Strain identifier
version 8.1 (current version)
General
@ref: 54102
BacDive-ID: 149668
keywords: genome sequence, Bacteria
description: Mycobacterium tuberculosis CCUG 38147 is a bacterium that was isolated from Expectorate,woman,pulmonary tuberculosis.
NCBI tax id
- NCBI tax id: 1773
- Matching level: species
doi: 10.13145/bacdive149668.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Mycobacteriaceae
- genus: Mycobacterium
- species: Mycobacterium tuberculosis
- full scientific name: Mycobacterium tuberculosis (Zopf 1883) Lehmann and Neumann 1896 (Approved Lists 1980)
synonyms
@ref synonym 20215 Bacterium tuberculosis 20215 Mycobacterium caprae 20215 Mycobacterium microti 20215 Mycobacterium pinnipedii 20215 Mycobacterium bovis 20215 Mycobacterium africanum 20215 Mycobacterium bovis subsp. caprae 20215 Mycobacterium tuberculosis subsp. caprae
@ref: 54102
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Mycobacteriales
family: Mycobacteriaceae
genus: Mycobacterium
species: Mycobacterium africanum
type strain: yes
Isolation, sampling and environmental information
isolation
- @ref: 54102
- sample type: Expectorate,woman,pulmonary tuberculosis
- geographic location: Sénégal ?,
- country: Africa
- continent: Africa
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host Body Product | #Oral cavity and Airways | #Phlegm |
#Infection | #Disease | |
#Infection | #Patient | |
#Host | #Human | #Female |
Sequence information
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Mycobacterium tuberculosis variant africanum ATCC 25420 | GCA_002982335 | scaffold | ncbi | 33894 |
66792 | Mycobacterium africanum strain ATCC 25420 | 33894.42 | wgs | patric | 33894 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
flagellated | no | 99.058 | no |
gram-positive | yes | 89.624 | no |
anaerobic | no | 98.237 | no |
halophile | no | 84.31 | no |
spore-forming | no | 89.427 | no |
glucose-util | yes | 65.391 | no |
aerobic | yes | 87.368 | no |
thermophile | no | 92.787 | no |
motile | no | 95.09 | no |
glucose-ferment | no | 88.05 | no |
External links
@ref: 54102
culture collection no.: CCUG 38147, CIP 105147, ATCC 25420
literature
- topic: Proteome
- Pubmed-ID: 34239815
- title: Accurate Identification of Closely Related Mycobacterium tuberculosis Complex Species by High Resolution Tandem Mass Spectrometry.
- authors: Bajaj AO, Saraswat S, Knuuttila JEA, Freeke J, Stielow JB, Barker AP
- journal: Front Cell Infect Microbiol
- DOI: 10.3389/fcimb.2021.656880
- year: 2021
- mesh: *Mycobacterium tuberculosis, Species Specificity, Tandem Mass Spectrometry
- topic2: Phylogeny
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
54102 | Curators of the CCUG | https://www.ccug.se/strain?id=38147 | Culture Collection University of Gothenburg (CCUG) (CCUG 38147) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |