Mycobacterium tuberculosis CCUG 38147 is a prokaryote that was isolated from Expectorate,woman,pulmonary tuberculosis.
genome sequence 16S sequence
SI-ID 38547
| @ref 20215 |
Last LPSN update
2025-12-16 10:05:54 |
| Domain Bacillati |
| Phylum Actinomycetota |
| Class Actinomycetes |
| Order Mycobacteriales |
| Family Mycobacteriaceae |
| Genus Mycobacterium |
| Species Mycobacterium tuberculosis |
| Full scientific name Mycobacterium tuberculosis (Zopf 1883) Lehmann and Neumann 1896 (Approved Lists 1980) |
| Synonyms (8) |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | ASM298233v1 assembly for Mycobacterium tuberculosis variant africanum ATCC 25420 | scaffold | GCA_002982335   | 33894.42  | 8117330365  | 33894 | 40.15 |  |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Metabolism | Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry identification of mycobacteria in routine clinical practice. | El Khechine A, Couderc C, Flaudrops C, Raoult D, Drancourt M. | PLoS One | 10.1371/journal.pone.0024720 | 2011 | |
| Phylogeny | TBpore cluster: A novel phylogenetic pipeline for tuberculosis transmission studies using nanopore next-generation sequencing data. | Gagnon S, Ametepe E, Point F, Cloutier Charette W, Chakravarti A, Rivest P, Akochy PM, Soualhine H, Iqbal Z, Hall MB, Lapierre SG. | PLoS One | 10.1371/journal.pone.0325914 | 2025 | |
| Development of CRISPR/Cas12b-Based Multiple Cross Displacement Amplification Technique for the Detection of Mycobacterium tuberculosis Complex in Clinical Settings. | Yang X, Huang J, Chen Y, Ying X, Tan Q, Chen X, Zeng X, Lei S, Wang Y, Li S. | Microbiol Spectr | 10.1128/spectrum.03475-22 | 2023 | | |
| Development and preliminary evaluation toward a new tuberculosis treatment monitoring tool: the PATHFAST TB LAM Ag assay. | Akinaga A, Takahashi M, Yamazaki T, Chikamatsu K, Matsushita S, Hashimoto Y, Iyoda T, Saika T, Mitarai S. | J Clin Microbiol | 10.1128/jcm.00629-24 | 2024 | | |
| Description, validation, and review of a decade of experience with a laboratory-developed PCR test for detection of Mycobacterium tuberculosis complex in pulmonary and extrapulmonary specimens. | Buckwalter SP, Connelly BJ, Louison LK, Kolesch JM, Herring SA, Woodliff ED, Bolster LaSalle CM, Grys TE, Deml SM, Wohlfiel SL, Steinmetz LK, Wengenack NL. | J Clin Tuberc Other Mycobact Dis | 10.1016/j.jctube.2022.100340 | 2022 | | |
| Fundamental Cell Morphologies Examined With Cryo-TEM of the Species in the Novel Five Genera Robustly Correlate With New Classification in Family Mycobacteriaceae. | Yamada H, Chikamatsu K, Aono A, Murata K, Miyazaki N, Kayama Y, Bhatt A, Fujiwara N, Maeda S, Mitarai S. | Front Microbiol | 10.3389/fmicb.2020.562395 | 2020 | | |
| Enzymology | Development of a One-Step Multiplex PCR Assay for Differential Detection of Major Mycobacterium Species. | Chae H, Han SJ, Kim SY, Ki CS, Huh HJ, Yong D, Koh WJ, Shin SJ. | J Clin Microbiol | 10.1128/jcm.00549-17 | 2017 | |
| High Sequence Variability of the ppE18 Gene of Clinical Mycobacterium tuberculosis Complex Strains Potentially Impacts Effectivity of Vaccine Candidate M72/AS01E. | Homolka S, Ubben T, Niemann S. | PLoS One | 10.1371/journal.pone.0152200 | 2016 | | |
| OPC-167832, a Novel Carbostyril Derivative with Potent Antituberculosis Activity as a DprE1 Inhibitor. | Hariguchi N, Chen X, Hayashi Y, Kawano Y, Fujiwara M, Matsuba M, Shimizu H, Ohba Y, Nakamura I, Kitamoto R, Shinohara T, Uematsu Y, Ishikawa S, Itotani M, Haraguchi Y, Takemura I, Matsumoto M. | Antimicrob Agents Chemother | 10.1128/aac.02020-19 | 2020 | | |
| Phylogeny | Novel DNA chip based on a modified DigiTag2 assay for high-throughput species identification and genotyping of Mycobacterium tuberculosis complex isolates. | Srilohasin P, Chaiprasert A, Tokunaga K, Nao N, Prammananan T. | J Clin Microbiol | 10.1128/jcm.00153-14 | 2014 | |
| Phylogeny | New Mycobacterium tuberculosis Complex Sublineage, Brazzaville, Congo. | Malm S, Linguissi LS, Tekwu EM, Vouvoungui JC, Kohl TA, Beckert P, Sidibe A, Rusch-Gerdes S, Madzou-Laboum IK, Kwedi S, Penlap Beng V, Frank M, Ntoumi F, Niemann S. | Emerg Infect Dis | 10.3201/eid2303.160679 | 2017 | |
| Phylogeny | Simple multiplex PCR assay for identification of Beijing family Mycobacterium tuberculosis isolates with a lineage-specific mutation in Rv0679c. | Nakajima C, Tamaru A, Rahim Z, Poudel A, Maharjan B, Khin Saw Aye, Ling H, Hattori T, Iwamoto T, Fukushima Y, Suzuki H, Suzuki Y, Matsuba T. | J Clin Microbiol | 10.1128/jcm.03404-12 | 2013 | |
| Enzymology | Dual color fluorescence in situ hybridization (FISH) assays for detecting Mycobacterium tuberculosis and Mycobacterium avium complexes and related pathogens in cultures. | Shah J, Weltman H, Narciso P, Murphy C, Poruri A, Baliga S, Sharon L, York M, Cunningham G, Miller S, Caviedes L, Gilman R, Desmond E, Ramasamy R. | PLoS One | 10.1371/journal.pone.0174989 | 2017 | |
| Enzymology | A simple and efficient multiplex PCR assay for the identification of Mycobacterium genus and Mycobacterium tuberculosis complex to the species level. | Kim Y, Choi Y, Jeon BY, Jin H, Cho SN, Lee H. | Yonsei Med J | 10.3349/ymj.2013.54.5.1220 | 2013 | |
| Phylogeny | Single-nucleotide polymorphisms in Rv2629 are specific for Mycobacterium tuberculosis genotypes Beijing and Ghana but not associated with rifampin resistance. | Homolka S, Koser C, Archer J, Rusch-Gerdes S, Niemann S. | J Clin Microbiol | 10.1128/jcm.01237-08 | 2009 | |
| Rv2629 Overexpression Delays Mycobacterium smegmatis and Mycobacteria tuberculosis Entry into Log-Phase and Increases Pathogenicity of Mycobacterium smegmatis in Mice. | Liu D, Hao K, Wang W, Peng C, Dai Y, Jin R, Xu W, He L, Wang H, Wang H, Zhang L, Wang Q. | Front Microbiol | 10.3389/fmicb.2017.02231 | 2017 | | |
| Phylogeny | Novel real-time simultaneous amplification and testing method to accurately and rapidly detect Mycobacterium tuberculosis complex. | Cui Z, Wang Y, Fang L, Zheng R, Huang X, Liu X, Zhang G, Rui D, Ju J, Hu Z. | J Clin Microbiol | 10.1128/jcm.05853-11 | 2012 | |
| Pathogenicity | Polymorphisms in isoniazid and prothionamide resistance genes of the Mycobacterium tuberculosis complex. | Projahn M, Koser CU, Homolka S, Summers DK, Archer JA, Niemann S. | Antimicrob Agents Chemother | 10.1128/aac.00555-11 | 2011 | |
| Rapid PCR Detection of Mycoplasma hominis, Ureaplasma urealyticum, and Ureaplasma parvum. | Cunningham SA, Mandrekar JN, Rosenblatt JE, Patel R. | Int J Bacteriol | 10.1155/2013/168742 | 2013 | | |
| Phylogeny | The species Mycobacterium africanum in the light of new molecular markers. | Niemann S, Kubica T, Bange FC, Adjei O, Browne EN, Chinbuah MA, Diel R, Gyapong J, Horstmann RD, Joloba ML, Meyer CG, Mugerwa RD, Okwera A, Osei I, Owusu-Darbo E, Schwander SK, Rusch-Gerdes S. | J Clin Microbiol | 10.1128/jcm.42.9.3958-3962.2004 | 2004 | |
| Pathogenicity | Rapid detection of rpoB gene mutations conferring rifampin resistance in Mycobacterium tuberculosis. | Ao W, Aldous S, Woodruff E, Hicke B, Rea L, Kreiswirth B, Jenison R. | J Clin Microbiol | 10.1128/jcm.00208-12 | 2012 | |
| Phylogeny | Mycobacterium africanum subtype II is associated with two distinct genotypes and is a major cause of human tuberculosis in Kampala, Uganda. | Niemann S, Rusch-Gerdes S, Joloba ML, Whalen CC, Guwatudde D, Ellner JJ, Eisenach K, Fumokong N, Johnson JL, Aisu T, Mugerwa RD, Okwera A, Schwander SK. | J Clin Microbiol | 10.1128/jcm.40.9.3398-3405.2002 | 2002 | |
| High resolution discrimination of clinical Mycobacterium tuberculosis complex strains based on single nucleotide polymorphisms. | Homolka S, Projahn M, Feuerriegel S, Ubben T, Diel R, Nubel U, Niemann S. | PLoS One | 10.1371/journal.pone.0039855 | 2012 | | |
| Phylogeny | Genomic analysis distinguishes Mycobacterium africanum. | Mostowy S, Onipede A, Gagneux S, Niemann S, Kremer K, Desmond EP, Kato-Maeda M, Behr M. | J Clin Microbiol | 10.1128/jcm.42.8.3594-3599.2004 | 2004 | |
| Enzymology | Multicenter evaluation of a transcription-reverse transcription concerted assay for rapid detection of mycobacterium tuberculosis complex in clinical specimens. | Drouillon V, Delogu G, Dettori G, Lagrange PH, Benecchi M, Houriez F, Baroli K, Ardito F, Torelli R, Chezzi C, Fadda G, Herrmann JL. | J Clin Microbiol | 10.1128/jcm.01730-08 | 2009 | |
| Phylogeny | Identification of Mycobacterium species by comparative analysis of the dnaA gene. | Mukai T, Miyamoto Y, Yamazaki T, Makino M. | FEMS Microbiol Lett | 10.1111/j.1574-6968.2005.00031.x | 2006 | |
| Application of infrequent-restriction-site amplification for genotyping of Mycobacterium tuberculosis and non-tuberculous mycobacterium. | Choi TY, Kang JO. | J Korean Med Sci | 10.3346/jkms.2002.17.5.593 | 2002 | | |
| Phylogeny | Novel genetic polymorphisms that further delineate the phylogeny of the Mycobacterium tuberculosis complex. | Huard RC, Fabre M, de Haas P, Lazzarini LC, van Soolingen D, Cousins D, Ho JL. | J Bacteriol | 10.1128/jb.01783-05 | 2006 | |
| Phylogeny | Multiplex real-time PCR assay for rapid identification of Mycobacterium tuberculosis complex members to the species level. | Pinsky BA, Banaei N. | J Clin Microbiol | 10.1128/jcm.00347-08 | 2008 | |
| Pathogenicity | Mycobacterium tuberculosis Rv0679c protein sequences involved in host-cell infection: potential TB vaccine candidate antigen. | Cifuentes DP, Ocampo M, Curtidor H, Vanegas M, Forero M, Patarroyo ME, Patarroyo MA. | BMC Microbiol | 10.1186/1471-2180-10-109 | 2010 | |
| Phylogeny | Evaluation of genotype MTBC assay for differentiation of clinical Mycobacterium tuberculosis complex isolates. | Richter E, Weizenegger M, Rusch-Gerdes S, Niemann S. | J Clin Microbiol | 10.1128/jcm.41.6.2672-2675.2003 | 2003 | |
| Pathogenicity | Molecular basis of intrinsic macrolide resistance in the Mycobacterium tuberculosis complex. | Buriankova K, Doucet-Populaire F, Dorson O, Gondran A, Ghnassia JC, Weiser J, Pernodet JL. | Antimicrob Agents Chemother | 10.1128/aac.48.1.143-150.2004 | 2004 | |
| Phylogeny | Identification of Mycobacterium species by secA1 sequences. | Zelazny AM, Calhoun LB, Li L, Shea YR, Fischer SH. | J Clin Microbiol | 10.1128/jcm.43.3.1051-1058.2005 | 2005 | |
| Phylogeny | Evaluation and strategy for use of MIRU-VNTRplus, a multifunctional database for online analysis of genotyping data and phylogenetic identification of Mycobacterium tuberculosis complex isolates. | Allix-Beguec C, Harmsen D, Weniger T, Supply P, Niemann S. | J Clin Microbiol | 10.1128/jcm.00540-08 | 2008 | |
| Phylogeny | PCR-based method to differentiate the subspecies of the Mycobacterium tuberculosis complex on the basis of genomic deletions. | Huard RC, Lazzarini LC, Butler WR, van Soolingen D, Ho JL. | J Clin Microbiol | 10.1128/jcm.41.4.1637-1650.2003 | 2003 | |
| Phylogeny | Rapid differentiation of "Mycobacterium canettii" from other Mycobacterium tuberculosis complex organisms by PCR-restriction analysis of the hsp65 gene. | Goh KS, Legrand E, Sola C, Rastogi N. | J Clin Microbiol | 10.1128/jcm.39.10.3705-3708.2001 | 2001 | |
| Metabolism | Mycobacterium tuberculosis Rv2536 protein implicated in specific binding to human cell lines. | Garcia J, Puentes A, Rodriguez L, Ocampo M, Curtidor H, Vera R, Lopez R, Valbuena J, Cortes J, Vanegas M, Barrero C, Patarroyo MA, Urquiza M, Patarroyo ME. | Protein Sci | 10.1110/ps.051526305 | 2005 | |
| Metabolism | Characterizing the Mycobacterium tuberculosis Rv2707 protein and determining its sequences which specifically bind to two human cell lines. | Chapeton-Montes JA, Plaza DF, Curtidor H, Forero M, Vanegas M, Patarroyo ME, Patarroyo MA. | Protein Sci | 10.1110/ps.073083308 | 2008 | |
| Phylogeny | Distribution of environmental mycobacteria in Karonga District, northern Malawi. | Chilima BZ, Clark IM, Floyd S, Fine PE, Hirsch PR. | Appl Environ Microbiol | 10.1128/aem.72.4.2343-2350.2006 | 2006 | |
| Pathogenicity | Dual-probe assay for rapid detection of drug-resistant Mycobacterium tuberculosis by real-time PCR. | Wada T, Maeda S, Tamaru A, Imai S, Hase A, Kobayashi K. | J Clin Microbiol | 10.1128/jcm.42.11.5277-5285.2004 | 2004 | |
| Evolution and expansion of the Mycobacterium tuberculosis PE and PPE multigene families and their association with the duplication of the ESAT-6 (esx) gene cluster regions. | Gey van Pittius NC, Sampson SL, Lee H, Kim Y, van Helden PD, Warren RM. | BMC Evol Biol | 10.1186/1471-2148-6-95 | 2006 | | |
| Enzymology | In vitro comparison of NALC-NaOH, tween 80, and C18-carboxypropylbetaine for processing of specimens for recovery of mycobacteria. | Thornton CG, MacLellan KM, Brink TL, Passen S. | J Clin Microbiol | 10.1128/jcm.36.12.3558-3566.1998 | 1998 | |
| Pathogenicity | In vitro activities of the ketolides telithromycin (HMR 3647) and HMR 3004 compared to those of clarithromycin against slowly growing mycobacteria at pHs 6.8 and 7.4. | Rastogi N, Goh KS, Berchel M, Bryskier A. | Antimicrob Agents Chemother | 10.1128/aac.44.10.2848-2852.2000 | 2000 | |
| DNA restriction endonuclease analysis of Mycobacterium bovis and other members of the tuberculosis complex. | Collins DM, De Lisle GW. | J Clin Microbiol | 10.1128/jcm.21.4.562-564.1985 | 1985 | | |
| Enzymology | Characterization of a DNA probe for detection of Mycobacterium tuberculosis complex in clinical samples by polymerase chain reaction. | Altamirano M, Kelly MT, Wong A, Bessuille ET, Black WA, Smith JA. | J Clin Microbiol | 10.1128/jcm.30.8.2173-2176.1992 | 1992 | |
| Pathogenicity | In vitro activity of roxithromycin against the Mycobacterium tuberculosis complex. | Rastogi N, Goh KS, Ruiz P, Casal M. | Antimicrob Agents Chemother | 10.1128/aac.39.5.1162 | 1995 | |
| Characterization of Mycobacterium tuberculosis complex direct repeat sequence for use in cycling probe reaction. | Beggs ML, Cave MD, Marlowe C, Cloney L, Duck P, Eisenach KD. | J Clin Microbiol | 10.1128/jcm.34.12.2985-2989.1996 | 1996 | | |
| Phylogeny | Detection of Mycobacterium tuberculosis directly from spiked human sputum by Q-beta replicase-amplified assay. | Shah JS, Liu J, Buxton D, Stone B, Nietupski R, Olive DM, King W, Klinger JD. | J Clin Microbiol | 10.1128/jcm.33.2.322-328.1995 | 1995 | |
| Phylogeny | Differentiation of mycobacterial species by PCR-restriction analysis of DNA (342 base pairs) of the RNA polymerase gene (rpoB). | Kim BJ, Lee KH, Park BN, Kim SJ, Bai GH, Kim SJ, Kook YH. | J Clin Microbiol | 10.1128/jcm.39.6.2102-2109.2001 | 2001 | |
| Pathogenicity | Intrinsic macrolide resistance in Mycobacterium smegmatis is conferred by a novel erm gene, erm(38). | Nash KA. | Antimicrob Agents Chemother | 10.1128/aac.47.10.3053-3060.2003 | 2003 | |
| Phylogeny | Species identification of mycobacteria by PCR-restriction fragment length polymorphism of the rpoB gene. | Lee H, Park HJ, Cho SN, Bai GH, Kim SJ. | J Clin Microbiol | 10.1128/jcm.38.8.2966-2971.2000 | 2000 | |
| Enzymology | Detection of Mycobacterium tuberculosis in clinical specimens by polymerase chain reaction and Gen-Probe Amplified Mycobacterium Tuberculosis Direct Test. | Abe C, Hirano K, Wada M, Kazumi Y, Takahashi M, Fukasawa Y, Yoshimura T, Miyagi C, Goto S. | J Clin Microbiol | 10.1128/jcm.31.12.3270-3274.1993 | 1993 | |
| Enzymology | PCR identification of Mycobacterium bovis BCG. | Talbot EA, Williams DL, Frothingham R. | J Clin Microbiol | 10.1128/jcm.35.3.566-569.1997 | 1997 | |
| Amplification of a species-specific DNA fragment of Mycobacterium tuberculosis and its possible use in diagnosis. | Del Portillo P, Murillo LA, Patarroyo ME. | J Clin Microbiol | 10.1128/jcm.29.10.2163-2168.1991 | 1991 | | |
| Pathogenicity | In vitro activities of levofloxacin used alone and in combination with first- and second-line antituberculous drugs against Mycobacterium tuberculosis. | Rastogi N, Goh KS, Bryskier A, Devallois A. | Antimicrob Agents Chemother | 10.1128/aac.40.7.1610 | 1996 | |
| Enzymology | Detection of Mycobacterium tuberculosis by PCR amplification with pan-Mycobacterium primers and hybridization to an M. tuberculosis-specific probe. | Tevere VJ, Hewitt PL, Dare A, Hocknell P, Keen A, Spadoro JP, Young KK. | J Clin Microbiol | 10.1128/jcm.34.4.918-923.1996 | 1996 | |
| Phylogeny | Phenotypic and genotypic characterization of Mycobacterium africanum isolates from West Africa. | Frothingham R, Strickland PL, Bretzel G, Ramaswamy S, Musser JM, Williams DL. | J Clin Microbiol | 10.1128/jcm.37.6.1921-1926.1999 | 1999 | |
| Phylogeny | Rapid identification of mycobacteria to species level by PCR-restriction fragment length polymorphism analysis of the hsp65 gene and proposition of an algorithm to differentiate 34 mycobacterial species. | Devallois A, Goh KS, Rastogi N. | J Clin Microbiol | 10.1128/jcm.35.11.2969-2973.1997 | 1997 | |
| Phylogeny | Differentiation of phylogenetically related slowly growing mycobacteria by their gyrB sequences. | Kasai H, Ezaki T, Harayama S. | J Clin Microbiol | 10.1128/jcm.38.1.301-308.2000 | 2000 | |
| Enzymology | Use of PCR and reverse line blot hybridization macroarray based on 16S-23S rRNA gene internal transcribed spacer sequences for rapid identification of 34 mycobacterium species. | Xiong L, Kong F, Yang Y, Cheng J, Gilbert GL. | J Clin Microbiol | 10.1128/jcm.00633-06 | 2006 | |
| Characterization of a Mycobacterium tuberculosis insertion sequence, IS6110, and its application in diagnosis. | Thierry D, Brisson-Noel A, Vincent-Levy-Frebault V, Nguyen S, Guesdon JL, Gicquel B. | J Clin Microbiol | 10.1128/jcm.28.12.2668-2673.1990 | 1990 | | |
| Enzymology | Identification of Mycobacterium tuberculosis and M. avium complex directly from smear-positive sputum specimens and BACTEC 12B cultures by high-performance liquid chromatography with fluorescence detection and computer-driven pattern recognition models. | Jost KC, Dunbar DF, Barth SS, Headley VL, Elliott LB. | J Clin Microbiol | 10.1128/jcm.33.5.1270-1277.1995 | 1995 | |
| Enzymology | Rapid differentiation of bovine and human tubercle bacilli based on a characteristic mutation in the bovine pyrazinamidase gene. | Scorpio A, Collins D, Whipple D, Cave D, Bates J, Zhang Y. | J Clin Microbiol | 10.1128/jcm.35.1.106-110.1997 | 1997 | |
| Phylogeny | Genetic diversity of Mycobacterium africanum clinical isolates based on IS6110-restriction fragment length polymorphism analysis, spoligotyping, and variable number of tandem DNA repeats. | Viana-Niero C, Gutierrez C, Sola C, Filliol I, Boulahbal F, Vincent V, Rastogi N. | J Clin Microbiol | 10.1128/jcm.39.1.57-65.2001 | 2001 | |
| Phylogeny | Duplex PCR for differential identification of Mycobacterium bovis, M. avium, and M. avium subsp. paratuberculosis in formalin- fixed paraffin-embedded tissues from cattle. | Coetsier C, Vannuffel P, Blondeel N, Denef JF, Cocito C, Gala JL. | J Clin Microbiol | 10.1128/jcm.38.8.3048-3054.2000 | 2000 | |
| Pathogenicity | Antimycobacterial spectrum of sparfloxacin and its activities alone and in association with other drugs against Mycobacterium avium complex growing extracellularly and intracellularly in murine and human macrophages. | Rastogi N, Labrousse V, Goh KS, De Sousa JP. | Antimicrob Agents Chemother | 10.1128/aac.35.12.2473 | 1991 | |
| Phylogeny | Impact of 16S rRNA gene sequence analysis for identification of bacteria on clinical microbiology and infectious diseases. | Clarridge JE. | Clin Microbiol Rev | 10.1128/cmr.17.4.840-862.2004 | 2004 | |
| Proteome | Accurate Identification of Closely Related Mycobacterium tuberculosis Complex Species by High Resolution Tandem Mass Spectrometry. | Bajaj AO, Saraswat S, Knuuttila JEA, Freeke J, Stielow JB, Barker AP | Front Cell Infect Microbiol | 10.3389/fcimb.2021.656880 | 2021 | |
How to citeIf you want to cite this particular strain cite the following doi:
https://doi.org/10.13145/bacdive149668.20251217.10
When using BacDive for research please cite the following paper
BacDive in 2025: the core database for prokaryotic strain data
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