Streptomyces microflavus (DSM 40331, ATCC 13231, ATCC 25474)

Name: Streptomyces microflavus (DSM 40331, ATCC 13231, ATCC 25474)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 15404

Type strain

Strain Designation Krainsky

Culture col. no. DSM 40331 ATCC 13231 ATCC 25474 CBS 124.18 CBS 884.69 18 more

NCBI tax ID(s) 1919

Special Collections DSMZ JCM KCTC Wink compendium

History <- E.B. Shirling, ISP <- CBS KCC S-0496 <-- IFO 13062 <-- SAJ <-- ISP 5331 <-- CBS 124.18 <-- A. Krainsky.

Links

Streptomyces microflavus Krainsky is a plant pathogen that was isolated from soil.

plant pathogen genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 264259

LMG 19327,ATCC 13231,ATCC 25474,CCRC 12084,DSM 40331,IFO 13062,JCM 4496,NRRL B-2156,NRRL B-2888,VKM Ac-971,CBS 124.18,CBS 884.69,AS 4.1428,NBRC 13062,BCRC 12084,HAMBI 1019,KCTC 19055,CGMCC 4.1428,VTT E-011975

@ref 20215

Last LPSN update 2026-02-09 11:21:41

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptomyces

Species Streptomyces microflavus

Full scientific name Streptomyces microflavus (Krainsky 1914) Waksman and Henrici 1948 (Approved Lists 1980)

Synonyms (13)

Streptomyces fulvissimus
Streptomyces alboviridis
"Actinomyces fulvissimus"
"Actinomyces griseus subsp. alpha"
"Actinomyces lipmanii"
"Actinomyces alboviridis"
Streptomyces griseus subsp. alpha
Streptomyces willmorei
"Actinomyces willmorei"
Streptomyces luridiscabiei
Streptomyces griseus subsp. cretosus
"Actinomyces microflavus"
Streptomyces lipmanii

BacDive ID	Other strains from **Streptomyces microflavus** (41)	Type strain
15206	S. microflavus A26, DSM 40593, ATCC 27431, CBS 783.72, IFO ... (type strain)
15207	S. microflavus Ihr 582, DSM 40767, ETH 24326, LBG A 3095
15402	S. microflavus DSM 40326, ATCC 25425, CBS 923.69, IFO 13013, ...
15403	S. microflavus DSM 40070, ATCC 19779, ATCC 3331, CBS 532.68, ...
15405	S. microflavus DSM 40459, ATCC 6867, CBS 371.64, CBS 692.72, ...
15406	S. microflavus Wollenweber, DSM 40561, AS 4.1844, ATCC 27903, ...
15407	S. microflavus FH 1371, DSM 40752, ATCC 27357, CGMCC AS ...
15408	S. microflavus JA 4656, DSM 40861, ATCC 3332, ATCC 7717
15409	S. microflavus DSM 40937, AS 4.1843, CBS 219.25, JCM 5078, ...
105488	S. microflavus ST033418(HKI),
127810	S. microflavus ST005115(HKI), China, IMET 40318
127979	S. microflavus ST028277(HKI), FSU-3730, GT20046026,
127980	S. microflavus ST028301(HKI), m59, GT20046035,
127981	S. microflavus SF005184(FSU),
127982	S. microflavus SF006065(FSU),
127983	S. microflavus SF006129(FSU),
127984	S. microflavus SF002711(FSU),
127985	S. microflavus SF004012(FSU),
127986	S. microflavus SF004041(FSU),
127987	S. microflavus SF004078(FSU),
127988	S. microflavus SF004132(FSU),
127989	S. microflavus SF001554(FSU),
127990	S. microflavus SF001575(FSU),
127991	S. microflavus SF004154(FSU),
127992	S. microflavus SF004171(FSU),
127993	S. microflavus SF004174(FSU),
127994	S. microflavus SF004208(FSU),
127995	S. microflavus SF001670(FSU),
127996	S. microflavus SF001834(FSU),
127997	S. microflavus SF001841(FSU),
127998	S. microflavus SF004332(FSU),
127999	S. microflavus SF002411(FSU),
128000	S. microflavus SF006433(FSU),
128001	S. microflavus SF006048(FSU),
128002	S. microflavus SF006364(FSU),
128003	S. microflavus SF006393(FSU),
128004	S. microflavus SF006394(FSU),
128005	S. microflavus SF006391(FSU),
24622	S. microflavus Park S63, DSM 41928, KACC 20252, LMG 21390
159106	S. microflavus 1, DSM 40920
159107	S. microflavus DSM 41001, IMRU 3005

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	99.1
125438	positive	91.195

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
9463	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
9463	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)		Medium recipe at MediaDive	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
9463	positive	growth	28
18583	positive	optimum	28
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	aerobe	92.678
125439	obligate aerobe	97.5

Spore formation

@ref	Spore formation	Confidence
125438		91.198

Compound production

9463

Compoundsteroids

Halophily

@ref	Salt	Growth	Tested relation	Concentration
18583	NaCl	positive	maximum	2.5 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
18583	22599 ChEBI	arabinose	-
68368	29016 ChEBI	arginine	+	hydrolysis	from API 20E
68368	16947 ChEBI	citrate	-	assimilation	from API 20E
18583	28757 ChEBI	fructose	+
68368	5291 ChEBI	gelatin	-	hydrolysis	from API 20E
18583	17234 ChEBI	glucose	+
68368	25094 ChEBI	lysine	-	degradation	from API 20E
18583	29864 ChEBI	mannitol	+
18583	17268 ChEBI	myo-inositol	+
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
18583	16634 ChEBI	raffinose	+
18583	26546 ChEBI	rhamnose	+
18583	17992 ChEBI	sucrose	-
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
68368	16199 ChEBI	urea	-	hydrolysis	from API 20E
18583	18222 ChEBI	xylose	+

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Indole test
68368	15688 ChEBI	acetoin	-		from API 20E
68368	35581 ChEBI	indole		-	from API 20E

Enzymes

@ref	Value	Activity	Ec
68368	arginine dihydrolase	+	3.5.3.6	from API 20E
68368	beta-galactosidase	-	3.2.1.23	from API 20E
68368	gelatinase	-		from API 20E
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
68368	urease	-	3.5.1.5	from API 20E

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
18583	-	+	-	-	-	-	-	-	-	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

9463

Sample typesoil

Taxonmaps

69479

Global distribution of 16S sequence AB184284 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	286
Soil Samples	2441
Animal Samples	1009
Plant Samples	294
Total Samples	4030

Interaction and safety

Risk assessment

@ref	Pathogenicity plant	Biosafety level	Biosafety level comment
9463		1	Risk group (German classification) According to TRBA 466
18583		1	German classification According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1465007v1 assembly for Streptomyces microflavus JCM 4496	scaffold	GCA_014650075	1919.8	8113568126	1919	69.1
67770	ASM1316791v1 assembly for Streptomyces microflavus NBRC 13062	contig	GCA_013167915	1919.6	2912640942	1919	40.03

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Streptomyces microflavus gene for 16S rRNA, partial sequence, strain: NBRC 13062	AB184284	1480	1919
20218	Streptomyces microflavus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4496	D44188	120	1919
9463	Streptomyces microflavus strain NRRL B-2156 16S ribosomal RNA gene, partial sequence	DQ445795	1492	1919
124043	Streptomyces microflavus strain JCM 4496 16S ribosomal RNA gene, partial sequence.	MT760557	1332	1919

GC content

@ref	GC-content (mol%)	Method
67770	71.2	genome sequence analysis
67770	71	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Streptomyces microflavus JCM 4496
NCBI: GCA_014650075

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	86.90	no
125439	motility	BacteriaNetⓘ	no	88.70	no
125439	gram_stain	BacteriaNetⓘ	positive	99.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptomyces microflavus JCM 4496
NCBI: GCA_014650075.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	91.20	no
125438	anaerobic	anaerobicⓘ	no	96.43	no
125438	aerobic	aerobicⓘ	yes	92.68	no
125438	spore-forming	spore-formingⓘ	yes	91.20	no
125438	thermophilic	thermophileⓘ	no	94.50	yes
125438	flagellated	motile2+ⓘ	no	87.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	In silico biotechnological potential of Bacillus sp. strain MHSD_37 bacterial endophyte.	Maumela P, Khwathisi A, Madala NE, Serepa-Dlamini MH.	BMC Genomics	10.1186/s12864-024-10305-2	2024
	Bioremediation of Pb contaminated water using a novel Bacillus sp. strain MHSD_36 isolated from Solanum nigrum.	Maumela P, Magida S, Serepa-Dlamini MH.	PLoS One	10.1371/journal.pone.0302460	2024
Metabolism	Activation and Identification of a Griseusin Cluster in Streptomyces sp. CA-256286 by Employing Transcriptional Regulators and Multi-Omics Methods.	Beck C, Gren T, Ortiz-Lopez FJ, Jorgensen TS, Carretero-Molina D, Martin Serrano J, Tormo JR, Oves-Costales D, Kontou EE, Mohite OS, Mingyar E, Stegmann E, Genilloud O, Weber T.	Molecules	10.3390/molecules26216580	2021
Phylogeny	Taxonomy, purification and chemical characterization of four bioactive compounds from new Streptomyces sp. TN256 strain.	Smaoui S, Mathieu F, Elleuch L, Coppel Y, Merlina G, Karray-Rebai I, Mellouli L	World J Microbiol Biotechnol	10.1007/s11274-011-0872-6	2011

References

#9463	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40331
#18583	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68368	Automatically annotated from API 20E .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Streptomyces microflavus (DSM 40331, ATCC 13231, ATCC 25474)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Compound production

Halophily

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20E

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014650075

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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