Strain identifier

BacDive ID: 149668

Type strain: Yes

Species: Mycobacterium tuberculosis

NCBI tax ID(s): 1773 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 54102

BacDive-ID: 149668

keywords: genome sequence, Bacteria

description: Mycobacterium tuberculosis CCUG 38147 is a bacterium that was isolated from Expectorate,woman,pulmonary tuberculosis.

NCBI tax id

  • NCBI tax id: 1773
  • Matching level: species

doi: 10.13145/bacdive149668.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Mycobacteriaceae
  • genus: Mycobacterium
  • species: Mycobacterium tuberculosis
  • full scientific name: Mycobacterium tuberculosis (Zopf 1883) Lehmann and Neumann 1896 (Approved Lists 1980)
  • synonyms

    @refsynonym
    20215Bacterium tuberculosis
    20215Mycobacterium caprae
    20215Mycobacterium microti
    20215Mycobacterium pinnipedii
    20215Mycobacterium bovis
    20215Mycobacterium africanum
    20215Mycobacterium bovis subsp. caprae
    20215Mycobacterium tuberculosis subsp. caprae

@ref: 54102

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Mycobacteriales

family: Mycobacteriaceae

genus: Mycobacterium

species: Mycobacterium africanum

type strain: yes

Isolation, sampling and environmental information

isolation

  • @ref: 54102
  • sample type: Expectorate,woman,pulmonary tuberculosis
  • geographic location: Sénégal ?,
  • country: Africa
  • continent: Africa

isolation source categories

Cat1Cat2Cat3
#Host Body Product#Oral cavity and Airways#Phlegm
#Infection#Disease
#Infection#Patient
#Host#Human#Female

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Mycobacterium tuberculosis variant africanum ATCC 25420GCA_002982335scaffoldncbi33894
66792Mycobacterium africanum strain ATCC 2542033894.42wgspatric33894

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno99.058no
gram-positiveyes89.624no
anaerobicno98.237no
halophileno84.31no
spore-formingno89.427no
glucose-utilyes65.391no
aerobicyes87.368no
thermophileno92.787no
motileno95.09no
glucose-fermentno88.05no

External links

@ref: 54102

culture collection no.: CCUG 38147, CIP 105147, ATCC 25420

literature

  • topic: Proteome
  • Pubmed-ID: 34239815
  • title: Accurate Identification of Closely Related Mycobacterium tuberculosis Complex Species by High Resolution Tandem Mass Spectrometry.
  • authors: Bajaj AO, Saraswat S, Knuuttila JEA, Freeke J, Stielow JB, Barker AP
  • journal: Front Cell Infect Microbiol
  • DOI: 10.3389/fcimb.2021.656880
  • year: 2021
  • mesh: *Mycobacterium tuberculosis, Species Specificity, Tandem Mass Spectrometry
  • topic2: Phylogeny

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
54102Curators of the CCUGhttps://www.ccug.se/strain?id=38147Culture Collection University of Gothenburg (CCUG) (CCUG 38147)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes