cretosus
	Synonym	"Actinomyces* microflavus"*
	Synonym	Streptomyces lipmanii
	Synonym	Streptomyces alboviridis
	Synonym	Streptomyces willmorei
	Synonym	Streptomyces luridiscabiei

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %91.195

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9463]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9463]

Culture medium growth

[Ref.: #9463]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9463]

Culture medium composition

expand / minimize

[Ref.: #9463]

Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

[Ref.: #9463]

Culture medium growth

[Ref.: #9463]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #9463]	growth	28 °C
[Ref.: #18583]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

aerobe Confidence in %92.678

[Ref.: #69480]	Ability of spore formation	yes Confidence in %91.198
[Ref.: #69481]	Ability of spore formation	yes Confidence in %99

[Ref.: #9463]

Name of produced compound

steroids

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #18583]		NaCl		maximum	2.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #18583]	arabinose ChEBI	-
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #68368]	citrate ChEBI	-	assimilation	* from API 20E
[Ref.: #18583]	fructose ChEBI	+
[Ref.: #68368]	gelatin ChEBI	-	hydrolysis	* from API 20E
[Ref.: #18583]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #18583]	mannitol ChEBI	+
[Ref.: #18583]	myo-inositol ChEBI	+
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #18583]	raffinose ChEBI	+
[Ref.: #18583]	rhamnose ChEBI	+
[Ref.: #18583]	sucrose ChEBI	-
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	-	hydrolysis	* from API 20E
[Ref.: #18583]	xylose ChEBI	+
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	no	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	-		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	-	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	-		* from API 20E
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	-	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #18583]	141	-	+	-	-	-	-	-	-	-	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9463]	Sample type/isolated from	soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB184284 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	286
Soil Samples	2441
Animal Samples	1009
Plant Samples	294
Total Samples	4030

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18583]	Biosafety level	1	German classification
[Ref.: #9463]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #9463]	Streptomyces microflavus strain NRRL B-2156 16S ribosomal RNA gene, partial sequence	DQ445795	1492	GenBank ENA	1919 tax ID
[Ref.: #20218]	Streptomyces microflavus gene for 16S rRNA, partial sequence, strain: NBRC 13062	AB184284	1480	GenBank ENA	1919 tax ID	*
[Ref.: #20218]	Streptomyces microflavus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4496	D44188	120	GenBank ENA	1919 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces microflavus NBRC 13062	GCA_013167915	contig	GenBank ENA	1919 tax ID
[Ref.: #66792]	Streptomyces microflavus JCM 4496	GCA_014650075	scaffold	GenBank ENA	1919 tax ID	*
[Ref.: #66792]	Streptomyces microflavus strain JCM 4496	1919.8	wgs	PATRIC	1919 tax ID	*
[Ref.: #66792]	Streptomyces microflavus strain NBRC 13062	1919.6	wgs	PATRIC	1919 tax ID	*
[Ref.: #66792]	Streptomyces microflavus NBRC 13062	2912640942	draft	JGI IMG/M	1919 tax ID	*

[Ref.: #67770]	GC-content	71.2 mol%	genome sequence analysis
[Ref.: #67770]	GC-content	71 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces microflavus JCM 4496 NCBI: GCA_014650075.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	99	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces microflavus JCM 4496 NCBI: GCA_014650075.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	91.195	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.433	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	92.678	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	91.198	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	94.5	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	87.5	no

Availability in culture collections External links

[Ref.: #9463]

Culture collection no.

DSM 40331, ATCC 13231, ATCC 25474, CBS 124.18, CBS 884.69, ETH 10206, IFO 13062, ISP 5331, JCM 4496, KCC S-0496, NBRC 13062, NRRL B-2156, NRRL B-2888, PSA 122, RIA 1254, VKM Ac-971, BCRC 12084, CGMCC 4.1428, HAMBI 1019, KCTC 19055, LMG 19327, VTT E-011975

[Ref.: #84493]

SI-ID 264259

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Taxonomy, purification and chemical characterization of four bioactive compounds from new Streptomyces sp. TN256 strain.	Smaoui S, Mathieu F, Elleuch L, Coppel Y, Merlina G, Karray-Rebai I, Mellouli L	World J Microbiol Biotechnol	10.1007/s11274-011-0872-6	2011	*

References

#9463

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40331

#18583

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#84493

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID264259.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Streptomyces microflavus in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Streptomyces microflavus JCM 4496

Streptomyces microflavus JCM 4496

Change proposal

Change proposal